LOC103028022 (LOC103028022)


Basic Information

Item Value
gene id LOC103028022
gene name LOC103028022
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7572151 ~ 7581205 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244072.3
aacacacacacgtatacaggCACGCACGCGCGCAACGATGAGCAGGaTGAGCTCAGCACTGAGTGCgatctgtattgtttttttgggCATCATGAGGGTGTCAGCTGTAGACACATTCCCTAAGAAATTTGTGGCAGTTCAGATGAACAGTGATGTTACCCTGCACTGTGACACTACTGACCAGGATGTTACATGGCAGTATGACTCGGATGAATTGGAGGCATCAGAGGATATAAGGCTTGAAGGCAACAAGCTGATTCTTAAACGAATCGAAGAGGAACAGGCTGGGAACTACACCTGCTggagaaataatgaaatagtaGATTATACTTACGTCCTGCTTGATATGACTTCCCACATTACTGACTTAACTATAAACTGCACAGCTGAAACATTCAACTGCACCTTCAACATCTCCTGCAATATGAACCAACCTGCCTTCAATTATTTCAGACTTCGCAATAAGCgGGATAATAGCAACTGGGTGATGCCTTCTGAAGATGGCGCATTTCATCTCACCCACTCCACCAACCCGTATGCAGAGGAAGCGAAACAGCTGGAGGTCATAGGCGAGGCCGTGTCGTCTTCAGACCGCTActttaaaatcagccacaactTCTATCTCAGAGACAtcaTTAAGCCCGCCTGTCCTGAAGTCAGTGTGAACAAAAGGAAAGTAAATTTAGCACCACCCCCCACCTGGGCCAAACCCACCAGCTACTATCCTCTCGACCATGAAATTCAGTGCAAAAATCTAGATGATGGAAAGGAGAAACCTTGTGATCTGGACCATGACAATAAGGTACCAAAGGGCACCAGTGAGCTGAGGGTTCGCTGCAGAGACTCGCTGCTTCTCTCTCAGTGGAGTGATTGGACACCATGGCATAATGTACACAAGAACAGAAGAAACAAcaggaaagaaggaaaaagaatGGGAAGAAAAGAGACAGCTAAGAATGGGAAGAAAAGAGACAGCTAAGAACGGGAAGAAAAGAGACTGCTGAAACTGCAACAGCGAAAACAAAAACTCCTGTTCTGTTCCATTCTTAGAAGTAGTCTACGATCTTACTGTGAAAATATTACtagagatgcaccaaaatgaaactgaaacagaacaAAATTAACGTCTGGCCAATGCTGAATAATGCATGGGGGTTTTCAcaggtttttattaaatttgcTACATTTTTTAGTCAATTCtatagcctaaatgtatttttgtcttgtttttcaaAAATAAGCTATTGCAAAATTAGaatttgacaatatttattgaacacaattttttttataaaaaaaatagcagtgctgttttaatcatgAATGCTTTCCACacttttagctagctagctacctcagTACCTCAGTACCTATTCTaatctgttttactttttagctagctatttagcagtttagttttttgtctttttacttatttatctgAATATTGCAATTTCtgacaaatatttttgtttgacaAATATTTAGTGCACCTTTATATTTTACTGATTGGTACAAAACAATGTAACCTGTAAAACactgtccttttttttgttaatttgtatttttgtgtgtgtgtttaagaagCAGTACATATGTGGATggatttttaccacattttaacGTTATTTTAATACTGAGTATGGCATACTTTGCCTTTAAAAGAGCATCAATTCTTCTTAGCATGGATTCCACAGGTTCTTTTGAAATTCTGGCTCATGTTCACATGATTAAGCCAAACAATGCCTCCAGGATTTTCAAGAGAACTTATAAACGGTGAAACTCTTAGTTGTTCCACATCCCAAAGGTCTTCTACTGGATTTAGATCTAGTGACTAGAAAGCATGCTCCACTAAGTACACTGCAGCTATTGTCATGTAACTGAAACCAGATTTAGAGACTTCTGCTTTATACTGGAAGTAGCCATTAAAAGATGGGTCAGCTATGTTTATAAATGTCAGCATCAATACGCAAATAGGCTGTGGCATTCAAGCAGTGACTGATATTGAAAGTCTCATAGTTtactaagaaaaacacattcctCACATTGTTATGACACCACCTCCACCAGTGTGAGTTGGGTTAATGGATGGATTTAAGCTGTTGGTCTTGACTGACAGGAAGTGGTTCCTGACACAATCTTCTACTGTTGTAGCCAATCTGCCTTAAATTTGGATGTGGTGTAGTTCATTCTGAAATGCTTTTTTGCTTGCTACAATTGTAGAGATTTGTTATCTATATCTGAGTTACTGTAACCTTTGTATCAGCTCCAACCAGTCTGAACAGCCATTCTTTGTTGACCTATGTTTCATCACCAAGGTATTTTACCTGCAAAACTGCGGCTTCCtggatgttttgtttgtttttctacatAAATCCCCAGGAGATCATCAGTTCTAGATCTATTCAAATCAGCCTGTCTGACACGAACAGTCATACTGAAGTCACAGTAGGTGTCTTCCAGTTTTCTTAGCTTTGATTTATCCATTAGCTTTTTATTGTAGCATGCTCAGCTAACTCGTGTGCAAGGCTTTATGGTTATTTTGTATCTTCTGGTAGGGTCAGTGATACAGTTAATGATGGAACTACAACAATAATGTGGTCATTCGCATCTTTGGTCACCTCCAAAAGTAGTTTGAGTGATTAGATTATGTCTCATATGTGCTTCAATCACATTGTATCCTATTTACAGATCAATATTGTGCTGATATTATGGAGATCACTTTTTCCTCCCCTTTTTGATGGTCTCCGTAAACAAAACTTGACCCTGCATGATTTTTAAGCATCACAAAGCTGGTTGATCACAATTGGCTGATCAGGCTAATAACTTGCTTGGTGAGTGGACTACAAATACGATTTAGGATTTTTTCAATATAAAATGACTTAAAGAATCCTTCTAAAGACCCAGAGGTGCTGTATAGACCTGTCCCTGTTTCTCATTGACACATTTTGTGTACTGACACACAGTGACCAGCAAGGGGCTCTAGAAACTGTTTAAGCACTCCCTGACCACAATGTATGTAGTATAATATACTGTTTCATATGCATGTCCCCAAGCCCGCCCACTTTTTTATTCTCTAGAGTTTTTATCCTTTTAGACCACTTGTGCCACAAACATGCCTTTTTAGACTTAAACCAGTAATTAATGTATGCCTAGCAATATTGATAATAAGTGCAAAGAGCGTGTGTGAGTATgccatt

Function

NR:

description
uncharacterized protein LOC103028022

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244072.3 True 3200 mRNA 0.39 8 7572151 7581205

Neighbor

gene id symbol gene type direction distance location
LOC103026791 NA coding upstream 31896 7525125 ~ 7540255 (+)
LOC103026191 dnaja2l,dnaja2,LOC103026191,LOC108438176,LOC107735561,LOC107705812,LOC107686561 coding upstream 117717 7446143 ~ 7454434 (+)
LOC103040931 LOC108437435,LOC107564898,LOC107686567 coding upstream 200256 7358284 ~ 7371895 (+)
c2cd5 c2cd5 coding upstream 213959 7324500 ~ 7358192 (+)
LOC103040627 NA coding upstream 256596 7274953 ~ 7315555 (+)
vwf vwf coding downstream 32754 7613959 ~ 7655049 (+)
LOC103029157 LOC108439094 coding downstream 75296 7656501 ~ 7689174 (+)
LOC103029792 cers3b,LOC103029792,LOC108264168,LOC108426826 coding downstream 109010 7690215 ~ 7702248 (+)
LOC103030109 LOC108423680 coding downstream 131558 7712763 ~ 7718714 (+)
LOC103030643 LOC103030643 coding downstream 139294 7720499 ~ 7726950 (+)
G156824 utp15,LOC107559694,LOC107686557,LOC107662854 non-coding upstream 13194 7553653 ~ 7558957 (+)
G156731 LOC108437702,LOC108264175 non-coding upstream 159463 7351997 ~ 7412688 (+)
G156697 ddx11,LOC107686596 non-coding upstream 323691 7245764 ~ 7248460 (+)
G156623 gcsh,LOC105912338,LOC107662900,LOC100702337,LOC107564915,LOC102203905,LOC102786853 non-coding upstream 541443 7026598 ~ 7030708 (+)
G156562 NA non-coding upstream 702587 6868260 ~ 6869564 (+)
G156856 pdp2,LOC108423909 non-coding downstream 170998 7752203 ~ 7755664 (+)
G156916 NA non-coding downstream 255550 7836755 ~ 7938030 (+)
LOC107197497 NA non-coding downstream 257521 7838726 ~ 7839633 (+)
LOC107197499 NA non-coding downstream 260452 7841657 ~ 7844823 (+)
LOC107197493 NA non-coding downstream 265278 7846483 ~ 7849878 (+)
LOC111194759 NA other upstream 140583 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 400526 7093507 ~ 7171625 (+)
G156188 NA other upstream 2414751 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 2934861 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 3639988 3929331 ~ 3932163 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 19362 7600567 ~ 7606668 (+)
G157055 NA other downstream 988725 8569930 ~ 8570877 (+)
G157383 NA other downstream 2359624 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2991538 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 3119583 10700788 ~ 10713982 (+)

Expression


Co-expression Network