LOC103038143


Basic Information

Item Value
gene id LOC103038143
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15960149 ~ 15968090 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249189.3
ttaataGTTAATGGGGGTGTTAAGTTTGTTAGAATTTGGACATGAGTCAGTAGAGTAAATTAAACATTCAAACACGTAGGGGACCTTTAGGGTAAATACAACTtcgaaaaaatctgaaatatgaAGTGTTTGTTGGGTGACAGGAGTGAAGATGCGGCAGGTGGCGCTATTCGCTCCTAAGATATTTCTGAGGAGGGAGAACCATCCGCTGGGTAGCTAAAGATTAGTGAACAAGGTGAGGAACCTGCAGATATACGGTGAATTTAATTACGCTGTAATTAAACGTTGAATTCAGGAGCAATAGGCATCGGCTTTTTTTTGGAATACAGCGCTGCCCGGGTGTCTCCATGTCGTCGTGGGCGCAGGGCTCTGGAGGCAGGCGGCCTCAGACCAGCCCGAGCGGCGGTGGATTGCAACCGCTTCGATCTTACCGAAGACAGCCGTACCCTACCAGAGAGGAAAGACTAGATGCACACCATGAATCAGTTAGCTATGAAAATGTGGAACAGCAGGATGATTATTCTGGAACTGCAAACTACGAAACATATGAACATTCAGCACATCAGCCACACCAGACTCATAAGCCCAAAGTTCCCTCATCATCTGGAGATGGTGAGCACACTGCTCTGTACCAGAGACTATATGATCAGTTTCATGGAGATGGGGCCAAGAAGCCTGCTGACTGTGTTGTTCTTTCTGTGAAGACCCAGAATATGGATTACCCAAAATCGTTAGGACACTGTTTGCAGGAGCGTGGCCTCTCGGTGGAAATGCTTTACCTGCAGACGGAGTCAGGCCTAACCCGAGCCCTCCAAGATGTCCGTTCCGACGGTTCCCCCTTATGTATTCTCGTCGAGCAGACTAATGTAACTCTGTCCTCGTGCACTGTAATCATATTTTCAGAGTCCCTCAAAATTCACCGCAACATGCCCAAGGACCAAGCCCTGGAGTTTGTAATGGTGGAGTTTCGACGTCTTGGTGGTGGCCGACGACAGCACGAGTCCGCTGATGCCGCAGCACGAACAACTGAGCTGACTGATGACTACCTGGAGCGGGCCAAGCTGGAGCACCACTTCATGCCTTCCACCACACGCCATCTGCTCTTTCTCATGGCAGAGGGCCTGCACCTCTATTCGGAGGAGCTGGCAACCATCGCAGAGTATGTACAAAACCACCAGAAACGTCTGCAAGCATTAGCCAATGaatcagaaaataaagtcaCACCAGAGACGCTGACCAGTCTTCCTGCTGGTTTGGGGAATCCTCCACCCCTGCTACCAACTCCTATCAGCCAGAGCCAACCACAAAGCGAGCACTCAGCCATGCCCTCAGGAATGGGAGAGCCAGCTCATGACTCATATCTGAAGACCAAGCCTCCTCCTCTACTGTCAATGGATGTTCTTCAGGGATCTCCGCACAGGCCATCTGCTTCTCATGGCCATGGTACGCCTCATAGCTCTGGCACCACACATGGCCCTCCATCTTCTTTTACTCCACAGCTATCAAGAGGTCCACTAGGTCCTAGAGGTCCTCCACTTCCACGAGGACCACCAGGCCTCCGTAGTCTACTAGGTCAGAGAGAATCTCCAGCTCCTCATGGTCCACACCCCCACCAAGGCCTGCCAGGGCCTCATGGTCCGCCTGCTACACATGGGTCTTCTGACCATGAACCACATGATTTCCATTCACCTCGGGGTCCCTTACTTGGTCATGGACCCCCTCCATCACATGGACCTCCACTACTCCGTGGGCCACCATCCCAGAACGGCCCCAGTGGTCCTCGTGGACCACCTCCTCAACGTGGTCCCAGAGCACCACCACCTGCACTCAGGAGCCTTCACATGGGGAATCAAACAGgacCAGCACCACGCCCTTTGCGACGCCTGCTTCCCTGACCCACTTAGGACTGAAATGGCTTCAGCTAGTGCAGAAACTTAGGAAGACCTTGTGTTCTTGATGTTACTTGACAgtgtttcttttgtattttatgtttttggtttCAGATTTGTAAATtgcattttatactttttttctttcagtctcCTTTTTGTGTCCCTTGAAAGAACTGATGCCAcgttttattaaacgtgagttgttttgtttcagatctttgtgtttttgttaatttCCGAACTGTACGTTTCATTCACAACTAAGACTTTAGTTAGTGTAGGTAAAGCCTGTTTCATTATCCAATCAAAGAGATTTATGCTGATAAGGCCACTGTGTGGGCAGAGAACTGACACACACTGCTAGTCTTTTAGTTGTTTCCTTCACTGTTTGGGGAGAACATTTAATAggcttaaaaaaagaagatcGGAAACTAGAGAATTTCCTAAGGGAAACACATAACGGTTGTAcctatagactgtatataatgaAGCCAGAATATGGCAGAAATGGGagaatttcattttttattaacaatccataactgcatttttgtttaaatattcaaaatgaATGTTCATCAAAGAAAGATGGGAAGGGATctaagtatttttctttttatagtgCATATTATAAAACTATTACCTTTTCCCCCCCTAAAAGCTATTTGTTTGGCATTTCTGTTCCCATCACCCAATCCATTAAAGACCtccagtaatattgtataa
>XM_007249190.3
ttaataGTTAATGGGGGTGTTAAGTTTGTTAGAATTTGGACATGAGTCAGTAGAGTAAATTAAACATTCAAACACGTAGGGGACCTTTAGGGTAAATACAACTtcgaaaaaatctgaaatatgaAGTGTTTGTTGGGTGACAGGAGTGAAGATGCGGCAGGTGGCGCTATTCGCTCCTAAGATATTTCTGAGGAGGGAGAACCATCCGCTGGGTAGCTAAAGATTAGTGAACAAGCGCTGCCCGGGTGTCTCCATGTCGTCGTGGGCGCAGGGCTCTGGAGGCAGGCGGCCTCAGACCAGCCCGAGCGGCGGTGGATTGCAACCGCTTCGATCTTACCGAAGACAGCCGTACCCTACCAGAGAGGAAAGACTAGATGCACACCATGAATCAGTTAGCTATGAAAATGTGGAACAGCAGGATGATTATTCTGGAACTGCAAACTACGAAACATATGAACATTCAGCACATCAGCCACACCAGACTCATAAGCCCAAAGTTCCCTCATCATCTGGAGATGGTGAGCACACTGCTCTGTACCAGAGACTATATGATCAGTTTCATGGAGATGGGGCCAAGAAGCCTGCTGACTGTGTTGTTCTTTCTGTGAAGACCCAGAATATGGATTACCCAAAATCGTTAGGACACTGTTTGCAGGAGCGTGGCCTCTCGGTGGAAATGCTTTACCTGCAGACGGAGTCAGGCCTAACCCGAGCCCTCCAAGATGTCCGTTCCGACGGTTCCCCCTTATGTATTCTCGTCGAGCAGACTAATGTAACTCTGTCCTCGTGCACTGTAATCATATTTTCAGAGTCCCTCAAAATTCACCGCAACATGCCCAAGGACCAAGCCCTGGAGTTTGTAATGGTGGAGTTTCGACGTCTTGGTGGTGGCCGACGACAGCACGAGTCCGCTGATGCCGCAGCACGAACAACTGAGCTGACTGATGACTACCTGGAGCGGGCCAAGCTGGAGCACCACTTCATGCCTTCCACCACACGCCATCTGCTCTTTCTCATGGCAGAGGGCCTGCACCTCTATTCGGAGGAGCTGGCAACCATCGCAGAGTATGTACAAAACCACCAGAAACGTCTGCAAGCATTAGCCAATGaatcagaaaataaagtcaCACCAGAGACGCTGACCAGTCTTCCTGCTGGTTTGGGGAATCCTCCACCCCTGCTACCAACTCCTATCAGCCAGAGCCAACCACAAAGCGAGCACTCAGCCATGCCCTCAGGAATGGGAGAGCCAGCTCATGACTCATATCTGAAGACCAAGCCTCCTCCTCTACTGTCAATGGATGTTCTTCAGGGATCTCCGCACAGGCCATCTGCTTCTCATGGCCATGGTACGCCTCATAGCTCTGGCACCACACATGGCCCTCCATCTTCTTTTACTCCACAGCTATCAAGAGGTCCACTAGGTCCTAGAGGTCCTCCACTTCCACGAGGACCACCAGGCCTCCGTAGTCTACTAGGTCAGAGAGAATCTCCAGCTCCTCATGGTCCACACCCCCACCAAGGCCTGCCAGGGCCTCATGGTCCGCCTGCTACACATGGGTCTTCTGACCATGAACCACATGATTTCCATTCACCTCGGGGTCCCTTACTTGGTCATGGACCCCCTCCATCACATGGACCTCCACTACTCCGTGGGCCACCATCCCAGAACGGCCCCAGTGGTCCTCGTGGACCACCTCCTCAACGTGGTCCCAGAGCACCACCACCTGCACTCAGGAGCCTTCACATGGGGAATCAAACAGgacCAGCACCACGCCCTTTGCGACGCCTGCTTCCCTGACCCACTTAGGACTGAAATGGCTTCAGCTAGTGCAGAAACTTAGGAAGACCTTGTGTTCTTGATGTTACTTGACAgtgtttcttttgtattttatgtttttggtttCAGATTTGTAAATtgcattttatactttttttctttcagtctcCTTTTTGTGTCCCTTGAAAGAACTGATGCCAcgttttattaaacgtgagttgttttgtttcagatctttgtgtttttgttaatttCCGAACTGTACGTTTCATTCACAACTAAGACTTTAGTTAGTGTAGGTAAAGCCTGTTTCATTATCCAATCAAAGAGATTTATGCTGATAAGGCCACTGTGTGGGCAGAGAACTGACACACACTGCTAGTCTTTTAGTTGTTTCCTTCACTGTTTGGGGAGAACATTTAATAggcttaaaaaaagaagatcGGAAACTAGAGAATTTCCTAAGGGAAACACATAACGGTTGTAcctatagactgtatataatgaAGCCAGAATATGGCAGAAATGGGagaatttcattttttattaacaatccataactgcatttttgtttaaatattcaaaatgaATGTTCATCAAAGAAAGATGGGAAGGGATctaagtatttttctttttatagtgCATATTATAAAACTATTACCTTTTCCCCCCCTAAAAGCTATTTGTTTGGCATTTCTGTTCCCATCACCCAATCCATTAAAGACCtccagtaatattgtataa
>XM_022679660.1
AGtagcttttttatatatatactggaacctagctaacctaggttatATGATTCACTGATGTAGCTAAATGCTTACTGAATTATAAAGTGAGTTAAGCTAGTTTAGTTTAGTCGCAAAATCTTTAGAACAGatgctagcgttagcttgtaTTTGTTATGGTAAACACTACACGCTAGTTtgttagatagattagatatcTTAGATAAAGGGTTCAGTGAGGTCTAGCTACGACTGCACGGTTTAAACAGCGCTGCCCGGGTGTCTCCATGTCGTCGTGGGCGCAGGGCTCTGGAGGCAGGCGGCCTCAGACCAGCCCGAGCGGCGGTGGATTGCAACCGCTTCGATCTTACCGAAGACAGCCGTACCCTACCAGAGAGGAAAGACTAGATGCACACCATGAATCAGTTAGCTATGAAAATGTGGAACAGCAGGATGATTATTCTGGAACTGCAAACTACGAAACATATGAACATTCAGCACATCAGCCACACCAGACTCATAAGCCCAAAGTTCCCTCATCATCTGGAGATGGTGAGCACACTGCTCTGTACCAGAGACTATATGATCAGTTTCATGGAGATGGGGCCAAGAAGCCTGCTGACTGTGTTGTTCTTTCTGTGAAGACCCAGAATATGGATTACCCAAAATCGTTAGGACACTGTTTGCAGGAGCGTGGCCTCTCGGTGGAAATGCTTTACCTGCAGACGGAGTCAGGCCTAACCCGAGCCCTCCAAGATGTCCGTTCCGACGGTTCCCCCTTATGTATTCTCGTCGAGCAGACTAATGTAACTCTGTCCTCGTGCACTGTAATCATATTTTCAGAGTCCCTCAAAATTCACCGCAACATGCCCAAGGACCAAGCCCTGGAGTTTGTAATGGTGGAGTTTCGACGTCTTGGTGGTGGCCGACGACAGCACGAGTCCGCTGATGCCGCAGCACGAACAACTGAGCTGACTGATGACTACCTGGAGCGGGCCAAGCTGGAGCACCACTTCATGCCTTCCACCACACGCCATCTGCTCTTTCTCATGGCAGAGGGCCTGCACCTCTATTCGGAGGAGCTGGCAACCATCGCAGAGTATGTACAAAACCACCAGAAACGTCTGCAAGCATTAGCCAATGaatcagaaaataaagtcaCACCAGAGACGCTGACCAGTCTTCCTGCTGGTTTGGGGAATCCTCCACCCCTGCTACCAACTCCTATCAGCCAGAGCCAACCACAAAGCGAGCACTCAGCCATGCCCTCAGGAATGGGAGAGCCAGCTCATGACTCATATCTGAAGACCAAGCCTCCTCCTCTACTGTCAATGGATGTTCTTCAGGGATCTCCGCACAGGCCATCTGCTTCTCATGGCCATGGTACGCCTCATAGCTCTGGCACCACACATGGCCCTCCATCTTCTTTTACTCCACAGCTATCAAGAGGTCCACTAGGTCCTAGAGGTCCTCCACTTCCACGAGGACCACCAGGCCTCCGTAGTCTACTAGGTCAGAGAGAATCTCCAGCTCCTCATGGTCCACACCCCCACCAAGGCCTGCCAGGGCCTCATGGTCCGCCTGCTACACATGGGTCTTCTGACCATGAACCACATGATTTCCATTCACCTCGGGGTCCCTTACTTGGTCATGGACCCCCTCCATCACATGGACCTCCACTACTCCGTGGGCCACCATCCCAGAACGGCCCCAGTGGTCCTCGTGGACCACCTCCTCAACGTGGTCCCAGAGCACCACCACCTGCACTCAGGAGCCTTCACATGGGGAATCAAACAGgacCAGCACCACGCCCTTTGCGACGCCTGCTTCCCTGACCCACTTAGGACTGAAATGGCTTCAGCTAGTGCAGAAACTTAGGAAGACCTTGTGTTCTTGATGTTACTTGACAgtgtttcttttgtattttatgtttttggtttCAGATTTGTAAATtgcattttatactttttttctttcagtctcCTTTTTGTGTCCCTTGAAAGAACTGATGCCAcgttttattaaacgtgagttgttttgtttcagatctttgtgtttttgttaatttCCGAACTGTACGTTTCATTCACAACTAAGACTTTAGTTAGTGTAGGTAAAGCCTGTTTCATTATCCAATCAAAGAGATTTATGCTGATAAGGCCACTGTGTGGGCAGAGAACTGACACACACTGCTAGTCTTTTAGTTGTTTCCTTCACTGTTTGGGGAGAACATTTAATAggcttaaaaaaagaagatcGGAAACTAGAGAATTTCCTAAGGGAAACACATAACGGTTGTAcctatagactgtatataatgaAGCCAGAATATGGCAGAAATGGGagaatttcattttttattaacaatccataactgcatttttgtttaaatattcaaaatgaATGTTCATCAAAGAAAGATGGGAAGGGATctaagtatttttctttttatagtgCATATTATAAAACTATTACCTTTTCCCCCCCTAAAAGCTATTTGTTTGGCATTTCTGTTCCCATCACCCAATCCATTAAAGACCtccagtaatattgtataa

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249189.3 True 2618 mRNA 0.47 10 15960149 15968090
XM_007249190.3 False 2524 mRNA 0.47 10 15960149 15968090
XM_022679660.1 False 2537 mRNA 0.47 10 15960598 15968090

Neighbor

gene id symbol gene type direction distance location
rspry1 rspry1,LOC107583786,LOC107672266 coding upstream 743 15947586 ~ 15959406 (+)
cpne2 cpne2,LOC107583787,LOC107740309 coding upstream 27683 15878898 ~ 15932466 (+)
nlrc5 NA coding upstream 84914 15851856 ~ 15875235 (+)
cetp cetp coding upstream 113459 15833153 ~ 15846690 (+)
herpud1 NA coding upstream 127109 15823719 ~ 15833040 (+)
LOC111194834 NA coding downstream 268090 16236180 ~ 16236963 (+)
cbln1 cbln1,LOC107549644,LOC107583779 coding downstream 306589 16274679 ~ 16285044 (+)
LOC107197482 LOC102776007 coding downstream 538806 16506896 ~ 16511309 (+)
n4bp1 NA coding downstream 544244 16512334 ~ 16530595 (+)
trnal-cag_11 NA coding downstream 795436 16763526 ~ 16763608 (+)
G158644 fam192a non-coding upstream 17887 15936078 ~ 15942262 (+)
G158641 NA non-coding upstream 50858 15909003 ~ 15909291 (+)
G158640 NA non-coding upstream 52249 15907153 ~ 15907900 (+)
G158627 NA non-coding upstream 152616 15807319 ~ 15807533 (+)
G158624 NA non-coding upstream 187709 15772226 ~ 15772440 (+)
LOC111194770 NA non-coding downstream 1196 15969286 ~ 15986748 (+)
G158651 NA non-coding downstream 8762 15976852 ~ 15978946 (+)
G158652 NA non-coding downstream 10936 15979026 ~ 15979369 (+)
G158776 NA non-coding downstream 322686 16290776 ~ 16291007 (+)
G158786 lonp2 non-coding downstream 606594 16574684 ~ 16575374 (+)
LOC103041352 NA other upstream 183983 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 188204 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 191488 15768055 ~ 15768661 (+)
c18h11orf16 NA other upstream 644597 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 822879 15128368 ~ 15137270 (+)
G158779 NA other downstream 411169 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 574788 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 686046 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 811416 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 1133522 17101612 ~ 17172228 (+)

Expression


Co-expression Network