LOC103030643 (LOC103030643)


Basic Information

Item Value
gene id LOC103030643
gene name LOC103030643
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7720499 ~ 7726950 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244081.3
AACAGGACAGAGTTCAGTTCCACCACACTGACTCTTTCAGTCTGAGGTCCAGACCAGAATTCTGAGCTGCTCTCTACTGTCCAGACGTTGCAGGGGGACCTTTATGGATCAGAGATTTTGGGGGACTTCATGATGCCTCTacattaaacaaatacatttaactgGACCTGGATTCCAGGGCCTGGTACGTAGGAGTGTAAGTGTGAGTGGAGTAGAACTCATCTGTGGGCCGTGGCACCTTGGCGTGTGTGATCAGCTGGAGCGGagtgatcatcatcatcatggtcTCGCTGGTTGCTGGAGTAACCTTGGTCGTACTGGTTTCTATGGTGACACTAGACTTGGTGTGTGGGGGACAAGAGGGAGGCGAGGACTCACGACTCGCACACACTCATCTCACACATACTCAGCGGCATTACACACCTCAGACTGGAGGAGCGAGGAGCACAACGTTCAGCTACATTCAGAGGACTGCACGTTCTGGCATATTTCAAAACAATGGCATATTTGAGGGCATCCGCTTGGCTGATGCTGAATCAGCTGGTCCGTTTCATGGGCATGAAGATAAAGCCAAATTTAAGAATGAAAAGATGGAGATTGCCATGAGGCAGCCTAATGCTATTGATGATAATGAATGTAATGAAATTAACTGTATTGGTAACTTCAATAAGAATGGCAATGCTGGGCCAAAGCATAACAGCATAGGTAATATTGAGTTTAATGGAGTTGTGAAGAATACAGTGCTTACTGATGACCCAATAGGCCACTCTGATAAGGGCCCTGTCGTGCTCACGCATTCTGGCCCAGTGCGTGGACTCACCTTGGACAAAGCTCATGTGTTTTACGGCATCCCGTATGCAGCTCCTCCTGTAGGCCCGAAACGCTGGACTGCCCCTAAGCCTGTATCACCCTGGACACAGCCATATGATGCCACCTTTCCTAGGCCTGCATGTATGCAGGTTTGTGCTGGGGAGTTCTCAGAGATGTGTCCTCCTAAGATAAGTGAGGACTGCTTGTATCTGAATGTGTTTGTTCCACTGAGTGTGGACCTATCAAAGCCAAAGACCAAAGCCCTGCCTGTTATGGTGTGGATCCATGGAGGTGACTTCATTGCTGGCTCTGCCTCTAAACCTCTGTATGATGGACGCTTCATTAGTAACTACAGCAACACTTTGGTAGTAAATATGGAGTACCGCTTAGGAGCGTTTGGGTTCCTTGTGACTGGAAAAGACCCTCAGAGCTCTGCAGTTGGAAACTATGGAATTCTGGATCAACAGGCAGCACTGCAGTGGGTCCATCAAAACATTGCTGCCTTTGGTGGAGACCCAGCCAAGgtgaCTCTGTTTGGTGAAAGTGCTGGAGCACAGTCCGTTTCTTTGCACCTCATGATGCAGATCAGTGAGCCTCTGTTCAGACATGCTGCCGTTCAGAGTCAGCCATTCTCCATCCCACTCAAAACAAGGTTTGATGCCATGAAGCTGGGCAGGGACTTTGTGAAGCTGACTAACTGCTCTGCGTCTGACCTGGCATGCCTGCGCTCCCTCAGCTCACACACCATCCTCAAAGCTCAGGTTAAAGCAGGTTCTAAAATCATCAACCCCTTCCGCTTCTTGGAGATGTTTGAGACCTGGGGCCCATACATCGATGGACagctgctcaaagagcagccaaTAACAGCCTTCCAAAAGGGTCGCTGGCAAAGCTACAAGCCTGTGATACTAGGAACTACATCTGAAGAAGGTGTGATCTTCGTATATGGAGTCTTCACTGAGTCTGTGTCCGTGCTGGAGTGCATAGTCTACACCACAGCCATCTTCAAACAACACACTCTCAGCATCCTCTACAAATACGTGCCTCTCTACCACAACCAGGACAGACGCATCATGCTCTCACAGATTGTGACAgactttgtgtttctgtgtccaACTCGACGCTCAGCTCGCTCTGCGATAAGTTTGGGCGGATCTGTCTGGATGTATGTATTTGACCACTCCCCTTCTGATCACAACATATGGTCAGGACTTACATTCTGTTACGATCGTGCATGTCATGGGGCGGAACTTCCCTTCCTGTTTGACTCTGCCCCAGAGACAAACCTCACACTCACAGCTCAGGAGACTCACTTGGCCAATCAGATGGTGTGTTATTGGGGCGCTTTCGCTCACTCTGGAGACCCAAACTCCCGCACTGAGCAAACTCCTTTCTGCAGTCAGCAGCGGCTTCCTGTCTGGCCTCGGTACACGTCTGCAGAGAGCTGGCCGATACTGAATTTCACTCTGCAGTCTCACCCTCAGCATGGAAACAGGGAGGACATCTGTGACTTCTGGGATGAGCTGGACATTTATTAATAGAATACACTCGTGATGTTTTCTGAGTTGCAGTCAGGAGTTCATAGAGTAAAATTGTTCTCAGCAGATTTTTGTTCAGTATTTGTTGAGTATAACAAGTTATTCTACTGTAGGACCTAATCATTAAACATTTGGAGTTTACAGGCTAGAAAGAAAGCTTTATAAGACTTTTATGATCGCTAAACGTGACTGAATGAGTGACTGAATGAGTGACTGAATGAGTGACTGAATGAGCGACTAGCCAGATTTATGATGTGCTTTCACATCTAATAAACATCATTGAGCTTATgacacaataaaatacataagtatcaaaaaaaa

Function

NR:

description
cAMP-regulated D2 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244081.3 True 2669 mRNA 0.48 8 7720499 7726950

Neighbor

gene id symbol gene type direction distance location
LOC103030109 LOC108423680 coding upstream 1785 7712763 ~ 7718714 (+)
LOC103029792 cers3b,LOC103029792,LOC108264168,LOC108426826 coding upstream 18251 7690215 ~ 7702248 (+)
LOC103029157 LOC108439094 coding upstream 31325 7656501 ~ 7689174 (+)
vwf vwf coding upstream 65450 7613959 ~ 7655049 (+)
LOC103028022 LOC103028022 coding upstream 139294 7572151 ~ 7581205 (+)
terb1 NA coding downstream 28792 7755742 ~ 7770303 (+)
LOC103034665 LOC108439498 coding downstream 56686 7783636 ~ 7798009 (+)
LOC107197496 arf5,zgc:77650,LOC105912562,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973 coding downstream 97060 7824010 ~ 7828562 (+)
LOC103033491 arf5,zgc:77650,LOC103033491,LOC108439765,LOC108439842,LOC107599983,LOC107599973,LOC105912562 coding downstream 103152 7830102 ~ 7835726 (+)
LOC103032733 LOC108439982 coding downstream 124975 7851925 ~ 7860510 (+)
G156824 utp15,LOC107559694,LOC107686557,LOC107662854 non-coding upstream 161542 7553653 ~ 7558957 (+)
G156731 LOC108437702,LOC108264175 non-coding upstream 307811 7351997 ~ 7412688 (+)
G156697 ddx11,LOC107686596 non-coding upstream 472039 7245764 ~ 7248460 (+)
G156623 gcsh,LOC105912338,LOC107662900,LOC100702337,LOC107564915,LOC102203905,LOC102786853 non-coding upstream 689791 7026598 ~ 7030708 (+)
G156562 NA non-coding upstream 850935 6868260 ~ 6869564 (+)
G156856 pdp2,LOC108423909 non-coding downstream 25253 7752203 ~ 7755664 (+)
G156916 NA non-coding downstream 109805 7836755 ~ 7938030 (+)
LOC107197497 NA non-coding downstream 111776 7838726 ~ 7839633 (+)
LOC107197499 NA non-coding downstream 114707 7841657 ~ 7844823 (+)
LOC107197493 NA non-coding downstream 119533 7846483 ~ 7849878 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 113831 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 288931 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 548874 7093507 ~ 7171625 (+)
G156188 NA other upstream 2563099 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3083209 4575668 ~ 4637290 (+)
G157055 NA other downstream 842980 8569930 ~ 8570877 (+)
G157383 NA other downstream 2213879 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2845793 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2973838 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 3024749 10751699 ~ 10754698 (+)

Expression


Co-expression Network