cog8 (cog8,LOC107686577,LOC107573089)


Basic Information

Item Value
gene id cog8
gene name cog8,LOC107686577,LOC107573089
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6823629 ~ 6828644 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244039.3
CCCCCTTCTCCTGCCGGAGAGTAAAGATGGCGGCAGTAGACGTGGAGGATGAGAGTATCCTGGTGTCCGTGTTTAAGGACAGTTTCCCGGAGAACTGGCGGGAGAACCCGGACTTCGCCGCGTACCTGGCGGAGCTGTGCTCGCTGGGGGTGGAGCGGTTGGGCCGGGAGCCGGAGCGGCTGAGTGAGGAGCGCGCGCAGATCCTACAGCAGACCCGCGAGCTCGCCTTCTCCAACTACAAGACCTTCATCCGCACCGCGCACTGCACCAAACACATCTACACAGACTTCGGCCGCGTGGAGAGCAGCCTGTCCAAACTGCTGGATAAACTGCCCAGCTTCGGAGAAAAATGCAGGGGCTTTGtaaaagaagcagaagagaTCGGCCTGAGCCGACGCATGAACAGTCTGACCCTGAATCGCCACACAGAAATCCTGGAGATTCTGGAGATCCCCCAGCTCATGGACACCTGTGTGCGTAATGGGTATTACGAGGAGGCGCTGGAGCTGGCCACCTATGTGAAGAGGCTGGAGAAGAAACACTCGTCTCTTCCTGTCATTCAGGGAATAGTACGTGAGGTTCGACAGTCAGCTCAGCTCATGCTGAACCAGCTCCTTCAACAGCTTCGCAGCAACTCCCAGCTGCCGGTTTGCCTCCGGGTGATTGGCTACCTGCGCAGAATGGACGTGTTCACGGAAGCAGAACTACGTGTGAAGTTCCTGCAAGCTCGTGGCAGCTGGCTGCGTTCTGTCTTAGCTGCCGTCCCTGACGAGGACCCTTACTTCCACATCACCAAAACCATCGAGGCCTGCAGAGTTCATCTGTTCGATATCATCACCCAGTACCGCGCCATTTTCTCAGATGAGGATCCCCTGCTGCCTCCGGGGGGACAGGTTGTCAATGAAAGTGCCATCTTTCACGGCTGGGTGGTGCAGCAGATCTCACAGTTCCTGGAAACCCTGGATAGAGATCTGAAGCGTGGAGTGGGAAGCCGCTTGGACTCCCTGCTTGGCCAGTGCATGTACTTTGGTCTGTCCTTCAGTCGTGTCGGGGCAGACTTCCGTGGGCAGCTTGCACCGATGTTTCAGCAAGTAGCCATGGACACGTTCCAGAAAGCTGTGAAAGAAGCTGTTGATAAGTTTCAAGAAGACATGAATCTGTACACTCTTATTTCTCTCCCGTCAATGCTTGGCAATACTATCCCCCCTGTGGCTCCAAGTACTCAGCCTGGCACTCTCCAGCCTCCTATGGCCTTGTTGGACTTCCCTCCGTTAGCCTGCTTTCTGAATAATGTCCTAACAGCCTTCAATGATCTGCGTCTCTGTTGCCCCATTGGTTTAGCCCAAGAAGTTACCAAATGTCTTGAGGATGCTCTTCTGAAGGTGACCAAATTAATCCTGGTGTTCCATCGAGCAGAGGAGTCGGCCTTCAGTACTCGTGAGCGGGAGTTATTCGTTCAGTTCTGCTGTGCCTTTGCTGAGGACCTGGTGCCATTCCTGAACCGATGTTTACAGGTTCTCTTCCCTCCAGCTCAGCTTGCACAGATTCTTGgTGTCCCACCAGCTCAAGTTCATAAATACGGTAATATCGGCTGTATCAGTGTGAGCGCAATACTGAAGCCTTTAGAGTTCATTCTCCCCAAGAGAGAGCCCATCTTCCCTGCCATGGATCTCTCTGTTGGCATGACTGGTTTAACCACAACAGATACTGAACCTCTACTACCAATCAAACCTTCATCATCCTTAGAGAAAGTTGAGGACGCTCAGCAGCCTTCTTCCCATGTCCAGCAGATACCGGAGACAGAACCTACTGTTGAATCGCCTTCAAATCACGCAGAACCTGCAACTGGAGATGCTGAGAAAAGCATTCCAGAAGAATTGTCCCCAGCAGTCACACAATCTGAAGATATGCTACTATCTGAGTGAAATGAAGATTTACGATTATCGCATCTGTTAAAACTTAAACCTTTAATACCTGAACACTATGTTAATATACTTGCACTTTTCTGGCTACTTCCTGTCTTTGGGAAATGCTGGATTGAGTTACTATGCTTCTCCTGggaaattaatgtatttaatatataaattgttTGAAATGACTGGCTGTACATAAAAGTTTTCCTTGGGTCTTTCGAAACTGAATGATGAGATTAAATTTGTATGGGTTTAAA

Function

symbol description
cog8 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIh. Orthologous to human COG8 (component of oligomeric golgi complex 8).

NR:

description
PREDICTED: conserved oligomeric Golgi complex subunit 8

GO:

id name namespace
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
K20295 COG8; conserved oligomeric Golgi complex subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244039.3 True 2170 mRNA 0.51 5 6823629 6828644

Neighbor

gene id symbol gene type direction distance location
zdhhc7 zdhhc7,LOC108435925,LOC107705792,LOC107573093,LOC107736389,LOC107686620,LOC107662857,LOC107601043 coding upstream 6133 6808935 ~ 6817496 (+)
LOC103042367 LOC108435537,LOC105906449,LOC101169526 coding upstream 64161 6731170 ~ 6759468 (+)
gas8 gas8,LOC108276428 coding upstream 335342 6482819 ~ 6488287 (+)
dbndd1 dbndd1,dbnd1,LOC106562278 coding upstream 460480 6324821 ~ 6363149 (+)
foxf1 foxf1 coding upstream 518057 6301848 ~ 6305572 (+)
wdr59 wdr59,LOC107686576 coding downstream 10234 6838878 ~ 6858524 (+)
LOC103038759 glg1,LOC107686575,LOC107705797,LOC107573092 coding downstream 43217 6871861 ~ 6930402 (+)
LOC103044721 zfhx3 coding downstream 118809 6947453 ~ 6984137 (+)
LOC103045026 LOC108424689 coding downstream 188870 7017514 ~ 7025945 (+)
LOC103039382 otogl,LOC107736094,LOC107686601,LOC107662850,LOC107600679 coding downstream 203259 7031903 ~ 7087583 (+)
G156523 pdpr,LOC106595780 non-coding upstream 48897 6768942 ~ 6774732 (+)
G156499 NA non-coding upstream 152435 6670921 ~ 6671194 (+)
G156451 NA non-coding upstream 322455 6499851 ~ 6501174 (+)
G156438 NA non-coding upstream 382352 6441051 ~ 6441277 (+)
G156436 NA non-coding upstream 390767 6432397 ~ 6432862 (+)
G156562 NA non-coding downstream 39616 6868260 ~ 6869564 (+)
G156623 gcsh,LOC105912338,LOC107662900,LOC100702337,LOC107564915,LOC102203905,LOC102786853 non-coding downstream 197954 7026598 ~ 7030708 (+)
G156697 ddx11,LOC107686596 non-coding downstream 417120 7245764 ~ 7248460 (+)
G156731 LOC108437702,LOC108264175 non-coding downstream 523353 7351997 ~ 7412688 (+)
G156824 utp15,LOC107559694,LOC107686557,LOC107662854 non-coding downstream 725009 7553653 ~ 7558957 (+)
G156188 NA other upstream 1666229 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 2186339 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 2891466 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 3209138 3611018 ~ 3614491 (+)
G155776 NA other upstream 4068517 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 264863 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 543732 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 771923 7600567 ~ 7606668 (+)
G157055 NA other downstream 1741286 8569930 ~ 8570877 (+)
G157383 NA other downstream 3112185 9940829 ~ 9941805 (+)

Expression


Co-expression Network