pllp (pllp)



Basic Information


Item Value
gene id pllp
gene name pllp
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16764032 ~ 16773000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007249169.3
TCATGTGAGGAAGTTATTTATTACCTCAGATGAGCCCTGCCTACATGGACAAACATCATGTATGAAGAAGTAGGACTGgctaatgagagagagagagattgagagagagaggtatcaTACTGCAGCTGTCTGTTTGGATAGAGTTACTAGGCAGTGCTCACACCTGCATTGGCTAGAGCTGTGTGTCTTCACCTGGTTCTTCACCTTTTTAACTCAaaggattttttcttttgcacaaCTTCTGTGTGTTGGGAATAGAAATGGCAGATTTTCCTGGGAAGGTAAACACTGAGACAAGCTCACCCCAGGCTCAAGCAGCATCATGGCAACTAATGAATGTATCTATGAACTTGAACTTCATCAAGACCATTCCTGGGATCCTCTTAATTGCAGAGATTGTTGTAGGCTTGTTGGTATGGGCCCTTATCGCTAGTGTTGTCTACCAGGCGGTCCCTGCCTATGGGTGGGTGATGTTTGTGAGTGTGACGCTGTGGATTCTCTCTATCGTTCTGTTCATCATGCTGTTTCTGAACTTGCAGCAGAAATTAACATCTGTGCCCTGGCCTTTAGTGCTGTTGGTGTTTTACGGTGTAGCGACCATCCTGTATCTCACTGCCTTTATTGCCAATGCTGCTTCAGTCACTCAATATAGATATCTTCCTTACCACTATAATCATATGGCAGCTGCTGCGttttttggCATTGTGGTGACATTAATTTATGGAGCAAGCACCTTCTTTGCATACCTGGAATGGAAGGGTGACGGAGGAAATGCAGCCACTAGCACAGTGCCTGTGTAGCAAGGTGTTATCTTCCTTCACCAGAGACTGTATTCTTTGTGTTAAAAAAGTGACCTGAAGAGGAGTTGGATAACACACTGACACGTTTTGCTCAAGCCTTTGTTCAGCATTATTTGAGACAGGCTGAGCATGGGTATGATTtgaatgtgtaaatgtatggACTGCAGATTTTATGATGTGTTGTTCTATCATGCTATGCACCTCTGTGGTTTACTTACTTTGTATACAGGCCAGGGAAATAATACATGCTGAAAATTCTGAACTGTTGAATTGCTAAACTGttgattatatatgtatttaaacagtgaacctaaaaaaaatgaagcttgatgacattttttgtatgtcaattaaattacatttatttacgcTTACCTTTTTATACAGGTCATATTTACACAGACATCAAAAATCTAATACAAACAAATAGGAAGTACACACTAAATCCAGAGAGGTGGTAGAACATTTGAACCACAGAAAACATCAGCAAAATGGAGCAATTGACTGAAGGGGAGCAGTCCTCCCACTCAGTCCCTGACACATTATACTGTGGCAGAAGTTTGAACACCCTGGCAAAAATTCTGTTACTGTAAAAGTTACATGGGTAGTGATGAACTGATCTCAAAAAGGCATAAAGACTAATAATTCTCAACATTTTCAATGTATATTTTACAACAGGactgtgttcttttttatataatatagggAATATTGGGAGCATTTTAGAGCACATTTCAAAGCTTTATATTACATACCCTGACCCCTCAAACCTGCTCGCAACAAACAGAAGCAATTGACTCCTTTAAGCAGCTACGTAGCAATCTTAAAAGAATTCCACAAAGCAGGAAATGACTGAGAAGAAAGCTAAACTTCTGTAAGTAAACATTTCCACAATTTgtagtgtaataaaaaaaagcctgaaGGAAATAAGCACTTGAATGATTACTAATTTAACTACAAAATACCTTCatgaagatttaaaaaatgtggcgGTTTACTGTTCTATTGTGTAGTGACCTTCAACCTTTATAGTAGAACCATTAGAAGATCACTATTTATTGTACCCACAAAATTTGTTTCGGAAATGATCAAAAAGAACATCCAAACAGGCTTGAGGCACTTTAAAAGGTGCATGCAAGAAAAAAATCCTACAGAGCACAGACTGAATGCTACTACAGAAGCATTTAGAAGCTATGATACACTCAACTGAGGGTGTTACAAAGTTTTCATCAGGCTTTTTTTTTCGCAAATGTAAAGCTGGAAATCAAATGAATCTtgcttaaaatttttaaatatatgtgtattatTA

Function


symbol description
pllp Predicted to be a structural constituent of myelin sheath. Acts upstream of or within digestive tract morphogenesis and regulation of endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in hatching gland; mid intestine; and pronephric duct. Orthologous to human PLLP (plasmolipin).

NR:

description
PREDICTED: plasmolipin

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007249169.3 True 2109 mRNA 0.38 4 16764032 16773000

Neighbor


gene id symbol gene type direction distance location
trnal-cag_11 NA coding upstream 424 16763526 ~ 16763608 (+)
n4bp1 NA coding upstream 233437 16512334 ~ 16530595 (+)
LOC107197482 LOC102776007 coding upstream 252723 16506896 ~ 16511309 (+)
cbln1 cbln1,LOC107549644,LOC107583779 coding upstream 478988 16274679 ~ 16285044 (+)
LOC111194834 NA coding upstream 527069 16236180 ~ 16236963 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding downstream 69661 16842661 ~ 16852459 (+)
slc24a1 slc24a1,LOC107738725,LOC107596980,LOC107742879,LOC107686291 coding downstream 86892 16859892 ~ 16884155 (+)
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding downstream 148369 16921369 ~ 16931362 (+)
LOC107197433 NA coding downstream 522207 17295207 ~ 17301682 (+)
LOC103027004 smad3,LOC108424035,LOC105892538,LOC103353199,LOC107740443 coding downstream 652218 17425218 ~ 17447793 (+)
G158818 NA non-coding upstream 25155 16738472 ~ 16738877 (+)
G158823 aars non-coding upstream 33917 16728456 ~ 16730115 (+)
G158793 NA non-coding upstream 175560 16587927 ~ 16588472 (+)
G158786 lonp2 non-coding upstream 188658 16574684 ~ 16575374 (+)
G158776 NA non-coding upstream 473025 16290776 ~ 16291007 (+)
G158837 arl2bp,LOC107549653,LOC107686354,LOC107672193 non-coding downstream 1680 16774680 ~ 16777218 (+)
LOC111194771 NA non-coding downstream 44235 16817235 ~ 16821091 (+)
G158852 ppcdc,LOC107738727,LOC107686355,LOC107583771 non-coding downstream 63713 16836713 ~ 16840357 (+)
G158855 NA non-coding downstream 107518 16880518 ~ 16880840 (+)
G158873 NA non-coding downstream 166528 16939528 ~ 16939732 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 38823 16654136 ~ 16725209 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other upstream 192574 16542878 ~ 16571458 (+)
G158779 NA other upstream 384209 16379259 ~ 16379823 (+)
LOC103041352 NA other upstream 987866 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 992087 15771295 ~ 15771945 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 6506 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 328612 17101612 ~ 17172228 (+)
zwilch zwilch other downstream 404675 17177675 ~ 17189251 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other downstream 554100 17327100 ~ 17372206 (+)
rapsn rapsn other downstream 1198096 17971096 ~ 17985904 (+)

Expression



Co-expression Network