LOC103030109 (LOC108423680)


Basic Information

Item Value
gene id LOC103030109
gene name LOC108423680
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7712763 ~ 7718714 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244079.3
TTGTTTCTCATCATCACCTCTCCATCAGTGTGCAGTGAGCGCATCACACTCACCAGCcagcactcactcactcactcacactcacacacacacaccagtgccATGGACCTGCTCGGCCCGCTCGCGCTGTGGCTCACGGTTCTGTTCTCGGGTCCGCGAGGGGTCCTCGCGCTGGTGCTGCCGGACATCACGGAGCCGGACTTCATCCGCAGATGCGTCCAGGCACACAACGCGCACCGCTCGCGCGCCTCGCCACATGCAGCCAACATGCGcctgatgACCTGGGATGATGCTCTGGCGAAAGGTGCCCGCTCTTGGGCCAGACACTGCAAGGCCTCTCATAATCCCATTCTCCAACACATGGGCCAGGCTCACCCTGACTTCCGGAGGGTGGGGGAGAACATCTGGTTGGGTTCTCCATACTCAGCATTCACAGTAGAGTCAGCAATCCAAACCTGGAACCAAGAGGGTGCCGACTACACTCACAGAAACCGCAGCTGCGCTAGAGTCTGCGGCCATTACACACAGCTAATGTGGGCAACAAGCTACAAGCTTGGCTGTGCTGTCCATGTTTGTTCCGGTGGAATCGACAACTTCTCCACTCATCCACAGTCAACAATTTTTGTATGTGACTATGGTGATGCTGGAAACATGTTTGGATTCCCTCCATATATAGTGGGCCTGGCCTGCAGCAGCTGTGGTAAAGAGAAATGCCAGGATAAACTCTGCACCGATCCAACTCGTGACGAGCCTAAAAGGTATGACTGGTCACCTGGTTGGGACATTATTCCGAAgtcatcagctcacagacttcCTCACTGGCTGAACAGCACTGGACTGCAGCTTCTCATTGGATGGTGCTGGCTTTTTGCAACACATTGAATTCACCCAGTAAACCCAATTCCAAGCTGTTCCAGCCTTATGTCAACGGTTTCGAACTTCTTGCCAATTAACAGGGAATGTTATGAAGGCATAGCACTACGCTGAGTCATATGTGTGGCATCCTCCCTGCTGTAAAGGACTGATGCATCTCCATCGCTTTGTAAATCTTATTCATAGGTCATATATGAATTCTGTATGAACCTTTTGAACTTTCCTAATTTCACGTTTCAGAATAAATAGAAATCAGTACATTT
>XM_007244080.3
TTGTTTCTCATCATCACCTCTCCATCAGTGTGCAGTGAGCGCATCACACTCACCAGCcagcactcactcactcactcacactcacacacacacaccagtgccATGGACCTGCTCGGCCCGCTCGCGCTGTGGCTCACGGTTCTGTTCTCGGGTCCGCGAGGGGTCCTCGCGCTGGTGCTGCCGGACATCACGGAGCCGGACTTCATCCGCAGATGCGTCCAGGCACACAACGCGCACCGCTCGCGCGCCTCGCCACATGCAGCCAACATGCGcctgatgACCTGGGATGATGCTCTGGCGAAAGGTGCCCGCTCTTGGGCCAGACACTGCAAGGCCTCTCATAATCCCATTCTCCAACACATGGGCCAGGCTCACCCTGACTTCCGGAGGGTGGGGGAGAACATCTGGTTGGGTTCTCCATACTCAGCATTCACAGTAGAGTCAGCAATCCAAACCTGGAACCAAGAGGGTGCCGACTACACTCACAGAAACCGCAGCTGCGCTAGAGTCTGCGGCCATTACACACAGCTAATGTGGGCAACAAGCTACAAGCTTGGCTGTGCTGTCCATGTTTGTTCCGGTGGAATCGACAACTTCTCCACTCATCCACAGTCAACAATTTTTGTATGTGACTATGGTGATGCTGGAAACATGTTTGGATTCCCTCCATATATAGTGGGCCTGGCCTGCAGCAGCTGTGGTAAAGAGAAATGCCAGGATAAACTCTGCAGGTATGACTGGTCACCTGGTTGGGACATTATTCCGAAgtcatcagctcacagacttcCTCACTGGCTGAACAGCACTGGACTGCAGCTTCTCATTGGATGGTGCTGGCTTTTTGCAACACATTGAATTCACCCAGTAAACCCAATTCCAAGCTGTTCCAGCCTTATGTCAACGGTTTCGAACTTCTTGCCAATTAACAGGGAATGTTATGAAGGCATAGCACTACGCTGAGTCATATGTGTGGCATCCTCCCTGCTGTAAAGGACTGATGCATCTCCATCGCTTTGTAAATCTTATTCATAGGTCATATATGAATTCTGTATGAACCTTTTGAACTTTCCTAATTTCACGTTTCAGAATAAATAGAAATCAGTACATTT

Function

NR:

description
PREDICTED: GLIPR1-like protein 1

GO: NA

KEGG:

id description
K24834 GLIPR1; glioma pathogenesis-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244079.3 True 1136 mRNA 0.51 6 7712763 7718714
XM_007244080.3 False 1109 mRNA 0.51 5 7712763 7718714

Neighbor

gene id symbol gene type direction distance location
LOC103029792 cers3b,LOC103029792,LOC108264168,LOC108426826 coding upstream 10515 7690215 ~ 7702248 (+)
LOC103029157 LOC108439094 coding upstream 23589 7656501 ~ 7689174 (+)
vwf vwf coding upstream 57714 7613959 ~ 7655049 (+)
LOC103028022 LOC103028022 coding upstream 131558 7572151 ~ 7581205 (+)
LOC103026791 NA coding upstream 172508 7525125 ~ 7540255 (+)
LOC103030643 LOC103030643 coding downstream 1785 7720499 ~ 7726950 (+)
terb1 NA coding downstream 37028 7755742 ~ 7770303 (+)
LOC103034665 LOC108439498 coding downstream 64922 7783636 ~ 7798009 (+)
LOC107197496 arf5,zgc:77650,LOC105912562,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973 coding downstream 105296 7824010 ~ 7828562 (+)
LOC103033491 arf5,zgc:77650,LOC103033491,LOC108439765,LOC108439842,LOC107599983,LOC107599973,LOC105912562 coding downstream 111388 7830102 ~ 7835726 (+)
G156824 utp15,LOC107559694,LOC107686557,LOC107662854 non-coding upstream 153806 7553653 ~ 7558957 (+)
G156731 LOC108437702,LOC108264175 non-coding upstream 300075 7351997 ~ 7412688 (+)
G156697 ddx11,LOC107686596 non-coding upstream 464303 7245764 ~ 7248460 (+)
G156623 gcsh,LOC105912338,LOC107662900,LOC100702337,LOC107564915,LOC102203905,LOC102786853 non-coding upstream 682055 7026598 ~ 7030708 (+)
G156562 NA non-coding upstream 843199 6868260 ~ 6869564 (+)
G156856 pdp2,LOC108423909 non-coding downstream 33489 7752203 ~ 7755664 (+)
G156916 NA non-coding downstream 118041 7836755 ~ 7938030 (+)
LOC107197497 NA non-coding downstream 120012 7838726 ~ 7839633 (+)
LOC107197499 NA non-coding downstream 122943 7841657 ~ 7844823 (+)
LOC107197493 NA non-coding downstream 127769 7846483 ~ 7849878 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 106095 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 281195 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 541138 7093507 ~ 7171625 (+)
G156188 NA other upstream 2555363 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3075473 4575668 ~ 4637290 (+)
G157055 NA other downstream 851216 8569930 ~ 8570877 (+)
G157383 NA other downstream 2222115 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2854029 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2982074 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 3032985 10751699 ~ 10754698 (+)

Expression


Co-expression Network