iqch


Basic Information

Item Value
gene id iqch
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17458015 ~ 17492931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249149.3
gctctgtctctgtgggtgcaggagagcggaggcgCGCGCAATTCCGTCGTTGCCAAGCGACTCACTTGCTGTAGAAACCAAAGACAAACGCAGCACTAAGTTAGTTAACTAGCTTAGCAGCTTctgaataaaaaagtttttaaacgGACCCTGAAAGATAAATGTTCTCTTTAGGTTTTAACTAAAGAACCTAAACAATGGCGGACACTGTTCAAACTGGAGACGAAGTTGGGCGGATACTCGTACAGGTGCAGAATGATTTGAGTCAGCTGAAAAAGAGTCTAAGCCGGGTAATCATTTCTGAGCCAGGCGAGACACTGGACATTCAAGTGCTGGATGCGGCGATAAGCAGGACTGAGATTGGCATTAAgAAACATGCAGAGGAATATCTGaagactgtaaataaacaagtaTCGACACTTCCTATTATTGAagacaacaaaaagaaaactagGAAGATTGCCAAATGGCAGCCATCCCCCGAGAGCATCCCAAACTTGCTACCTCGGAAATACATGATTGTTGGAGCATCTCCTGGGGAGAAGCACAAAGCAGCGTTTGCCATGCGACTGCTATACAACCCTTCTCACCCAAAGAACAGAGAGCTCATTCACCAGAACTATGGAATTCAGCTTCCTGATTTGCAGAAGAAAACTGGGTCCAATGTGGGAGCCAAAAAAGTGGATACCAGTCCTAAGGTGGGAAGCTCAGCTGTTGTACCTGCAGAGGTTCGGAACAACAACCTCCACTTATGTCCCAACGACATGAAAGCAGACATTGCCAGTCCAGAAAAGCAAGATCCACCACCCTCAGCAGCTGATCTCTGCTTGCAGACGTTTGTTAAGCCCAAGGATAGCAGCCTCAGTAAGATAGGTATGTTTGAAAGAGCGGGAAAACGGCAGACGGACGTGAATCAGAGTAAGGATATTGTGCAGGCACACAGAATCTCTCACCTTCATCGTCCGCCCACGTGGACCATCACCACTCCGCCTCCCACTGCTGCCTCCAACAGCAAACTCCCCCAAGGGCCAGCTCGACTCAGCCCTCTCAGTCCTCAGTGTGCTCCAGCGCTACCACCAGTTTCCATTAGCAAACACTGCTTCAGCATAGTAGATGGCCGGATTGACCCATGTTGTACGGAATTCTGTGCGTTCAAAAAGCAGTACTGTCTGTGTTGGGGGCCCCTTATGGAGGCTCTTTGGCGGCTGGAACAACTGATGCAGGAATATGCTGTGCCGCACGCCCGAGTGTGTGACCAACGGCTGGTGGCTCTGATGCAGACTGGTGAGCTGGACTGGGGTGGTGGGGGTGTGGGGCACCtcctctcagtgctggagaaccaAGAAGAGGTGTGGGAGTTGATGCGACGGCCCGGCCAGCGGTACCGGGGTGAGGGGGGCCGGCAAGCGGCGGCTGAGCGCATCCAAGCCTCCTGGAGGTGCCACCAGGCTCGCACCGCCTACCTGCGTCAACAGAGGCGCAAATGGGCGGCTGAAACCATCGCTATCTCCTGGCTGCTGCACGCCCAGGTGGGACGTGTGAGGAAAAGCCTGCAGGCGACTCGCCTTCGCCAACTGGAGAATTACCGCAGCAGGGCCGAGTATCTGGCAGACAACTGGAAACACCTCAGCACCTCCAGGAGGACCATTATCCATGTACCATCATTAGgatacTCTGAGCAGCAGCGTCGCAGTCTCACAGGATTTGACATACTGCAGAATACCCAGATGGGTCGTCTGTGTGACATTAGAGATGAGAACATAGAGGTGATCTATGTGTGTCCGGTGCGCCTGGGAGAGGACCTTTTACACTACTACACTCAGCTGCTGGGTCTACAGGGGGCTGTGGAGACAGGAGACCTCTCGGCTGTTCCAGCTAGCAGTGCCAAACGTTTCACCATCCTCACACCAGAGGCCTATCAGCACTTTCCTaACCACAATATGTGTGTCTCCacactgctgaagtacagcccACGGACACTGCGCCGCATAAAGGACCTGATCCAGGGCAAACATGCATACATAGTCAGCGGAGTCCCCCACATGGATGACCTGGCCGTGGCTGATGAGTTGGGAGTGCCAGTGCTGGGTCCAGAGCCTGCTGTGGCCCAGCTCTATGGTACCAAATCTGGAGCTAGAAGGATCTTCACTAGTGCTGGGGTCAGCGTGCCACCGGGACACGGTGACATATACACTCTTCAGCAGCTGTATGAGTGTCTAGCACAGCTGATGACAGATCATTTGGAGGTGCAACGCTGGCTGTTTAAGATGGATGGAGAATTTGGCAGCCGTGGCACAGCCTATTGTGATGTTTCTCATCTGAGCTTCCGGTCCTGGGCTCTGCAGAAATATCGGCGTCACGGACCACAGCTTTGGAGGATGGCCTGGGCTCAGGAACCAGTGCTGATCAAATTTCAGGAAGAAGTACCTGCTCTTCTGGCCTCCCATGCTAAGCTGTTCAACACATCGTGCTATCCCAGCTGGATCTCCTTTCTTGAGCACTTTCTTAAAGAAGGTGGCACAGTCGAGGCCTATCCTCCCTCGGACAGTGTAACATGTCTCACTGTGGATCTTCTGGTGGAGCCAGGAGGAGAAGTGCACATGCTGTCATGTGGAGACCAGCTGCATGAACCTGGCTCTATGCAGGTGGTAGGCTGCTCCATGCCTCAAACCTCCATCTGCCAACACACCCTCCACTCTATCTGCATGCGTGTAGGCCAGGCCTGCCATCAGCGCCACATATTGGGCCACTTGTCTCTGGACCTGGTCACCTTCCTGGAGCTTGGTACTCTGGAACAGCAGGTGTGGGCAGTTGATCTGGACATTGGTTACAGTAACCAGTTGGCCATGACCCAGATGATGCTGTTTATGACCAGTGGAACGCTGAACTGCCGCACCGGATGCCTAGAAGTTCCTCCTCTAGTCATCAACAGCAAGGCCTCTGCACGCCACAAAGCACCTAaagctCTCTCAGTGACCTCCCGTTTTGCAGTGATGAGTAGCAAACTGTTTCATACCAACCTGTCTATGGTCCATTACAGTGTGTTCTTCCAGATGTGCAAGGCACACCGCATAGGGTTTGACATCAAGGAAAGACAAGGATCTGTATTTGCTCTCCACGACAGCACAGAAAGAAAAAGCCTCGGCTTAGTAACAATCTCACCAGATCTCAAGGGAGCTTTGCTGACCTTTGCTCACAACCTGTCCAtcattcatcaagaaatatCAGCCCCAAATTTGCAAGGAAAGACCAATTTTAAGAAGCTGATCAAAAATATCGAGGAGGTGGTGGGTGTGACCATCCAGaatgcagaaattgagaaatctGCTTGAAACAGACATTTAGCCTTTTCTCTCTCCATGCTTACAGCACATCTGGTAATACTGTTATATTTCTAGTTATGGTGGTACATCCACCCTAACCATTATAAAAGGACTGTTACAGCTGATGACTACATCTAATACAGATCATTTTACATGATGTGcatggcttttttttaaaataacaccACTGTTAAACTTTGTTTACTTGCATATGTGAGGATGCTGTTGTTTCTACAGCTCATATGTCAGTGGTTTAGGATGTGCTtttctaatattatttttttatgggcTTAACTGCTTAACAggaagagaaaattaaaaacgTATGTATCTGCATCCATCAGTAATGATCTGACATGGAACACAGAAAGAATTGCAGGTACATTTTAAGTATGAAAAGATTAGATTTATCACCTCAGGtattgttaaattattttaaccctttgaCAGTTACAGAGTTGACATTTTTCACTATTTTGTCCACAATAATTAGCACACTGTTGGTGCTTCCTTAACATTTTACAAACAAATTGAGATTAAAAGCTGATATATCTCACTGCCTTCCACACTTTTCCCaccagaggattttttttttctctcattagaACTCTTTGGAACATCGTTGACCTCAAcatctccaaaatagcaacacagtttgtgtgtttaagttATGTTCTAAACTAAACATTAAGTTGGAAACA

Function

NR:

description
IQ motif-containing protein H-like, partial

GO: NA

KEGG:

id description
K24842 IQCH; IQ domain-containing protein H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249149.3 True 4024 mRNA 0.49 22 17458015 17492931

Neighbor

gene id symbol gene type direction distance location
LOC103027004 smad3,LOC108424035,LOC105892538,LOC103353199,LOC107740443 coding upstream 10222 17425218 ~ 17447793 (+)
LOC107197433 NA coding upstream 156333 17295207 ~ 17301682 (+)
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding upstream 526653 16921369 ~ 16931362 (+)
slc24a1 slc24a1,LOC107738725,LOC107596980,LOC107742879,LOC107686291 coding upstream 573860 16859892 ~ 16884155 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding upstream 605556 16842661 ~ 16852459 (+)
c18h15orf61 cunh15orf61,c4h15orf61,LOC103025902,LOC107738714,LOC107583911,LOC107718314,LOC107686305,LOC107596966 coding downstream 862 17493793 ~ 17498771 (+)
LOC103029280 skor1 coding downstream 70944 17563875 ~ 17571917 (+)
LOC103025173 pias1b,LOC108424062,LOC108264782,LOC107596961,LOC107738708 coding downstream 84461 17577392 ~ 17604549 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding downstream 117946 17610877 ~ 17622128 (+)
LOC103024336 NA coding downstream 132123 17625054 ~ 17645249 (+)
G159017 aagab non-coding upstream 1038 17455315 ~ 17456977 (+)
G159014 NA non-coding upstream 6683 17448832 ~ 17451332 (+)
G158991 NA non-coding upstream 174133 17283467 ~ 17283882 (+)
G158882 rpl4 non-coding upstream 280823 17173067 ~ 17177192 (+)
G158891 NA non-coding upstream 299564 17157142 ~ 17158451 (+)
G159028 NA non-coding downstream 103128 17596059 ~ 17599354 (+)
G159115 NA non-coding downstream 377076 17870007 ~ 17870468 (+)
G159120 kif23,LOC107686310 non-coding downstream 434057 17926988 ~ 17938088 (+)
G159122 NA non-coding downstream 449385 17942316 ~ 17946683 (+)
G159129 NA non-coding downstream 502767 17995698 ~ 17996728 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 85809 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 268764 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 285787 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 659615 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 732806 16654136 ~ 16725209 (+)
rapsn rapsn other downstream 478165 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 1032597 18525528 ~ 18576437 (+)
G159666 NA other downstream 2692585 20185516 ~ 20186919 (+)
G159728 NA other downstream 3243667 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 3516371 21009302 ~ 21011794 (+)

Expression


Co-expression Network