hacd3 (hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880)


Basic Information

Item Value
gene id hacd3
gene name hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16842661 ~ 16852459 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249163.3
GGCGGCGCAGACACGCGCGCACTCGCTTCACCGAATATTCTGGTGCTCGCGCTGTCTTCCGGCAGGGCGCTCGGTATGTATCGGCGCTCTTCATCCTTCATTCCCGAGCTGTAGAGGAGACGGTAGCACTCGCCCGCGAATCCCCGCCATGCAGACCCTCACCCCGCACGTGTTCTGGGCTCAGCGGCACGGAGATATCTACCTGCGGGTGGAGATCAGCGACGCCAAGAACCTGGACATTAGTGTTCAAGAGAACGTCCTCCGCTTCAGAGGCCAGGGTCATGGAGCCAAGGGAGAAAATGAATATGAGTTCAGCTTGGAGTTCCTTAAACCAGTGAAACCTGAGgtaaaacaCAAGTCCACCCAGAGGCAGGTGAACATCGCCGTAAGAAAGCAGGGGCATTGCTGGTGGGATCGTCTCACTAAGCAGGAGAAGAAGCCTGTGTTTCTGGCCCCTGACTTCGACCGCTGGCTGGATGAATCTGATGCTGAGATGGAGCTGAAAGAAAAGgaagagaaaataaataaagtgtcgGTGGAGTCGAGGATTCGAAAGGACCCTTTTCTAGGCCTGAAGAAGGGATATCTCTTCATGTACAACCTGGTCCAGTTTCTGGGGTTCTCTTGGATCTTTGTGAACATGACTGTGCGGCTTTTCATACTTGGGCAGGATTCCTTCTATGACACATTTCACACTATTGCCGATGTGATGTACTTCTGCCAGATGCTGGCAATTATTGAGGTTATTAACCCTGCACTGGGCTTGGTTAAGTCTGGGGTGATTCCTGCCTTTATACAGgtGATGGGGAGGAATGTTATCCTTTTTGTCATCTTTGGTAGCTTAGAGGAGATGCAGAACAAACCAGTTGTCTTTTTTGTCTTCTATCTGTGGAGTGCCATTGAGATATTCAGATACCCCTTCTACATGCTGGCCTGTATTGATACTGAATGGAAGATGCTAACCTGGCTCCGGTACACAATTTGGATGCCGCTGTACCCACTGGGTGTTTTGGCAGAAGCTGTGTCTGTCATCCAGTCCATCCCCATCTTTGATGAGACTAAATTCTTAAGCATTCCCCTGCCGGCAGCCCTGGGCTCCAGCATCAGCTTCTCTTACATCTTGCGGTTTTACCTGCTGATTATGTTCCTGGGACTCTTCTTCAACTTCCGCTACCTCTTCAAGCAGAGGAGGAAACGATTCCGCACCAAGAAGAGGAAACCCAACTAAAGACACCCTCAGGAGAAATATATACTTCATATTCAGCCCCCTGCCTTTACCACCATGTCCTGCAGTGTCTATCCTCACTTCCGTCCTCATTCTACCTTCCTTCCTCCACTCTGTTAGAGAAGTTATTCTACAAACAGACATCCGACCCTCCTCTAACTCTAAgtgcatttactgtattatttctGTATTGAATAGCCAATCTCTACTATACCTTACGTTAAAGGATCACGTAAATTAATTTGATATGACAAACTTgaaagtatttatatatttatggaaGTGTCATTCCTGATTAAGCTGGGCATTGAGGTAGAACAGCAGAACATACAAAGATTACTTAGCATTTCAACTTTACAATCTTTCCCTGGGACATGTTTAAATTTGATCATTTCTACTGACCACACCAGACAACCTAGAAAGGAGACCATGAACCTCAGGGACAGTTACGTTTTCAAAGTATAGCAGTATAAGTCCAGAGGATTGGTGATGTTCTGCTATGTTCTACTGAAAACAGACATGCGGTACGTGATACGGACAACTGTTTCAAATAAAGATTTCAAAAGTAA

Function

symbol description
hacd3 Predicted to enable 3-hydroxyacyl-CoA dehydratase activity. Predicted to be involved in fatty acid elongation; sphingolipid biosynthetic process; and very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in neurons; peripheral nervous system; trigeminal placode; and vasculature. Orthologous to human HACD3 (3-hydroxyacyl-CoA dehydratase 3).

NR:

description
tyrosine phosphatase-like protein ptplad1

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016829 lyase activity molecular_function

KEGG:

id description
K10703 HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249163.3 True 1794 mRNA 0.47 11 16842661 16852459

Neighbor

gene id symbol gene type direction distance location
pllp pllp coding upstream 69661 16764032 ~ 16773000 (+)
trnal-cag_11 NA coding upstream 79053 16763526 ~ 16763608 (+)
n4bp1 NA coding upstream 312066 16512334 ~ 16530595 (+)
LOC107197482 LOC102776007 coding upstream 331352 16506896 ~ 16511309 (+)
cbln1 cbln1,LOC107549644,LOC107583779 coding upstream 557617 16274679 ~ 16285044 (+)
slc24a1 slc24a1,LOC107738725,LOC107596980,LOC107742879,LOC107686291 coding downstream 7433 16859892 ~ 16884155 (+)
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding downstream 68910 16921369 ~ 16931362 (+)
LOC107197433 NA coding downstream 442748 17295207 ~ 17301682 (+)
LOC103027004 smad3,LOC108424035,LOC105892538,LOC103353199,LOC107740443 coding downstream 572759 17425218 ~ 17447793 (+)
iqch NA coding downstream 605556 17458015 ~ 17492931 (+)
G158852 ppcdc,LOC107738727,LOC107686355,LOC107583771 non-coding upstream 2304 16836713 ~ 16840357 (+)
LOC111194771 NA non-coding upstream 21570 16817235 ~ 16821091 (+)
G158837 arl2bp,LOC107549653,LOC107686354,LOC107672193 non-coding upstream 65443 16774680 ~ 16777218 (+)
G158818 NA non-coding upstream 103784 16738472 ~ 16738877 (+)
G158823 aars non-coding upstream 112546 16728456 ~ 16730115 (+)
G158855 NA non-coding downstream 28059 16880518 ~ 16880840 (+)
G158873 NA non-coding downstream 87069 16939528 ~ 16939732 (+)
G158874 megf11 non-coding downstream 96005 16948464 ~ 16948756 (+)
G158875 NA non-coding downstream 136311 16988770 ~ 16989051 (+)
G158876 NA non-coding downstream 142658 16995117 ~ 16995418 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 44261 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 117452 16654136 ~ 16725209 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other upstream 271203 16542878 ~ 16571458 (+)
G158779 NA other upstream 462838 16379259 ~ 16379823 (+)
LOC103041352 NA other upstream 1066495 15775424 ~ 15776166 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 249153 17101612 ~ 17172228 (+)
zwilch zwilch other downstream 325216 17177675 ~ 17189251 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other downstream 474641 17327100 ~ 17372206 (+)
rapsn rapsn other downstream 1118637 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 1673069 18525528 ~ 18576437 (+)

Expression


Co-expression Network