zdhhc7 (zdhhc7,LOC108435925,LOC107705792,LOC107573093,LOC107736389,LOC107686620,LOC107662857,LOC107601043)


Basic Information

Item Value
gene id zdhhc7
gene name zdhhc7,LOC108435925,LOC107705792,LOC107573093,LOC107736389,LOC107686620,LOC107662857,LOC107601043
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6808935 ~ 6817496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244034.3
ACAGAAGAAGACTGGGTGGGAAGAGGAAGCCTGTATGACCTGTTCTACACGGTTTTGAACAATCTGCTGAAGCCAGGAGTTTTTCTATTCGGCTGTAATGAAATCAGACGGGTTGATCTCGCTGTCGGCCATCGGAGACTGCGGGGGTAAACACCGCACGACTCGCTAATCTCGGTTGAACGCTGTGGATGTAGTGACAGTGCTGCCCAGGTCATTGGGGTGGACGGCATGTCTGTGTGAGGGCCAGTCAGAAAAGTAGACAAGTATGCAGTCTTCTGGACACCGGTTACGGGATGTGGAGCAGCACCATCCCTTACTGGGCAGTGGGGAGGAGGAGGTGGCAGTGGGCCGTGTCTGGTTTATCCAGGATGGCTGTGGCATGGTGTGCGCCTTCATGACCTGGTTTCTGGTGTTGTATGCACAGTTCGTGGTGAATTTTGTCATGTTGCTTCCCTCCAAAAGCTTCTGGTACACTTTAATCAATGGAGTGGCGTTTAACTTCTTGGCTGTGCTGGCGCTGGCATCGCACCTACGCACCATGCTGACAGATCCGGGAGCGGTCCCTAAAGGTAATGCCACTAAAGAGTACATGGAAAGTCTACAATTGAAACCTGGGGAGGTCATCTATAAGTGCCCTAAATGTTGTAGCATCAAGCCAGAGAGAGCCCATCACTGCAGTATCTGCAAGAGATGTATCAGGAAAATGGATCATCATTGTCCCTGGGTGAACAACTGTGTGGGAGAAAACAATCAGCGGTTCTTTGTCCTGTTCACTATGTATATAGCTTCAATTTCCCTGCATGCCCTCTGCCTCAGCTTTTTCCATTTCTTCACCTGTGTCAAAGTCCAGTGGAGCGAGTGCAGTGATTTCTCCCCTCCTGTGGCCGTCATGCTCCTCATTTTCCTCTGCTTGGAGGCTATCCTCTTCCTCACCTTCACCGCCGTCATGTTCGGCACACAAATTCACTCCATTTGCAATGATGAGACGGAAATCGAGAGGCTGAAGAATGAGAAGCCGACGTGGGAGCGGCGGGTGCGCTGGGAGGGGATGAAGGCAGTGTTTGGGGGTCCTCCCTCTCTTCTGTGGTTCAATCCTTTTGCTGGACTGCGCCTCAGGCGCCTGCGGATGGTCCACAGTCGCAAAGGAGGCTCAGAGTTCTCAGTCTGAGGCATCCCAGcatcctggtgtgtgtgctaacaTGCCAGTAAACCCCACACATTGAGAACATGGCACATCTCTCCTAGCTGGTGGTGCAGGTAGGAGAACACAGTGAAGAGAATGCAATAGACTTAAAGCTGCTGgcccggaggaggaggagaggggcTGGGCCAGGACCGTATAGACTCTCTATTAAACCACTGGACCTCAACAGAAGGATCATAATTTTTACTTTTGCTTACGTTGGCTGTGCCTGACCTGTCTTCATGAACATCCGAACAGATTTTccgtttgtttgtgtttttaagggactatttttttgtgtagatATAATACAAGATATTGACTCAATGCTTTAAAAAGGTACCAAGAACATCAGCATTTATAAGGGTATTGCTTCAGAGCATTAGTGTCAAAGTAGTCAAGTTCTTTACAGTCAGTGAATCttggtccaaaaaaaaaaatcctacggACCAAATTGAAATTTGGAGAAGAATGTCTTATTTGCCAAGAAAGTTCTAAACCATATTCTGCATTAAGTGCTTGCTATGAAGCTGTAATAAAACGCTCCCCTGTCTTAGGTATAGATTATACATAAAATCATGAGATAAACATTAAATCAGAAATTATGACAGATGACAGATTATTTTAGCTTATTATGTTGTAGAGACAATAATACATCTAAAGCCTTATTTACACAATCTTGAAGATTATAGAAATGGCAGTAAATGCTGTAGAGAGTATTTAGATCACTGCACTGTTTCAGTGCTGCAGTCATGATCAGTTTTTAAGCTGTTTGAATGGCAAGAATCAAGACAAATCACTTTAGGGTGTGCAGAATGAAAGCATGACCTGCACCCTTTTGCACATTTGAGTTCAGCCATTACATCTGAGGGCTCAGTCAGACCCAGCTGTTGTTTCATATTTCCAGATGTTTGGTTCAAGCTCCTTGTCCTTTTTTGATGCAGAGGCAGCACTGTGTGGTACGGTGCTGCGGCTGCACCTCACTCTCTAATCTTCACTGTATTTCTCACTTCTCTGTAAGACGGGAGCTTTTACCTCAGCGGTTAATAGTGATTTTTATGACGATATATGTATAATTATTGCagatgaaaacatgttttacgAACTAAATA
>XM_015604486.2
cagtGTTATTACTGAACTGGAACTGGGCTATAATGAAacagaaatattaaaattatggaTTAAATGTGTTAACTATATTAAATTCGTGGCAGAATATTGGCTGAAGGACGATGTTGAACGCTGTGGATGTAGTGACAGTGCTGCCCAGGTCATTGGGGTGGACGGCATGTCTGTGTGAGGGCCAGTCAGAAAAGTAGACAAGTATGCAGTCTTCTGGACACCGGTTACGGGATGTGGAGCAGCACCATCCCTTACTGGGCAGTGGGGAGGAGGAGGTGGCAGTGGGCCGTGTCTGGTTTATCCAGGATGGCTGTGGCATGGTGTGCGCCTTCATGACCTGGTTTCTGGTGTTGTATGCACAGTTCGTGGTGAATTTTGTCATGTTGCTTCCCTCCAAAAGCTTCTGGTACACTTTAATCAATGGAGTGGCGTTTAACTTCTTGGCTGTGCTGGCGCTGGCATCGCACCTACGCACCATGCTGACAGATCCGGGAGCGGTCCCTAAAGGTAATGCCACTAAAGAGTACATGGAAAGTCTACAATTGAAACCTGGGGAGGTCATCTATAAGTGCCCTAAATGTTGTAGCATCAAGCCAGAGAGAGCCCATCACTGCAGTATCTGCAAGAGATGTATCAGGAAAATGGATCATCATTGTCCCTGGGTGAACAACTGTGTGGGAGAAAACAATCAGCGGTTCTTTGTCCTGTTCACTATGTATATAGCTTCAATTTCCCTGCATGCCCTCTGCCTCAGCTTTTTCCATTTCTTCACCTGTGTCAAAGTCCAGTGGAGCGAGTGCAGTGATTTCTCCCCTCCTGTGGCCGTCATGCTCCTCATTTTCCTCTGCTTGGAGGCTATCCTCTTCCTCACCTTCACCGCCGTCATGTTCGGCACACAAATTCACTCCATTTGCAATGATGAGACGGAAATCGAGAGGCTGAAGAATGAGAAGCCGACGTGGGAGCGGCGGGTGCGCTGGGAGGGGATGAAGGCAGTGTTTGGGGGTCCTCCCTCTCTTCTGTGGTTCAATCCTTTTGCTGGACTGCGCCTCAGGCGCCTGCGGATGGTCCACAGTCGCAAAGGAGGCTCAGAGTTCTCAGTCTGAGGCATCCCAGcatcctggtgtgtgtgctaacaTGCCAGTAAACCCCACACATTGAGAACATGGCACATCTCTCCTAGCTGGTGGTGCAGGTAGGAGAACACAGTGAAGAGAATGCAATAGACTTAAAGCTGCTGgcccggaggaggaggagaggggcTGGGCCAGGACCGTATAGACTCTCTATTAAACCACTGGACCTCAACAGAAGGATCATAATTTTTACTTTTGCTTACGTTGGCTGTGCCTGACCTGTCTTCATGAACATCCGAACAGATTTTccgtttgtttgtgtttttaagggactatttttttgtgtagatATAATACAAGATATTGACTCAATGCTTTAAAAAGGTACCAAGAACATCAGCATTTATAAGGGTATTGCTTCAGAGCATTAGTGTCAAAGTAGTCAAGTTCTTTACAGTCAGTGAATCttggtccaaaaaaaaaaatcctacggACCAAATTGAAATTTGGAGAAGAATGTCTTATTTGCCAAGAAAGTTCTAAACCATATTCTGCATTAAGTGCTTGCTATGAAGCTGTAATAAAACGCTCCCCTGTCTTAGGTATAGATTATACATAAAATCATGAGATAAACATTAAATCAGAAATTATGACAGATGACAGATTATTTTAGCTTATTATGTTGTAGAGACAATAATACATCTAAAGCCTTATTTACACAATCTTGAAGATTATAGAAATGGCAGTAAATGCTGTAGAGAGTATTTAGATCACTGCACTGTTTCAGTGCTGCAGTCATGATCAGTTTTTAAGCTGTTTGAATGGCAAGAATCAAGACAAATCACTTTAGGGTGTGCAGAATGAAAGCATGACCTGCACCCTTTTGCACATTTGAGTTCAGCCATTACATCTGAGGGCTCAGTCAGACCCAGCTGTTGTTTCATATTTCCAGATGTTTGGTTCAAGCTCCTTGTCCTTTTTTGATGCAGAGGCAGCACTGTGTGGTACGGTGCTGCGGCTGCACCTCACTCTCTAATCTTCACTGTATTTCTCACTTCTCTGTAAGACGGGAGCTTTTACCTCAGCGGTTAATAGTGATTTTTATGACGATATATGTATAATTATTGCagatgaaaacatgttttacgAACTAAATA

Function

symbol description
zdhhc7 Enables S-acyltransferase activity. Involved in peptidyl-L-cysteine S-palmitoylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC7 (zinc finger DHHC-type palmitoyltransferase 7).

NR:

description
PREDICTED: palmitoyltransferase ZDHHC7 isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20029 ZDHHC3_7_25; palmitoyltransferase ZDHHC3/7/25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244034.3 True 2295 mRNA 0.46 8 6808935 6817496
XM_015604486.2 False 2233 mRNA 0.45 8 6809167 6817496

Neighbor

gene id symbol gene type direction distance location
LOC103042367 LOC108435537,LOC105906449,LOC101169526 coding upstream 49467 6731170 ~ 6759468 (+)
gas8 gas8,LOC108276428 coding upstream 320648 6482819 ~ 6488287 (+)
dbndd1 dbndd1,dbnd1,LOC106562278 coding upstream 445786 6324821 ~ 6363149 (+)
foxf1 foxf1 coding upstream 503363 6301848 ~ 6305572 (+)
irf8 irf8 coding upstream 697929 6100753 ~ 6111006 (+)
cog8 cog8,LOC107686577,LOC107573089 coding downstream 6133 6823629 ~ 6828644 (+)
wdr59 wdr59,LOC107686576 coding downstream 21382 6838878 ~ 6858524 (+)
LOC103038759 glg1,LOC107686575,LOC107705797,LOC107573092 coding downstream 54365 6871861 ~ 6930402 (+)
LOC103044721 zfhx3 coding downstream 129957 6947453 ~ 6984137 (+)
LOC103045026 LOC108424689 coding downstream 200018 7017514 ~ 7025945 (+)
G156523 pdpr,LOC106595780 non-coding upstream 34203 6768942 ~ 6774732 (+)
G156499 NA non-coding upstream 137741 6670921 ~ 6671194 (+)
G156451 NA non-coding upstream 307761 6499851 ~ 6501174 (+)
G156438 NA non-coding upstream 367658 6441051 ~ 6441277 (+)
G156436 NA non-coding upstream 376073 6432397 ~ 6432862 (+)
G156562 NA non-coding downstream 50764 6868260 ~ 6869564 (+)
G156623 gcsh,LOC105912338,LOC107662900,LOC100702337,LOC107564915,LOC102203905,LOC102786853 non-coding downstream 209102 7026598 ~ 7030708 (+)
G156697 ddx11,LOC107686596 non-coding downstream 428268 7245764 ~ 7248460 (+)
G156731 LOC108437702,LOC108264175 non-coding downstream 534501 7351997 ~ 7412688 (+)
G156824 utp15,LOC107559694,LOC107686557,LOC107662854 non-coding downstream 736157 7553653 ~ 7558957 (+)
G156188 NA other upstream 1651535 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 2171645 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 2876772 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 3194444 3611018 ~ 3614491 (+)
G155776 NA other upstream 4053823 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 276011 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 554880 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 783071 7600567 ~ 7606668 (+)
G157055 NA other downstream 1752434 8569930 ~ 8570877 (+)
G157383 NA other downstream 3123333 9940829 ~ 9941805 (+)

Expression


Co-expression Network