LOC103034665 (LOC108439498)


Basic Information

Item Value
gene id LOC103034665
gene name LOC108439498
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7783636 ~ 7798009 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244092.3
TGCTGAACTGAGTACAGACCACCAACCAGAATTATACAGCCAACACTGAGAGATGACCCAATTGGTGCACCAATAGATTCAGAGCTTACATGTCTCTGGTTTGGTAGAACAGCTAGCTAGGAGTGTGTTATAGAGTGGGCAGTAGGTGGATACACAGTGTTGTCTCACATTGTTTATGAAAAAGCTTCTATACACCACAGTAGTCTTTAGTAAGGTCTTAAGTGAACATGGGGATCATTATTAGCACCTAATGTATGGATATTTTATTTCCCACCCGTTTTCGACAAACTCTATCCTTATACAGACAGTAAGGTTAGCTTGTGGAGCGCTCCACCACTGGCCAATGTAATTCGAGGGGCGGGGCTTAGCCCAAAGCGGGTGGGGAATAAACTAAACAGTCTTAGATTACGCTCACTGCACTCTGCCGTCCATCCTCACTCTCAGAAACTCAGATAACGGAGAGACCGTCACTGCTGTAGGAGGACCAGCCTCTGGAACTTCTCAGCCTCTTACTTCAGCATCATTTTGATTTAGAGCTTTTggtttaaacatgtattttcgTTTTTCTTGAGGTGACGTggagagggttttttttcagtggAGAAATGTCGACGTGCTGGAAGAAAGCCTCAGCATCTTCTAGTCGATGAGATGTAGACAGCTGTTGGTCTGCTGGTATTCTCTTAAGACTACAGCAAGAGATCAAGAGGTGCTGGACTCGGACACGTGCTGAGATGCAGGCAGTTTGGCTTCTGCTCATCCTGTTAGAGGAAGGCTTTGCATCGACACTGAACGGTAAAGtaTTGTCTGAGAATGTGGCTGAATCTAAAAAGCGACCGACTCAGTGTGGGTCATGGGTACGCAACCCCAATGGAGGAATGTTCCACTCCCCGAACTTCCCCAACACCTACCCACCTAACAAAGACTGTGTGTATGTACTTGAGGCCCTGCCAAGAAACAGGATTGAACTGGTGTTTGATGAAAATTTCTTCATCGAGCCGTCTTTTGAGTGCCGGTTTGACCACCTTGAGATCCGTGATGGACCCTTTGGCTTCTCTCCACTCATAAACCGTTTTTGTGGATCTCAGAGTCCCGGGACAGTCGCCTCCACTGGACGCTTCATGTGGATCAAGTTTACCAGTGATGAGGAGCTGGAGGGCATGGGCTTTCGGGTGGAATACACTTTTACTGTTGATCCTGACTTTCATCTCCATGAAGGTGGACTGTTGAATCCCATTCCAGACTGCCAGTTTGAGCTGAATGGGCCCGATGGCTTAATCAGATCCAGtcaggtggaggaagagaataAAGTGAAATCGGATGAAGCAGTGGACTGCATATGGACTATCCGAGCTCCACCTAACAACAGGATCTTTTTGCGTTTCTTGGAGTATCAGTTGGAGAACTCCAACGAGTGTAAGAAGAACTTTGTAGCTGTGTATGATGGCAGCAATGCTATTGAGGACCTCAAGGCCAAGTTCTGCAGCACCGTTGCGAACGACTTGATGCTTGATAATGAAGTGGGGGTGGTCAGAATGTGGGCTGACGAGACGAGCAGACTGAGCAGATTCCGCATGCTTTTCACCTTCTTTGCTGATCCTCCTTGTATGTCCAATGCCTTCTTTTGTGACACCAACATGTGTATCAATCAGACCCTGGTGTGCAATGGTATTCAGAACTGTGTGTTTCCCTGGGATGAGAACAACTGCCAAGaaacaaaaaccAAAAGTGTTTTCCATCAGATGAGTAAGACTCATAGCACGGTGATTGCAGCGTCCACCGGTGTGGTCCTTCTTCTCCTCATCTTATCAGTGCTGGTGCAGATGAAACAGCCCAGAAAGAAGGTGTTGCCGCGTAAGAGCCTGTTCAGTGCTGCTGAGCTGCAGGAGGTGCTGGAGCCTCCTCATTACGAGCTCCTCTCCCTGCGTGAGCGGGAGGTGCCGGATGAGCTGGCCAAGCTATCCGAGGAGCTGGAGAGCTTCCAGAAGCTTCGCCGCTGCTCCTCCGCATCCCGCTGCATCCGCGAGCATCACTGCGGCGCACCTGGCAGCGCCTGCCCTGCCGGCCTGGCGGCCAGAGTGCAGCAGCTGTCTCAGTGCTCTGATGACCTGTCAGTGGGGCACAGTGACAGGGGCCTTGCTAGCTATCCCAGCCGGAGGAGCGGCCAcgggccacacacacactccctgccCCATGGTGCACACTCACAAATGCATACACACAGCATGCAGAGCCTGCGGGAGGCCATGGAGGATGGGGCATACGGGCTGGAGGAGCGGGTGATGGAGGAGATGGGCTGCAGGGATGTGTTCAGTCATGGAGAGATGTTTGGACGAGGAGACGGGTTCAGCCGTGGTGGCAGCGCAGTCATGGTGCGGAACCACGGCAACCCCGTCCAGCATCGGTCCCTGTCCATGGACTTTTGAACAGAGTAGAGCAGTAAGTCTGGAGATAAAATGTATGCACTGGAACTTCTAAATGCACTGGAAAATCCACTGGTTTGGACTTCTAGAAACTGGTGAAACTGGATAAACTGATCAATAATCTCCTATAGTTGCTTTTCAGTTATTGTACTATGCAATCAAAGGCCATACCATTGACGTTTGACTCCTAACTGATCAGCAGAAACTGCCTGTTGATGAGGAACATCATCTTAATTCTGTCCATGTCTTAATTCTGTATGTTGACACCCCTCCTATTGAAAAAAATCCTCTACCTTAAGTTGTACCCAGTGCTGACCCAAATGTGCAAACATGCACACAGCTTGTCTTATCCTTGTAGAGAAGTGTTGCCAATAGAAacggactctctggagcagagtaacattgagctgtggagctatGTTTTCTGTattgatggagctccatcaaaaacctttgggatgagttagagaTTTGAGAGTAATGTAGGGtggtaatcatccaacatcttgaCCTTATTAACACCCTAACCTTACTGTCATTGACTGCAATCAGATCCTCTCCCCAATGCTGCAAAATCTAGTAGTAAGTCTTCCCTgcattaacttttttaataccattgatttcagaaaaaaaaaaaacaattgactAGCAGTTGTCCCAATACATTTGTCCTTATAGTGTGTGTGCTCTGCGTAGTAAGTTCTTCTGTAGAAACAGTAACTAAACTTTACTGAACAAAATTTGTATAGAACAATTCCTGTTCAAGTAGGTGTAGCACACAGCTTCTTTTAAAACCTACATTTTAAGGCTGATGTCCGAGATATTGTCCACATGCTCTTTTAAACTGCCCATTTATGGCATTTCAGTGTTCTGGAAAGCTTGTCCATCACAACTTCACAAAAGTTGTTCAAATGGATCAGTGGTAGGAGGAGCATAGTTAGGTCTCTTATCTTAAAGGAGTTGCTAGGTAGATCTGCACTCCTATGCTTTAGATGATTGTTTCATGGGGTTTAAAAACTGATAATTGGAAATGTCTATAATTGTCATAAATGTATAAGAATGtaacaatttaaatatttttcacatcccaattaatttaaatatctaaCTCTATTTTACAACAAACTAAAAGTCTAAAAAGTTTTAGTTTGATATCTTAGgagttaaatataaaatgctttGCTGGTGAAGACATTCTTAGACAAGCTCAGGACTGGATTGACGAGCCAAATTTTTGTCATGTTTCTGCTGCAGTGTAAACATGGGTGTAAACATGGTAGTATTATAATAGGCTTTAGCTAAATCGAAAGTCCCATTCACAGCAccacctgctgctgctggatgtgtGGATAAACAGACAGATGTAGGTCAGAGGGGttataaacactaaaaaacacaacagcattaGAGCACTCATCATAGAAACTGTAACCAATACTAGTTCTGCTCTGtttacacacttaaacacaacaTTTCATCAATGTTTTCTGTCATTTACAATACATACACAGATATACATTAGATATATCTTTGTTTTTATCTTTGTAGCAGCTAATTTTTTAGTTTACcttacatttttagaaactaGTCTTAATAAAATGTTCAAGATATCACCTTATTTAATTTCGATCACAGAAATTGCAATATTACCAACATTGATTTGACCTGGGTTATCTTACAATACTTATTATTAAAGAGTATGTTGCATTAGTAATTAAGACCTTTGTCCCTTTCCATATCGCAGTGTTTGTTGTCa

Function

NR:

description
PREDICTED: neuropilin and tolloid-like protein 2 isoform X2

GO: NA

KEGG:

id description
K24360 NETO; neuropilin and tolloid-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244092.3 True 4179 mRNA 0.44 10 7783636 7798009

Neighbor

gene id symbol gene type direction distance location
terb1 NA coding upstream 13333 7755742 ~ 7770303 (+)
LOC103030643 LOC103030643 coding upstream 56686 7720499 ~ 7726950 (+)
LOC103030109 LOC108423680 coding upstream 64922 7712763 ~ 7718714 (+)
LOC103029792 cers3b,LOC103029792,LOC108264168,LOC108426826 coding upstream 81388 7690215 ~ 7702248 (+)
LOC103029157 LOC108439094 coding upstream 94462 7656501 ~ 7689174 (+)
LOC107197496 arf5,zgc:77650,LOC105912562,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973 coding downstream 26001 7824010 ~ 7828562 (+)
LOC103033491 arf5,zgc:77650,LOC103033491,LOC108439765,LOC108439842,LOC107599983,LOC107599973,LOC105912562 coding downstream 32093 7830102 ~ 7835726 (+)
LOC103032733 LOC108439982 coding downstream 53916 7851925 ~ 7860510 (+)
odf3b NA coding downstream 64063 7862072 ~ 7866578 (+)
rabl2b rabl2b,rabl2,rabl2a,LOC107662875,LOC107600941 coding downstream 77015 7875024 ~ 7880960 (+)
G156856 pdp2,LOC108423909 non-coding upstream 27972 7752203 ~ 7755664 (+)
G156824 utp15,LOC107559694,LOC107686557,LOC107662854 non-coding upstream 224679 7553653 ~ 7558957 (+)
G156731 LOC108437702,LOC108264175 non-coding upstream 370948 7351997 ~ 7412688 (+)
G156697 ddx11,LOC107686596 non-coding upstream 535176 7245764 ~ 7248460 (+)
G156623 gcsh,LOC105912338,LOC107662900,LOC100702337,LOC107564915,LOC102203905,LOC102786853 non-coding upstream 752928 7026598 ~ 7030708 (+)
G156916 NA non-coding downstream 38746 7836755 ~ 7938030 (+)
LOC107197497 NA non-coding downstream 40717 7838726 ~ 7839633 (+)
LOC107197499 NA non-coding downstream 43648 7841657 ~ 7844823 (+)
LOC107197493 NA non-coding downstream 48474 7846483 ~ 7849878 (+)
G156917 NA non-coding downstream 48606 7846615 ~ 7860640 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 176968 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 352068 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 612011 7093507 ~ 7171625 (+)
G156188 NA other upstream 2626236 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3146346 4575668 ~ 4637290 (+)
G157055 NA other downstream 771921 8569930 ~ 8570877 (+)
G157383 NA other downstream 2142820 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2774734 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2902779 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 2953690 10751699 ~ 10754698 (+)

Expression


Co-expression Network