LOC103045026 (LOC108424689)


Basic Information

Item Value
gene id LOC103045026
gene name LOC108424689
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7017514 ~ 7025945 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244041.3
agcttGTGTAAGCTCCTGATTCAGCTGGTCTGTCAGGTTCTCATGTGTTATAACTCAGCTCACACTGtgttgttctgtgtgtgttcttaATGTTTTGGGCTGTTATAAGTCAGAGATGTCAGTGTCCGCAATGTCTGAGGTCCGGTTAAAGCTCAGGGATCTGCTGCTGGGTCTGGAAGACGCTGAGGGCTTTTTctgcctgtgtctgtctgcactgGGTGAGAGAGACACTCTAGCTCTGTTTCTGGACCTGATTAAACCTCTTGCTTCAGGGCATGTTCAGCTGTACAGCCAGCTCTCTGCCATCCACACCAACTACTTCTCACGGGATGAGGAAGAAGCACTGGAGGTAGCCATAGCTCTTTCTCTTCATGACACCAACCAAAGAAGCTTTGACCAACTGGCTGAAAGAGGATCAGAGAACAGGGAGCCAGGAGATccagagaaactcattcagaaaggATGCACACTGAAACACATCAGGCCTCAGAGAGACTCCACTGATACTTATACTTCAGGCCCATCCTTGGTTGTAGATGATGTGCCTTTAAAGAATGAAGACAGGGGTCACTTAACAAAGCCAAAGAAATCACGGAGGCACCGGAAAAAGCAGCAAATGCTGAAGAATCCATCGGCCCCGCGGCCTGTGCTGCTGTGGCTCCGACGGGACCTCCGCATGTGGGACAATCCAGCCCTGATTGGCTGCCTTGAGTTAGGTGCACCCATCATTCCTGTATTCCTATGGAATGCTACAGAGGAGGAAGGGTCAGGGCTCACTAAAGCAGCAGGTGGAGCGAGTAAGTACTGGATGCATCAGGCGCTGGTCTGTCTGAACCGTTCTCTTGAGGAACGCGGTAGTCACCTGGTCACTCAGAGAGCCGAGCCGTCCTCCTTAACTGCCCTGCAGGCACTGGTGGCAGAGACCGGGGCAGGAACTGTGGTGGCCACTGCACTGTATGAGCCATGGCTTCAGGAACGAGATGAAGCTGTGTGGGCTACACTGGAGAAACAGGGTGTGAAATGTCACATATACCACTCCTACTGCCTCAGAGACCCCAACACTGTCAGCACAAGGGGTGTTGGCCTGAGAGGTATCGGCTCTGTATCTCACTTTATAAGCTGCTGCAATCAAAACCCTGGCCCTGGAATAGGAGCACCACTGGATGCCCCCGGTGCTCTGCCTTCTCCATCATCCTGGCCTCAGGGATGCCCTCTCACCCAGCTGGAACTGGCTCTAATGCCCGTCAGGAAAGATGGCACTGTGATTGACTGGGCAGCAAATATTCGACAAGCATGGGATTTCAGTGAGGAAGGAGCTCAGGCTCGATTAGAGACTTTCCTAAAAGATGGTGTGTACCGCTATGAGAAAGAGTCATGTCGAGCGGATGTTCCAAACACCAGCTGTCTGTCTCCTTACCTACACTTTGGGCAGCTGAGCGTTCGCTCTCTGTTGTGGGATGCTCGAGATGCTCGTTGCCGGCCTCAAAAGTTCCAGCGTAAGTTTGCATGGAGAGATCTGGCATACTGGCAGCTCTGCCTGTTCCCAGACCTGCCCTGGGAATCCCTCAGGCCTCCATACAAGGCTCTTCCCTGGAATTCAGATCGTGCCCACCTCAAGGCTTGGCAGCGTGGGCGTACCGGGTACCCGCTGGTTGATGCAGCCATGCGGCAGCTGTGGCTCACAGGCTGGATGAACAACTACATGAGGCATGTGGCTGCATCCTTCCTTATTGCCTACCTCCACATCGCCTGGCAGGAGGGATACCGCTGGTTTCAGGATACTCTAGTGGACGCTGATGTTGCTATAGATGCTATGATGTGGCAGAATGGAGGCATGTGTGGTCTGGACCACTGGAACTTCGTCATGCACCCGGTGGATGCGGCGTTAACCTGCGACCCCAATGGAAACTATGTTAGGCAGTGGTGTCCTGAGCTTAAGGGACTGCCAGACGACTTCATCCATAAGCCCTGGATGTGCCCAGGCTCTGTACTGCGTAGGGCAGGTGTGATTTTAGGCCAGAACTACCCAGAGCGTGTTGTGGTTGAGCTGGAGGAGCGGCGTGCCCAGTCTCTGCAGGATGTGAGGATGGTAAGGAAGCGTTTCAGTGAGTACGTGTGCCAGCAGACGGGCTGCGACCTACTGCCCCTACCCACCAAGCTTGTCCAGGAGGCCCTGGGGAGCACGGATGACCTAGTGCAGCGTGGAGGGAATGAGTTCCTGCTCCCAGTCATCACACGAATGGAGTTCAGACTGGAGCTTGAAGATACAGCCAGCCACAGCGCAGTTCTGAAAGGCTACGTCAGCCGCAAGAGAGACGAGAAAATTGCCTTCCTAAACAAGTGTGACTTTACAGCCAGCGTGATGTACGAGAACGctcagaggagagagaggatggagaagaACCACTGCATGCTTGAAGATCTCCAGTGCCCCCCCACCAATAGGGGGAGAGGGCGGCATCGCAACAGCAGGCCTGTGAGTGGTGCTGCACAGCAAAGATAAGCCAGTACTTTAGAGAAGTCAGTGGCATTTCCACAGTCACTTTTAGAGCTTGTAAACAAAGGTGACTTTCtggagtgtgcgtgtgtgttttattgagcAGATACACTTGATTTTCCTTCAAACTGCTGCCAAGGGCAGTGAATGGTGCTGTAGAGCAAAGATTAAAGTTCCTAGAGAAAGGGCTATGGCATCACCACAGTCACTGTATTTTGTAATACGAACCTATTAAACAAGTTTTTCCACTTGC

Function

NR:

description
PREDICTED: cryptochrome-1-like

GO: NA

KEGG:

id description
K12119 CRY2; cryptochrome 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244041.3 True 2750 mRNA 0.53 8 7017514 7025945

Neighbor

gene id symbol gene type direction distance location
LOC103044721 zfhx3 coding upstream 33377 6947453 ~ 6984137 (+)
LOC103038759 glg1,LOC107686575,LOC107705797,LOC107573092 coding upstream 87112 6871861 ~ 6930402 (+)
wdr59 wdr59,LOC107686576 coding upstream 158990 6838878 ~ 6858524 (+)
cog8 cog8,LOC107686577,LOC107573089 coding upstream 188870 6823629 ~ 6828644 (+)
zdhhc7 zdhhc7,LOC108435925,LOC107705792,LOC107573093,LOC107736389,LOC107686620,LOC107662857,LOC107601043 coding upstream 200018 6808935 ~ 6817496 (+)
LOC103039382 otogl,LOC107736094,LOC107686601,LOC107662850,LOC107600679 coding downstream 5958 7031903 ~ 7087583 (+)
washc1 wash1,LOC103045331,LOC107686618,LOC107564895 coding downstream 204982 7230927 ~ 7241982 (+)
fkbp4 fkbp4,LOC107735478,LOC107662895,LOC107686573,LOC107705800,LOC107564896 coding downstream 237918 7263863 ~ 7271911 (+)
LOC103040627 NA coding downstream 249008 7274953 ~ 7315555 (+)
c2cd5 c2cd5 coding downstream 298555 7324500 ~ 7358192 (+)
G156562 NA non-coding upstream 147950 6868260 ~ 6869564 (+)
G156523 pdpr,LOC106595780 non-coding upstream 242782 6768942 ~ 6774732 (+)
G156499 NA non-coding upstream 346320 6670921 ~ 6671194 (+)
G156451 NA non-coding upstream 516340 6499851 ~ 6501174 (+)
G156438 NA non-coding upstream 576237 6441051 ~ 6441277 (+)
G156623 gcsh,LOC105912338,LOC107662900,LOC100702337,LOC107564915,LOC102203905,LOC102786853 non-coding downstream 653 7026598 ~ 7030708 (+)
G156697 ddx11,LOC107686596 non-coding downstream 219819 7245764 ~ 7248460 (+)
G156731 LOC108437702,LOC108264175 non-coding downstream 326052 7351997 ~ 7412688 (+)
G156824 utp15,LOC107559694,LOC107686557,LOC107662854 non-coding downstream 527708 7553653 ~ 7558957 (+)
G156856 pdp2,LOC108423909 non-coding downstream 726258 7752203 ~ 7755664 (+)
G156188 NA other upstream 1860114 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 2380224 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 3085351 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 3403023 3611018 ~ 3614491 (+)
G155776 NA other upstream 4262402 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 67562 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 346431 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 574622 7600567 ~ 7606668 (+)
G157055 NA other downstream 1543985 8569930 ~ 8570877 (+)
G157383 NA other downstream 2914884 9940829 ~ 9941805 (+)

Expression


Co-expression Network