rspry1 (rspry1,LOC107583786,LOC107672266)


Basic Information

Item Value
gene id rspry1
gene name rspry1,LOC107583786,LOC107672266
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15947586 ~ 15959406 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249192.3
gaggaggaggaggaggaggtcgCTATAGAAATATGTGATGAGCTCACAGTGCTGAGTGCTCTGACTGATCCTCTGTAACGGGCTCTTCACCAGTTTATGACAGAAACATCTCATGGCTCGGCGGGCAGAACTTGGTGGATAGCCAAATCCGCGCTGTTATTCCTGAGCTTCAGTGGTTTTCCGCCGAGGGGACACGTTAAATTGTGTACCGGTGCCTCAGCAAATGTGGGCTACAGACTGGCTGCGTGTTCCTGTCTGTGGGCTTAGTCGCGTAGTGGAGTGTTAGCAGTTAGCTTCAGTTATACACTTCCTGTAGCGCTTTCGGGCTGGGCCTTGATACCGAGGAGGTGCCGCTGCTCTCCGATTAAGAAAAAACAGCGCGTCTGCTCATGTTAACGAGTGAAGAGTGAAGTGCTTCCTGGTGTAGGATGCTTGTTGACTGCAGCTCGAACGCTGTCGCTTCTTTCTGCTTGGCTGCTGACAGTCTGCAGTAGCACAATGATTGACATCTTTTTGCTGCCTGTCCTGAGGTGCCTCCCCAAGTCCTTCAAATGATATGATAGTAGCCACCTGGATTGCATTCTGTGCCAGCAGGAGCCTTGCGCGGGTTCTACGATTGACCGTAGAACAGCTGCGAACTGTAGAGTTCTGGCCAAGCTTTGCAGGCAGTGGAGCCATGGGGAACAGCTGTGTGTGCAGAGAAGACAGCGACGTGGAGGAGGGAGCAGCGCCTCGCAGGCAGCTGAGGCGAGTGGACAACTCGGCTGCTGATCCCCCGGAGGCCAGGAGCAGCCGGCCCAGGGACCCCGTCCGACCACCCAGACGAGGCCGGGGGCCTCATGAGCCACGACGGAAAAAGCAGAATGTGGATGGCCTGGTGCTGGATACACTGGCTGTCATCAGAACTCTTGTTGACAATGACCAAGAGCCACCTTACTCTATGATAACGTTGCATGAGATGGCTGAAACCGATGATGGATGGCTAGAAGTGGTGCAGTCTCTGATCCGAGTGATTCCTCTGGATGACCCACTCGGTCCGGCTGTGATCACCCTGCTGCTGGATGAATGCCCTCTGCCCACCAAAGATGCTTTGCAAAAGTTGTCAGACATGTTAAGTCTGAGTGGAGCCGTGGCTCGTCAGGACGCCCTTATCCCCGCCAAGCACCGCAACACCACTGCAGTACTAGGCTGCCTTGCTGAGAAACTTGCTGGCCCAGCTAGCATTGCACTCCTCAGCCCAGGAACCTTGGAGTATTTACTGGAGAGCCTgAGTTCAGAGGCCCATCCAACTGTAATGCTCTTTGCCCTCATTGCTCTGGAGAAGTTCTCCCAGACCAGTGAAAACAAGCTGACTGTGTCCGAGTCATGTATTAGCGATCGACTTGCTGTCTTGGAGTCCTGGGCAGATCACTCGGACTATCTTAAACGCCAGGTTGGCTTCTGTGCACAGTGGAGTCTTGACAACCTCTTTCTAAAAGATGGTCGCCAATTCACTTACGAGAAGGTCAATCTCAACAACATCAATGCCATGTTAAACAGCAATGATGTCAGTGAATATCTCAAGATATCTCCAAGTGGATTGGAGGCACGGTGTGATGCTTCGTCGTTTGAGAGTGTCCGCTGTACGTTCTGTGTGGACTCAGGGGTTTGGTACTATGAGGTCACAGTCATCACCTCTGGGGTCATGCAGATTGGCTGGGCCACAAAGGACAGCAAGTTCCTCAACCATgaGGGCTATGGGATTGGAGATGATGAGTACTCGTGTGCATACGATGGCTGCAGGCAGCTGATTTGGTACAATGCTCGCAGTAAACCTCACTCCCATCCCTGTTGGAAAGAAGGTGATGCCATAGGATTTTTGCTGGATCTCAGCAAGAAACAGATGGTTTTCTTCCTGAATGGACACCAACTTCCTCCTGAGAAGCAGGTGTTCTCCTCTGCCACgtCTGGCTTCTTTGCAGCAGCCAGTTTTATGTCCTACCAACAGTGTGAGTTTAACTTTGGGGCCAAGCCCTTCCGCCACCCCCCTTCTGTTAAGTTCAGCACCTTTAATGAGTTTGCCTCACTCGCATCCGATGAGAAGATCATCCTTCCCAGACATAGACGCCTAGCCCTTTTGAAGCAAGTTAGCATCAGAGATAACTGCTGCACCCTCTGCTGTGACAAGATGGCAGACACAGAGCTGAGACCCTGTGCACACAgTGGGATTTGTATGGAGTGTGCCTTACAGCTGGAAACGTGCCCCTTATGTCGACAGGACATTCAAACACGGGTCAGACTCATTTCCCATGTGTCCTGACACTAGCCCAGAAAGCCAGGGCATGGACACTCCCCCTAGCTTCCATCCCATCCAGTTCCCTCTGTCCAAGAGATCAACCTGACCAGTAGAACCATGATGCTGTTTCCAGTCTGGAAGCTACAGCTCAGAATGTTGTGAGGAAGGACATGGAACCTTTCCTTCTTCTAAAGACAGAGATTAGGTTTTTCGTCTTTTTAAGGAAGAAGCACATCTTCAAGATGGTCACACACCCCTATCAGAAAGGATGAGAGAGCTGAAGAAATCTGAGGAAGAAAAAAGGTTTCTGAGAAGTTCTAAGCACCATTTCCAGAAACCATACATGCCATACAAATGCCTGTCTAATAGTACATGCATTGCATATACAATCTGCCTAGGACTCTCTCTCTACAGGCTCTGATCAGCAGGGCCTGCATATCTCTGTGTTCAGATGTGTTAAATGTATCTGTGACTCTTCTCATGTTTTAGTCCAACTAAACCTTAAAGGCGCAACAAGAAAGACAGCAGTTCCCTAACCACTTTTATTTCCACGATGAatcattctctctcattctcattctcattctctctctctctctctctcttattctctctctctctcctctctct

Function

symbol description
rspry1 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to be active in cytoplasm. Orthologous to human RSPRY1 (ring finger and SPRY domain containing 1).

NR:

description
RING finger and SPRY domain-containing protein 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23332 RSPRY1; RING finger and SPRY domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249192.3 True 2905 mRNA 0.51 15 15947586 15959406

Neighbor

gene id symbol gene type direction distance location
cpne2 cpne2,LOC107583787,LOC107740309 coding upstream 15120 15878898 ~ 15932466 (+)
nlrc5 NA coding upstream 72351 15851856 ~ 15875235 (+)
cetp cetp coding upstream 100896 15833153 ~ 15846690 (+)
herpud1 NA coding upstream 114546 15823719 ~ 15833040 (+)
slc12a3 slc12a3,LOC107583876 coding upstream 125247 15808189 ~ 15822339 (+)
LOC103038143 NA coding downstream 743 15960149 ~ 15968090 (+)
LOC111194834 NA coding downstream 276774 16236180 ~ 16236963 (+)
cbln1 cbln1,LOC107549644,LOC107583779 coding downstream 315273 16274679 ~ 16285044 (+)
LOC107197482 LOC102776007 coding downstream 547490 16506896 ~ 16511309 (+)
n4bp1 NA coding downstream 552928 16512334 ~ 16530595 (+)
G158644 fam192a non-coding upstream 5324 15936078 ~ 15942262 (+)
G158641 NA non-coding upstream 38295 15909003 ~ 15909291 (+)
G158640 NA non-coding upstream 39686 15907153 ~ 15907900 (+)
G158627 NA non-coding upstream 140053 15807319 ~ 15807533 (+)
G158624 NA non-coding upstream 175146 15772226 ~ 15772440 (+)
LOC111194770 NA non-coding downstream 9880 15969286 ~ 15986748 (+)
G158651 NA non-coding downstream 17446 15976852 ~ 15978946 (+)
G158652 NA non-coding downstream 19620 15979026 ~ 15979369 (+)
G158776 NA non-coding downstream 331370 16290776 ~ 16291007 (+)
G158786 lonp2 non-coding downstream 615278 16574684 ~ 16575374 (+)
LOC103041352 NA other upstream 171420 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 175641 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 178925 15768055 ~ 15768661 (+)
c18h11orf16 NA other upstream 632034 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 810316 15128368 ~ 15137270 (+)
G158779 NA other downstream 419853 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 583472 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 694730 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 820100 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 1142206 17101612 ~ 17172228 (+)

Expression


Co-expression Network