LOC103025173 (pias1b,LOC108424062,LOC108264782,LOC107596961,LOC107738708)


Basic Information

Item Value
gene id LOC103025173
gene name pias1b,LOC108424062,LOC108264782,LOC107596961,LOC107738708
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17577392 ~ 17604549 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249145.3
CGCGCGTGAGAGCGGCCGTTAGTGGAGCGGCGTCTCGCTCACGTGCCGAGAGCCCAGCACGCCTGCGCCACACTAACAAGATGGCGGAGAGTGCGGAATTGAAGCAAATGGTGATGAGCCTGCGTGTCTCAGAGCTTCAAGTTCTCCTGGGATACGCAGGGCGTAACAAGCACGGAAGAAAGCATGAACTCTTGACTAAAGCACTCCACTTATTGAAAGCTGGCTGCAGCCCTGCCGTGCAGATGAAGATCAAGGAGCTGTACCGCCGCCGCTTCCCTACAAAGATGGTGTCTCCCACAGACCTCTCCCTGCCTGGGGTCCACTCCACGACAGGCGGGGGTCACGGAGGCTTGCCCACCAGTCTGACCCAGCTGGGCTTTGACAGCCACGGCGCTCCCTCGCCTCTGCTGCCTGTCTCACTTTTGGGGCCCAAGCATGAGCTGGGCCTTCCACACCTACCCTCTGCCCTGCACCCTGTTCACCCAGATGTCAAGCTCCAGAGGCTGCCTTTCTATGACACGTTGGATGAGTTGATCAAGCCCACCAGCCTGGCATCAGACAACAATCAGAGGTTTCAGGAAACATGCTTCGCTTTTGCTTTGACACCTCAGCAAGTCCAGCAGATCAGCAGCTCGATGGACATCTCTGGGACCAAATGTGACTTCGCAGTACAGGTTCAGCTAAGGTTTTGCCTATCAGAGACAAGTTGTCCTCAGGAAGACCATTTCCCTCCCAACCTTTGTGTGAAAGTGAATGGGAAGCCCTGTAACCTTCCTGGCTATCTTCCACCAACTAAAAATGGAGTGGAGCCAAAGCGACCAAGCAGACCTATCAACATTACCTCTCTTGTCCGGTTGTCCACAACAGTACCCAACACTATTGTGGTGTCTTGGACGTCAGAAATCGGAAGGAGTTATTCCATGGCTGTGTACCTTGTCCGACAACAGTCCTCTTCAGTGTTGCTACAGAGACTTCGGTCGAAAGGCATCAGGAACCCAGACCACTCTAGAGCACTCATTAAAGAGAAGCTGACGGCTGACCCTGACAGTGAGATTGCTACAACTAGTCTGAGAGTCTCTCTACTTTGTCCGCTGGGGAAGATGCGGCTGATGATTCCCTGTCGAGCGCTGACCTGCTCGCACCTGCAGTGCTTTGACGCTACGCTCTACATCCAAATGAACGAGAAGAAACCCACCTGGGTGTGTCCAGTCTGTGACAAAAAGGCCCCATACGAGCACCTCATCATTGACGGGTTGTTTATGGAGAtactaaacagctgtgtagaCTGCGATGAAATCCAGTTTAAGGAGGACGGCAACTGGGCTCCAATGAGGTCTAAAAAGGTGGTGCAAGAGGTATCCGCCTCCTCCAACGGCCTGGAGGgTTCATGTAGATCAGTGGTTTCTGAGCACAGAAACAGTTCATCcaataacagtagtaacagtaaaaaagtggaAGTGATTGACCTGACTCTGGACAGCTCCtcagatgatgataatgatgacgAGCCGCCTTCCAAACGAGCTTGTCCATCTCTGTCACCCATTTCACCTCCAGTCAGCAAAGGGGTGTTAAATCTTCATCGGGCATCACCAGTGACGCGAGCTCCCAGCATGCCAGCAGTGGAGACAAACTACAtccctcctccccctccacttATTCAGGATTATCGTCCCTATTACCACACACCCAGTGACCTACCAGAGCTGAACTTCTTTTCATTTCTACAAGGGGAAAATCATCCGCATTACAACATGGTGATGGCAGCAGCAGCCGCAGCATCCGTAGCTTCGGAAGATCATGAGCTCCTCCTGAACCGCTTCATGCCCTACAACTCGCAGCTGTACCTGGACCAGGCGGGCACACCGGTGAGCGGCTCGCTGGCACCAGCCAACGGCAGTGGGGGGAGCAGCAGtggtagcagcagcagcttggTGTCATCCAGCAGCTTGCGGGACGCCCACCCCCACAGCAGTGTGTCCCGCTCACGGTCAGACGCTGCCGCCTCGGTCATATACGGCTCCATCCCCGACGTCATCTCACTGGACTGACCTCACGAGGGCGCCACACCTGGCCCTTATCATTATCCATGGGAGTCGAGAGAAGTTCCATGCACTCAGAGAGGATTTAAACACGaatgagaaagggagagaagaggagaacagaaaaataaaagagagaactTTTGtataaagaagagaagaaaaagaagaagaaaaaatgctGTACAGAGAAGAAATATCTATTTTCAGTTTTACTTTTGTATATAAACAGGACGCTGCCTGCTCAGTGCGTGACTTCAGttgatattttttgtgtggaTACTGAAGATGTTTTTTCACTGCTCTGTGTCTCGTCCCTTGATCTTATTCTTTACCTTTTATACTCTTTTTGCTATTTCGTTTCACCACAAACACTTATTTTAGTCCTAGTCATGGAATTAGACTCATCCTTGGTCAGTTTTTCCTTGTCTTGACGTAAGACTCTGGCCTCAAAacgtttgttttgtttttttgaggggtcagtaatgttatttAAGGACACTTTCTTGTGCAGGTAATTTATAAGGCTTTAACTTATGTAGTTTGTATGCTGTATAAAAGCATTTCCTTACGCCATTACAGGATCGAGCCATGAGGCACACTCGAGACGGAAGCGGCAGTCACCCATTATTTCAACTTTTGTTGGCATTTTGCTTTCATTTAGCTCTCCAAATGGTTTGCAAAAGATGTGTGGATGAAGAGTTATGGAGAGACCACTGTTGCACAGATCtcacataatttaaaatgaGTTCTTTATCAGCTGATCAATGAGTTGGGGCAGAGCATCAAAGGTGTCAGGTACTATGATGTGatgcatttatttatctaatcaCCTGGGTGAGTTACAACTGAAGGCTAAAGAAATTGCAGTATTATATAACCTTGAGACCTTAAAGGTAAATTAAATTTCATTGTAATTCACACTCATTTATGAGGCGACTGGTAAGAGGATATTTATTgtcactgtcatgcaaaaaccctGTATCTCTGTTTTGTTTCATTGTGTCAAACTTTCATGATGACCAGTTCAGTAGATTTGGAAAAAAGTATTGATTGGTGACAGTGACTATATTATAATGTTGTAAACGTTATATAAGGTGTGCATGCTCTCCACACACCGGTCAAAAAGATTAACACATGTATAAACCAGAAAACATTGATTTTACATCTAAAATCTCAAAGAGGAGATTGCAATTGTGTTGGCTAGCAGAAATCGGTTTAACAGGCATTGATTATATTGATAATCAAGGTTTTCTTCACTGGTTTGGGTTAAGAGTTAAGTTAATTCTTATGCAACTCTACCACAGCGCCCTGTGGTAAACAGTCTCAGAGATGCTTTAAAGGGATAGTTTAACATTTTGATAGTTGAGTCTGATCAAATGAGCAGTAAAGAAGATCTATAGAATGACCAGATTCTGATTTTCATCATTTCATTCAGTGGGTCGACAcatgatttacattttttaaaagggcAGAGTTCTTTATACCTTTTTTAGGATAGGTAGTGGCTTTGCCTAAAACCCTAACGACTCCCAACTCTTCGGAAGCTTAAGTGCTTCTTTTGCATTGGAGAAATTACATTTTGTTGATGGTTTCTATAAAAGCCTTttgaaaacaaagaaagagtTCCATCACAATTATGAGtcaaaggctacgttcacattgcAAAACCTCATTAACCTAttctaataatttaatttagctaTCTTGAAAATtcgaaaatgtaaatgtaggaCCTGTATCTGTTTAGATACTAGATACCATACACACAAGTGAATAGCACGTTCATAGAGTTAAGTGGATGTATGATATACAATCCGACTGTTCACACTCATGCCTACAATTCAGATGTCAGATCAACtgacaaatataaaaatgaatcaaGTAATTttgaaaattttgaaaaaatgatCTTAGTGACAATAGTCTTATAATTAGAGTAAACGTTGCCAAAGAACCCATTTCAGTACTGTTTAGAACCTGACTTTTCTCAAAGTGTGCATTTGTATAGTATTTTCACTGTCATTAAATTCAGCTTACAGTTATTTAATTTAGTCTTTTTGTagcatttcttttggtccattGATAATGAAATTTGTATGTACAATGAAAGGAACAAATGCCAGACTCAGACTGTCAAAGCCAAAAGCGACTAAAACGGAAATACTTGGTTTTGCTTAAcaagaataatataaaaaaaatgtttatattatcaGCATTTTATGAATCTTTTGCCCTCATGAATTGTCAACAGTTCAAAGAAGATTTCTACAGCAACAGTTCCACAGACGTTCGGGTTATTCTTCAGACAACTTGTGACTGGATGAAGTGGCTTTGTGAAATTGTGTAGGCTTACTTCAGAAAAACTGCCATTTCCAAAAATGTTCATCTATCCTTTTATAGTCTATGATGTTTCTGCAGGTGATCTCACAGCCACATCATCTTTCCTGCCCCCTCCCGTCCCTTTGTataaaactgaatttatttatttttatctatatattatatttttactatCTTTGACAATTATGCTTTACTGTCATTGAGCATTTATTTCCTCAGTAATTATTTAAAGAGCTCTCGTCACTCGCTTTGCATTGTTAACAAGTATCTTTTATTTGTCCTtgtgtctctcattctttcatGATGCTCTTTGTCTGTGCTGTACCAGATGCTTGAGGCATCAATTCCATCTCCAGAATCTATCATGCTGTGTcagatttgacttttttttttttggttggtgTTTTTGTTGCTATTAAACACTTGAACAATGAATGCCAGCTGAGTGTGAACATCCTCTGGCTCCATTGTGACATTTAAGAACCTTTAAGAAGTGATTCAAGACCCCTCGTCAGACGAGACAGGCTGCAGCTCAATTGCTCACGGTCACTGTGGTCCAGACACTGGCTATTTTGAAGGCATACATTCATACATGTAgaccttatacacacacacagatatgcgATGCATCTGATAAGAATcatcacacacatgcactgagGGACCATGAACTGATCTCAGCATCTCCAAAAGGAGATTACACTGAATTTAAGCCATGAAGATAAGTCGGTCAGTATCTAGCTTCAGTGAGGGGACCtgtgatttattcatttttatgatTACTCCcccacaaacacatacacagataATTGCCAAGCACACAGTCTTTATTACACATATTGAAACAACCCCCAGTCTTTCATTATTTTCAGACGAGAAACAGAATCATACCACTAGACACGGGAGTGGGGCCCATTTTAGCTGTACCAGTAAAGGCTGGCCAGCATGAGTTCTCTCTGCCTTAAAttcttgtattattttatgGTACATTATGAGAgaaatcattatgtatatcaaGCCACTATTGGTTTGtacaaaatatcaaataaattatttattatttgctttGGAATACATTGTTTACCTAATGAATGTCACTTGTTTATGTAGAGAGCGGTTtagctgtaataaaacaaatacaactaTTAA

Function

symbol description
pias1b Predicted to enable SUMO ligase activity and transcription coregulator activity. Predicted to be involved in protein sumoylation and regulation of transcription by RNA polymerase II. Predicted to be located in nuclear speck. Orthologous to several human genes including PIAS1 (protein inhibitor of activated STAT 1).

NR:

description
PREDICTED: E3 SUMO-protein ligase PIAS1-like isoform X1

GO: NA

KEGG:

id description
K04706 PIAS1; E3 SUMO-protein ligase PIAS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249145.3 True 5534 mRNA 0.43 15 17577392 17604549

Neighbor

gene id symbol gene type direction distance location
LOC103029280 skor1 coding upstream 5475 17563875 ~ 17571917 (+)
c18h15orf61 cunh15orf61,c4h15orf61,LOC103025902,LOC107738714,LOC107583911,LOC107718314,LOC107686305,LOC107596966 coding upstream 78621 17493793 ~ 17498771 (+)
iqch NA coding upstream 84461 17458015 ~ 17492931 (+)
LOC103027004 smad3,LOC108424035,LOC105892538,LOC103353199,LOC107740443 coding upstream 129599 17425218 ~ 17447793 (+)
LOC107197433 NA coding upstream 275710 17295207 ~ 17301682 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding downstream 6328 17610877 ~ 17622128 (+)
LOC103024336 NA coding downstream 20505 17625054 ~ 17645249 (+)
LOC103039437 tle3a,LOC108424090,LOC107596960,LOC107672253,LOC108264729 coding downstream 159142 17763691 ~ 17797748 (+)
ddb2 ddb2 coding downstream 344581 17949130 ~ 17958434 (+)
kbtbd4 kbtbd4,LOC107708223,LOC107738697,LOC107596956,LOC107672308 coding downstream 359834 17964383 ~ 17968936 (+)
G159017 aagab non-coding upstream 120415 17455315 ~ 17456977 (+)
G159014 NA non-coding upstream 126060 17448832 ~ 17451332 (+)
G158991 NA non-coding upstream 293510 17283467 ~ 17283882 (+)
G158882 rpl4 non-coding upstream 400200 17173067 ~ 17177192 (+)
G158891 NA non-coding upstream 418941 17157142 ~ 17158451 (+)
G159115 NA non-coding downstream 265458 17870007 ~ 17870468 (+)
G159120 kif23,LOC107686310 non-coding downstream 322439 17926988 ~ 17938088 (+)
G159122 NA non-coding downstream 337767 17942316 ~ 17946683 (+)
G159129 NA non-coding downstream 391149 17995698 ~ 17996728 (+)
G159182 NA non-coding downstream 503614 18108163 ~ 18109539 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 205186 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 388141 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 405164 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 778992 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 852183 16654136 ~ 16725209 (+)
rapsn rapsn other downstream 366547 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 920979 18525528 ~ 18576437 (+)
G159666 NA other downstream 2580967 20185516 ~ 20186919 (+)
G159728 NA other downstream 3132049 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 3404753 21009302 ~ 21011794 (+)

Expression


Co-expression Network