cetp (cetp)


Basic Information

Item Value
gene id cetp
gene name cetp
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15833153 ~ 15846690 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249197.3
TGCTACTttgttttgatttgatttgcatTTGTTCTTGACCTACAGCCAAAAGAGGCCTGGCCTGATGACGTCTGATAAACCATCAGAATGCAAACTGCTAACAGCTGTTCTTTTGTAAAGGTATTTCCTGGACATGTGCACTCCCTCAATTATGCAAGAGGTTTGGATCTCTGTAGCCATGGCTCAAAATAATTTACTGCCATTCTCCAAAGCTTTGGGGTTACTGCTGGGTATGCAACCCCAATTACATTTATGTTATGCCATCAGCGGTCATGTGTCCGGTTTGATCTTGCCCTGGGCTTCTATTTGTGCTGTACAGGTAAAtgtcctcttttctttttttactggttAAACCATGTGGGTTGAATGCTAGTGGACTCTGACCTAAACATCAGTTCATCTTTGTACTCCTGCAGCTTGTTTTGGAGCTGGTAGAAGAACATTGTGTCAAAGCCTGCCCCTTACAGACCCTGTCCACCCCCACTTCTCTTAAGGCTATGCTTGCatccctcctcctccacctaAACCTCATTTCAGCTCTCTCATAACAGAGGTTTAGAACAAGGGGGAAAGAAAGGCAGCCAGTATCAGTTACAGCATTGGTGTTCAAAAGGATTGTAGAGACCGACAGGAATATGGCAGGAGCGTTTAGCCTTGGATTTGGACTGCTGCTGCTCTTCTCTTTTGTTGGAAAGGTGCACTCATGCCTGGACCCTGCTTCAGCCTACAAGTTAACCGGAGCCGTGTGCAGGCTCACCTACCCTGCTGCTGTGGTCTTAAATGAGAAGACTACAGAAGTAATCAAGGCTGCTTTCCAGCATGCAAAATATCCCAGCATTGAGGGAGAGAGGTCCATTCCGTTCGCAGGGAAACTGGAGTATCGATTGCACAACTTGGAAATCCACAATCTGTCTATTGGGAAGAGTGAGTTTGAGCTGCGGGAGAATGAAGGCATAGGGATCGACATTGGCAATGTTTCTGCTGTTTTCAAGGGAACCCTCAAATACTCATATGAGTCTGCTCTGTTCAGAATGGGCCAATCTATTGATTTTGAAATTGAGTCCATGATCGATCTGGTTATCAATTCCAAGCtgtacTGTGGAAAAGGCAAAGTGGCTGCAGACACTTCCGACTGCTACCTCACCTTCCACAAATTGCAGCTTCTACTACAAGACGATCGAGAGCCCGGCTGGTTGAAAAAATTGTTTACAAATGTAATCACCTTCACAATGAAGCTGGTGGTAAAGGGTCAGATCTGTAAGGAAATAAATAAGGTGGCAAACATACTGGCAGACTTCATCCAGGATACAGCAGAACAGTTTCTGAGTGATGGAGACATCTTTGTGGATATTGGCGTGACCTCGGCCCCGGTCATCACTTCCAATTATGTTGAGTCATATCATAAGGGCCTGGTAACCTATAATGGCTCAACTTCCATCATCAATGCATCCAGGTTTAAtccagaccagctgacagaagACCGCAGTCTTTACTTTTGGATTGGCGATGACCTTATGGACCCTCTGATGACTGCAGCCTATAATGATGGAAGATTCATCTGCAACATTTCAGGAGAAGAACTTATTggtCTGTTTCTGACTGAGCTATCTGCACCCAGGCCTGAGCTAGTGAGCAAGTGGCTGTCATCTGAGGAGCCGATGTTGAAAGCGTGGAGTGCCTCAGTGCCTCGTCTCTGGACAACTGACCAGGGTACATCAGTGAAAGCTGTGGCTGCAGTGGAGCTTCTGTCTGGCAAACAGGACagccctgcactttactttgaGACGGAAGTGGAGGTCTGTGTGAGAGCCTACTATGCTGATAAGAAGCTCATCTTGAAGGGCCAAGCGGTGCAAATATCCATATCAAAGGTGTCCACCTCATCAGGAGATTCTGAGATGGAGAACAGCTTAACCATTTTTCTCCAGGAGGCTGTAGAAAAGATTGGCATCCCCAAAGTCATATCCTATCTAGAGCCGGAATTAACTGCTCTGATGGACCGGCAAGGTCTACATCTCTTTGACCTCATCAATCCAGAAGTAATACCTCgagatGGTTATGTTTTAATACAGATGGACTTTGGTTTTCCTCAACATTTGCTGGTGGAGTTCCTTAAGAAGACTCTTGattgaaaaaacacacaatcaccAGATGTTAAAAGTAGACACACATAtccaccaatcagccataacttTAAAATCACCTGCCTAATATGATGTAGATGTTTTGTGGCACCAAAACAGTTGTGACGCATCAAGGCATGGGCTCCTCTGTTTGTGCTGCAGTAGATCTTCTGTAGGATCAGACCAAACAGTCTAGCCTTCACCGGTTCACCTGTTGTCTGTCCATGGCCTACATTTTGTAGGTACTGACCACTAAAACTCCGGAAACTTCAAAGAGGACCTCAGTTATGCTTGCCCATATTTTAGCACAGAAATCTTAATAACTGACTGTTTACTTGCTGCCTGATATGAATAACCTAtctttttaaagcactttttgaCTGATTTGACTTTTGAGTTCTGACTGTTTATATTACTCTTGAATATCTGTAAAATGTcacactttgtttttgttttgttttgttttgttttgtaaaggCAGTTGTAACAAATCCACTATTTGGATGACAGGAAACTTTCCATGCATGTAATGCAAACTATGATGGATCTTCTGCCTAGACGTAAAACACTCTATACTAtgaaaagtgtttcagtgtgtcttaCAGTAATTTACACACCTCCAGTATAAACTTGTTAgttaaagaataataaaatgtatagatAATGTTCACAGTAAAGGTatcttgttttgttctttgcaACACCGTACGTTGCGTTTCATtgtgaacagaccaatagaaatgctctaaaatgattTGGAATAAAAACGTTTTACACTTTGAAGCAAA

Function

symbol description
cetp Predicted to enable several functions, including cholesterol binding activity; phosphatidylcholine binding activity; and triglyceride binding activity. Predicted to be involved in several processes, including glycerolipid metabolic process; lipid homeostasis; and plasma lipoprotein particle remodeling. Predicted to act upstream of or within reverse cholesterol transport and steroid metabolic process. Predicted to be located in extracellular region. Predicted to be part of high-density lipoprotein particle. Is expressed in asteriscus; liver; otic vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in carotid artery disease and hyperalphalipoproteinemia 1. Orthologous to human CETP (cholesteryl ester transfer protein).

NR:

description
PREDICTED: cholesteryl ester transfer protein

GO:

id name namespace
GO:0043691 reverse cholesterol transport biological_process
GO:0034364 high-density lipoprotein particle cellular_component
GO:0008289 lipid binding molecular_function

KEGG:

id description
K16835 CETP; cholesteryl ester transfer protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249197.3 True 2911 mRNA 0.43 16 15833153 15846690

Neighbor

gene id symbol gene type direction distance location
herpud1 NA coding upstream 113 15823719 ~ 15833040 (+)
slc12a3 slc12a3,LOC107583876 coding upstream 10814 15808189 ~ 15822339 (+)
nup93 nup93,LOC107549634 coding upstream 28577 15777725 ~ 15804576 (+)
c18h16orf70 c4h16orf70,clg19h16orf70,si:dkey-102f14.5,LOC103042166,LOC107686270,LOC106573725,LOC105892482 coding upstream 82691 15737988 ~ 15750462 (+)
kiaa0513 kiaa0513,LOC107740318,LOC107583795 coding upstream 115942 15691503 ~ 15717211 (+)
nlrc5 NA coding downstream 5166 15851856 ~ 15875235 (+)
cpne2 cpne2,LOC107583787,LOC107740309 coding downstream 32208 15878898 ~ 15932466 (+)
rspry1 rspry1,LOC107583786,LOC107672266 coding downstream 100896 15947586 ~ 15959406 (+)
LOC103038143 NA coding downstream 113459 15960149 ~ 15968090 (+)
LOC111194834 NA coding downstream 389490 16236180 ~ 16236963 (+)
G158627 NA non-coding upstream 25620 15807319 ~ 15807533 (+)
G158624 NA non-coding upstream 60713 15772226 ~ 15772440 (+)
G158582 NA non-coding upstream 248159 15583441 ~ 15584994 (+)
G158580 NA non-coding upstream 260815 15571534 ~ 15572338 (+)
G158576 NA non-coding upstream 329109 15503526 ~ 15504044 (+)
G158640 NA non-coding downstream 60463 15907153 ~ 15907900 (+)
G158641 NA non-coding downstream 62313 15909003 ~ 15909291 (+)
G158644 fam192a non-coding downstream 89388 15936078 ~ 15942262 (+)
LOC111194770 NA non-coding downstream 122596 15969286 ~ 15986748 (+)
G158651 NA non-coding downstream 130162 15976852 ~ 15978946 (+)
LOC103041352 NA other upstream 56987 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 61208 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 64492 15768055 ~ 15768661 (+)
c18h11orf16 NA other upstream 517601 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 695883 15128368 ~ 15137270 (+)
G158779 NA other downstream 532569 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 696188 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 807446 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 932816 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 1254922 17101612 ~ 17172228 (+)

Expression


Co-expression Network