herpud1


Basic Information

Item Value
gene id herpud1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15823719 ~ 15833040 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249196.3
GCTCTTAGCCAATCAGGCGCGGCCACACTGTGTTTTGGAAACAACACGCCCGAGTATTTCACCTCCATCAACTTCCACCGTGAGAGCCGAAACCGCGGGGGACAGCTTTATTACTCTGTACTGGAGAGCGAGGGAGCTGGATACACACGGAGCTGCTCTTTAAACCCAGGCTGGGGGGGTTATTAGGCTTATTTTGCGAGCATTGTGGAGACGGTACCGTAGCGTTATTGACGAGGTTAGCCAAGCTAGCTAAATAGCTTAGCTGTTgacagaagaagaaagagagaaagaacgagaaCACAGAGAGAATGGAGGACCTGAATGTTCAGGAGAAAGGAGAGATATCTCTTGTGGTTAAAACACCCAATCAGATACATGGCGACCAGCTGGTGGAGGGTGTAAATATTAACTGGACGGTGAAGGATCTGAAAACTCATCTGACAAGAGTTTATCCATCCAAACCGCCTGAGAAAGACCAGAGGCTTATCTACTCCGGAAAGCTGCTTCCAGACCACCTGCATATCAAAGATATTTTCAGACAGATGGACACCGTACCCATTATTCACCTTGTTTGTGCTTTCAAACCCCAGCCTGGTCCTCAGCAGGGTGCCATACCCAAGGTCAaaccagcagagcagcagcccTCTTCggcttcagctccagctcccgCTCGGCAGAGCACAAACTCTGCCGCTCCAGCGCCATCTGTGCCTACTGTGCCCTCCACCAGCGGCCTCAGACAGCGGGGTCACCCCGCCCCTGCTGTGCCCCATGCAGCATGGCCTGCCACAGGCACTGGCACGAGCACATCCACGCCAGCAGCAATGAACCATCCAGCCTTCCCTACTTACTCACTGTACAGTCCACAGCAGCTACTGTGGCTGCAGCATATGTATGCTCGCCAGTACTACATGCAGTACCAAGCTGCCATGGCAGCTGCCACTACTCCTGTGGCCCCTCCTGCTCCTTCTACACTTCCTGTTGCTCAACATCAAGCTGCTGTACCTGCAGCTCTGCCAAATCAGGGCCCGATTGACAACCtgccagccaatcagaatgcCCCAGACCCTGCCTTCATCAACCCGGAAGGAGCCAATCAAAATCTGCGGATGAATGCACAGGGTGGGCCAGTAATGGAGGATGAGGATGACGTGGAGCGTGATTGGCTTGATTGGGTTTACACTGCCAGCCGTTTTGCTGTGTTCCTGAGCATCGTTTACTTCTACTCCAACTTGAGTCGCTTCATCTTAGTGATGAGCAGCCTGTTCCTCATGTACCTGCACACTGCAGGCTGGTTCCCTTTCAGACACAGGGCTCAGGCCAGGGTACCAAATCAGCCTGCACCTGCACCTGAGGTCATTCAGAATCAGCAGAACCTGAATCTGAACCAAGAAGAGCAGCCAGAGCCGgTGGCAGCCCCTGCTGAAGCAGAGAACACTGAGGAGGCTGAGACTGAGGCAGAGGCTGAGGAGGAAGCTGTTGTTCAGCCCTCTATGACCGCAGTTCCTGTATCCCCAGTTAGACCTCCCATTCTCTGGACAGCCTGGATcttttttaaagccttttttgCCTCCTTGATCCCTGAGGTTCCTCAGGGTGTAGCCAACTGAGTGCAGTACAACCTGAAGCGTACGTGTAGATGGACTGATATGGCAAGAGTTATGCCCACTCTGAAGGAGCACCATCCAGGTCTTCTGTAAAAGGACTCTGTTGATTTTGATGGGACTTTGCAAACATTAtgtgtgatccctggtctagtcTTCACTTTTTATTCACTGAGTGAAGCTTAGGAATCACACAATCAGCACTTTCAAACAGTTTGGCGCTGTGACCAAAAACCTCATCTCTTCCCCCCTTGGCCAAACAGTAGTGTattgtatataatgtaaatacgTGCTGAATACAGTTGTAAATATACAAATGTACAGTTTTGCACAGCACTTTAGATCATCTTTATGGCAGCATAAGTCTTTTAGACGAATGCAGGGCTCATCCTGTCAGCAGGACTTTTCCATGAGTGCTTGAAGATGAGGGTCCAGGGATTAAACTCATGAGTGGCCCATGGCTTATCTAATCTAGATGGAAGCATGATTGACAATGAAGTCCATTCATCAGTTCTGGCACTTTGACAGTATAGGTTTCAGAGGATTATGCTTGTCTTGTTCAGAATTAATTATGTTTCGGTTCTTATTCTGTATCTTTGAGCTGAAGTTGATGTAGACAAATgtggagaaaatgaaaagaaagaatcATATTGTGGAAAAAATGAATGAGAGAGGACCTGAAGTTTTCTGTGAACAAAAGTGATCAAAAAAGTAGGACAGAATTTAATGGAGAGAATTTAAATGGTTCAGTTTGGAGCTTTGTTGTACATGAAGCTTTTGCATGTGACATAAAAGAAGTGAGCAGGGACCTGAAAGTAAACATGGTTAAGTACTTTGAGGAAGCGACTCATAAATGAAGGTACTGATCTggtattttagtttttgttttgttttattatttttcttcttcatttcattttcctttTCCATTTTAAAGGGAAATTTTCAGCTTGTTAagacgctgttaagatatgctATTTAACTTTGTATAAGGAACTgaaataataaactcctttacaaATA

Function

NR:

description
homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249196.3 True 2627 mRNA 0.47 8 15823719 15833040

Neighbor

gene id symbol gene type direction distance location
slc12a3 slc12a3,LOC107583876 coding upstream 1380 15808189 ~ 15822339 (+)
nup93 nup93,LOC107549634 coding upstream 19143 15777725 ~ 15804576 (+)
c18h16orf70 c4h16orf70,clg19h16orf70,si:dkey-102f14.5,LOC103042166,LOC107686270,LOC106573725,LOC105892482 coding upstream 73257 15737988 ~ 15750462 (+)
kiaa0513 kiaa0513,LOC107740318,LOC107583795 coding upstream 106508 15691503 ~ 15717211 (+)
LOC103043506 LOC108423614 coding upstream 135005 15678723 ~ 15688714 (+)
cetp cetp coding downstream 113 15833153 ~ 15846690 (+)
nlrc5 NA coding downstream 18816 15851856 ~ 15875235 (+)
cpne2 cpne2,LOC107583787,LOC107740309 coding downstream 45858 15878898 ~ 15932466 (+)
rspry1 rspry1,LOC107583786,LOC107672266 coding downstream 114546 15947586 ~ 15959406 (+)
LOC103038143 NA coding downstream 127109 15960149 ~ 15968090 (+)
G158627 NA non-coding upstream 16186 15807319 ~ 15807533 (+)
G158624 NA non-coding upstream 51279 15772226 ~ 15772440 (+)
G158582 NA non-coding upstream 238725 15583441 ~ 15584994 (+)
G158580 NA non-coding upstream 251381 15571534 ~ 15572338 (+)
G158576 NA non-coding upstream 319675 15503526 ~ 15504044 (+)
G158640 NA non-coding downstream 74113 15907153 ~ 15907900 (+)
G158641 NA non-coding downstream 75963 15909003 ~ 15909291 (+)
G158644 fam192a non-coding downstream 103038 15936078 ~ 15942262 (+)
LOC111194770 NA non-coding downstream 136246 15969286 ~ 15986748 (+)
G158651 NA non-coding downstream 143812 15976852 ~ 15978946 (+)
LOC103041352 NA other upstream 47553 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 51774 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 55058 15768055 ~ 15768661 (+)
c18h11orf16 NA other upstream 508167 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 686449 15128368 ~ 15137270 (+)
G158779 NA other downstream 546219 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 709838 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 821096 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 946466 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 1268572 17101612 ~ 17172228 (+)

Expression


Co-expression Network