LOC103029792 (cers3b,LOC103029792,LOC108264168,LOC108426826)


Basic Information

Item Value
gene id LOC103029792
gene name cers3b,LOC103029792,LOC108264168,LOC108426826
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7690215 ~ 7702248 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244078.3
tgtgagaaagaaggTGGAGCGAGGTGTGTAttagagagggagtgtgtgagttCTAGTCAGGTGTGTTCCAGTCAGGTGGAGAAGAGAGGGCAGGGAAAGGCAGgGCGATGCTCAGTGACTGGTTTTGGTGGGATCGTCTGTGGTTGCCTGTGAATGTAACATGGGCAGACCTGCAGGATAAGGAGGGACGCGTGTATGCTCATGTACACCATATCTATATCGTTTTTCCAatagcagtgctgctgctgGGCCTTCGAGTCCTGTTTGAGAGATTCATTGCCCCACTTATCGCTGAAGCCTTTGGAGTGAAAGACAAAGTCCGGCCAAGAGTGTCACACAATCCTGCACTGGAACAGTACTACAGAACACACTCCAAACACCCctcacaggcagaTGTTAGAGGCCTTAGTAAAAAGCTGACCTGGACAGAGAGGCAGGTTGAAAACTGGTTTCGTAGAAGAAGAAACCAGGACAGACCAGGAGTGCTGAAGAAATTCAGAGAAGCCAgCTGGAGGTTTCTGTTTTACCTGTGTGCTTTCCTGGGAGGCCTGCTGGCTCTGCATGACAAACCCTGGTTTTATGATTTACGGGAAGTGTGGGCAGGATTTCCCAAACAGacCCTGCTGGACACTCAGTATTGGTATTACATGtttgaaatgagtttttatggCTCCCTCTTGTTCAGTGTGGCGGTGGACATTAAACGCAAGGATTTTAAGGAGCAGCTGGTGCATCATTGGGCCACTCTGACACTACTGTCGTTCTCTTGGTGTGCAAACTACATCCGCATTGGGACTCTAGTCATGCTGGTGCACGACGCCTCTGATGTTTTACTAGAGTCTGGGAAGATGTTTAATTATGCAGGATGGGAGCGTGCCTGCAACTGCATCTTCGTCCTCTTCACTATTGTATTCATGGTGACCAGGCTGGTCATcttccctttctgGTTGATCCACTGCACGTGGGTGTATCCTCTAGACCAGTTTCAGCCATTTTTTGGCTATTATTTCTTCAACATCATGCTGGTGGTCCTACTGCTGCTACATATATTCTGGGCCTCCCTTATTCTACGCATGGTCAAAAAGTTTCTGTTTGGAGAGATGAAAGGAGATGAAAGAAGTGACGAGGAAGAGGAGGACAGTGCGGATGAAGATCACAACCACAAGCGATTTGTCGGCTCTTCAAATGGACTCTCGAATGGTCATTGACAGCCAGAGTGATACGAGTCCTTCAGTGTCAAGCGCCTTTATGTCCATATTGGACACTCCGATCACTCATTAACTGATTATGTTCTGATTATATTCAGTATATCCATAGCCTTTCATTTTAAGGTGTGTATATGCACATGATGCTGGTTTAGAATAGTGAAGCGCTGCTGTGATGCCTCCTTGTCATATCTTCTTGGATTATCTCCTCCTGCAGCAGCCTCCATGTTCTTCTGTCCTCCtcatccctcctcctcctctcagcCTCTCACCACCTACAAGTATGAAACAGCACCTCCTACTGGGTCCTGAGGAGGAGTGCTGTTACATTTTCAGGACATGTCATCACTTTCTCACCAGACTGCTAGAAGAAGTGCCAGTAtagatataatgtaatataagaaGGTGCCCAAAGTCCCTTTAGCTCAATAAAGGATAAAGAACTTG

Function

symbol description
cers3b Predicted to enable sphingosine N-acyltransferase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including digestive system; otic placode; otic vesicle; pectoral fin; and pronephric duct. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 9. Orthologous to human CERS3 (ceramide synthase 3).

NR:

description
ceramide synthase 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244078.3 True 1652 mRNA 0.47 11 7690215 7702248

Neighbor

gene id symbol gene type direction distance location
LOC103029157 LOC108439094 coding upstream 1041 7656501 ~ 7689174 (+)
vwf vwf coding upstream 35166 7613959 ~ 7655049 (+)
LOC103028022 LOC103028022 coding upstream 109010 7572151 ~ 7581205 (+)
LOC103026791 NA coding upstream 149960 7525125 ~ 7540255 (+)
LOC103026191 dnaja2l,dnaja2,LOC103026191,LOC108438176,LOC107735561,LOC107705812,LOC107686561 coding upstream 235781 7446143 ~ 7454434 (+)
LOC103030109 LOC108423680 coding downstream 10515 7712763 ~ 7718714 (+)
LOC103030643 LOC103030643 coding downstream 18251 7720499 ~ 7726950 (+)
terb1 NA coding downstream 53494 7755742 ~ 7770303 (+)
LOC103034665 LOC108439498 coding downstream 81388 7783636 ~ 7798009 (+)
LOC107197496 arf5,zgc:77650,LOC105912562,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973 coding downstream 121762 7824010 ~ 7828562 (+)
G156824 utp15,LOC107559694,LOC107686557,LOC107662854 non-coding upstream 131258 7553653 ~ 7558957 (+)
G156731 LOC108437702,LOC108264175 non-coding upstream 277527 7351997 ~ 7412688 (+)
G156697 ddx11,LOC107686596 non-coding upstream 441755 7245764 ~ 7248460 (+)
G156623 gcsh,LOC105912338,LOC107662900,LOC100702337,LOC107564915,LOC102203905,LOC102786853 non-coding upstream 659507 7026598 ~ 7030708 (+)
G156562 NA non-coding upstream 820651 6868260 ~ 6869564 (+)
G156856 pdp2,LOC108423909 non-coding downstream 49955 7752203 ~ 7755664 (+)
G156916 NA non-coding downstream 134507 7836755 ~ 7938030 (+)
LOC107197497 NA non-coding downstream 136478 7838726 ~ 7839633 (+)
LOC107197499 NA non-coding downstream 139409 7841657 ~ 7844823 (+)
LOC107197493 NA non-coding downstream 144235 7846483 ~ 7849878 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 83547 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 258647 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 518590 7093507 ~ 7171625 (+)
G156188 NA other upstream 2532815 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3052925 4575668 ~ 4637290 (+)
G157055 NA other downstream 867682 8569930 ~ 8570877 (+)
G157383 NA other downstream 2238581 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2870495 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2998540 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 3049451 10751699 ~ 10754698 (+)

Expression


Co-expression Network