cbln1 (cbln1,LOC107549644,LOC107583779)


Basic Information

Item Value
gene id cbln1
gene name cbln1,LOC107549644,LOC107583779
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16274679 ~ 16285044 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249185.3
CCTCTAATATCTCACATATCAATAATTGAGCGCGCGAGCAGGGTAGAGAGCCCGCGCTATGCGTTCAGGCGCGCGCCGACTACACGAGGGCCTCGCGACGGAGTGAGGGAAAAAGCGGAGAAAGAAGGTGGGAGATAAAAGAAAGTGGAATCTGAGGATTTAGTGAGAAAAATACCAGGAAAAGGCTCGAgacatatatttaaagaaatataaataaactttttggaCGTCCAGAAACGGGAGGAGTTCATTTCCACCGAGGAAAGAAAAACGGGAAAAGCAAACAGAGGAAACAAAAAAGCGCGTGAGGTCTGTTGACGTGTCGCGCGCACAGGTGAAGAAGTGAGTTGACAGCAGAGCGGCTCTCGCGCTGTGGAGAGACCCCGGGGGCGGTGATGTTAACCGTGCTGCTGGGCGCCCTGTGGCTGGCGAGTCTCGCGAGTGCGCAGAACGAGACGGAGCCTGTGGTCCTGGAGGGAAAATGCCTGGTGGTCTGCGACTCCAACCCCACCTCGGACCCCACGGGCACCGCGCTGGGAATCTCTGTGCGCTCCGGCAGCGCCAAAGTGGCCTTCTCCGTAGTGAGAAACACCAATCACGAGCCGTCAGAGATGAGCAACCGCACCATGGTCATCTACTTTGACCAGGTTCTGGTGAACGTTGGAAGGAGTTTCGATGAGGAAAGGAGCAATTTCTTCGCGCCGCGCAAAGGGATTTACAGCTTTAATTTCCACGTCGTGAAGGTGTACAATCGCCAAACCATCCAGgtgagTCTCATGCACAACGGGTGGCCGGTGATTTCGGCTTTCGCCGGGGATCAGGATGTGACGCGCGAGGCTGCCAGCAATGGCGTTCTGATCCAAATGGAGAAAGGCGACCGCGCCTACCTCAAGCTGGAGCGGGGCAACCTGATGGGCGGCTGGAAATACTCCACCTTCTCCGGCTTCCTTGTCTTCCCCCTGTAGAGGAGGGACTCGCCATAGAAGGACTATTGCTCTTCAGCTCGCTGGCCTGGGGGACtgtggagatagagagagtgagagaaagagagagcgagagaaagaaagagagagagagtgaatgtgaaaaagagaaagggagatgaTTTAAAAAGAGAATTAGTGTGGCAGGCTCTCCAACACACTCGCTCGCTCTGCTGCTTGATTACAGCTCTGGACagccaaaacttttttttataaccctTACAAATACGATAATTAACAATTAACAACAAAACTACAGAGGCCATCCCCCATCCACATGTATCATCACACCCACACCTTCATCTGCTTTATGGAATGTCCATCATTCAAGACCCAACAACCACACGCTCCATCTATCCCTCGACCACCCACCTCCATCAACTTACACTGACACGCTCCTCGAGTTAGTCTCACCTCTCACCACGTGTACATTCTTAAGCGCTATTCGCGCACTTTTACCTTCAGTTCTGATGGGTAACCTCGCTCACTCTGTTGCGTCTCTGCTCCTCTCCGGCCTGTCGTCTCCTCTCGTTGGGGGGGACGATCCCTTGCTCTTTCATGAGATTTGGAGAATCTCTGATCTTCTCAAACTCCTCAAAGAGACTCTTGCTGTATActggataaatatatatatatagatatataaaaaatcctTCAAATTTCTATATGATATACTCTATGACTAACTGAATCTGGTTGACTATCTGTATTTCCGTATTTCAGTGTTAATACttagtgattgtgtgtgtgtggatcatGAAGCTGCCGTCCAGCTACCGAtgcttcttgtttttgttttttggtcgaaaaaaaaaaaaatgtggctaCACTGAACCTATATCAGAATTACTATAAAGGAATTTTATTATCATTGACTGTAAGATATATGTGAATATTAAGCAGGCAAAACTCCTCCCTTTTATTCATCAATCAGTTGATTTAATGATTGTTTTATAATTTGCTTTGATCCAATAAAACTTAAatggtcatttttatttttcttaatctgA

Function

symbol description
cbln1 Orthologous to human CBLN1 (cerebellin 1 precursor).

NR:

description
cerebellin-1-like

GO: NA

KEGG:

id description
K24235 CBLN; cerebellin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249185.3 True 1993 mRNA 0.47 3 16274679 16285044

Neighbor

gene id symbol gene type direction distance location
LOC111194834 NA coding upstream 37716 16236180 ~ 16236963 (+)
LOC103038143 NA coding upstream 306589 15960149 ~ 15968090 (+)
rspry1 rspry1,LOC107583786,LOC107672266 coding upstream 315273 15947586 ~ 15959406 (+)
cpne2 cpne2,LOC107583787,LOC107740309 coding upstream 342213 15878898 ~ 15932466 (+)
nlrc5 NA coding upstream 399444 15851856 ~ 15875235 (+)
LOC107197482 LOC102776007 coding downstream 221852 16506896 ~ 16511309 (+)
n4bp1 NA coding downstream 227290 16512334 ~ 16530595 (+)
trnal-cag_11 NA coding downstream 478482 16763526 ~ 16763608 (+)
pllp pllp coding downstream 478988 16764032 ~ 16773000 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107672296,LOC107596982,LOC107583769,LOC107742880 coding downstream 557617 16842661 ~ 16852459 (+)
LOC111194770 NA non-coding upstream 287931 15969286 ~ 15986748 (+)
G158652 NA non-coding upstream 295310 15979026 ~ 15979369 (+)
G158651 NA non-coding upstream 295733 15976852 ~ 15978946 (+)
G158644 fam192a non-coding upstream 332417 15936078 ~ 15942262 (+)
G158641 NA non-coding upstream 365388 15909003 ~ 15909291 (+)
G158776 NA non-coding downstream 5732 16290776 ~ 16291007 (+)
G158786 lonp2 non-coding downstream 289640 16574684 ~ 16575374 (+)
G158793 NA non-coding downstream 302883 16587927 ~ 16588472 (+)
G158823 aars non-coding downstream 443412 16728456 ~ 16730115 (+)
G158818 NA non-coding downstream 453428 16738472 ~ 16738877 (+)
LOC103041352 NA other upstream 498513 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 502734 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 506018 15768055 ~ 15768661 (+)
c18h11orf16 NA other upstream 959127 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 1137409 15128368 ~ 15137270 (+)
G158779 NA other downstream 94215 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 257834 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 369092 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 494462 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 816568 17101612 ~ 17172228 (+)

Expression


Co-expression Network