nup93 (nup93,LOC107549634)


Basic Information

Item Value
gene id nup93
gene name nup93,LOC107549634
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15777725 ~ 15804576 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249199.3
TCAGCGACGCCGTAGAGAAGAAACcgggagtgaaagagaggacGGAGCGGTGGATTCAGCTCTACTGTCAGGAACAGAGTTTTGGGATTAACTTGTGGACTGTAGGGCTTAGGAGAGAAGAGGCCACCAGGTGAAGCACATGGATGCCGAGGGCTTCGGGGAGCTCCTGCAGCAAGCAGAGCAGCTAGCAGCAGAGACCGAAGCCGTGTCTGAGCTGCCACATGTGGAACGGAATCTGCAAGAGCTTCAGCAGGCTGGAGAAAGGCTGCGTTCCCGCACTCTTACACGTACCTCTCAAGACACAGCCGATGTCAAAGCCTCTATTCTGCTGGGCTCCAGGGGTCTGGATATCTTTCATATTTCTCAGCGTCTGGAGAGTCTAAGTGCAGCCACAACCTTTGAGCCACTGGAACCAGTGAAGGATGCAGATATCCAGGGCTTTCTGAAGAACGAGAGAGACAATGCTCTGCTGTCCGCCATCGAGGAGTCTCGACGCAGGacATTCCTGCTGGCGGAAGAGTACCACCGCGAGTCTATGTTGGTGCAGTGGGAGCAGGTGAAGCAGAGAGTGCTACACACCCTGCTGGGAGCAGGAGAGGATGCATTGGACTTCAGCCAGGATGTAGAGccGAGTTTCGTAAGTGATGTCGGGGCTCCTGGACGCAGTGCTCTGGACAGTGTGGAGGTGGCCTATGGCAGACAGATCTACGTCTTCAATGAGAAAATAGTAAACGGACATGTTCAGCCCAGTCTTGGTGATTTGTGTGCGTCAGTGGCCGATAGTCTGGATGATAAGAATGTGTCCGACATGTGGCTGATGGTGAAGCAGATGACAGACGTGCTGCTGGTGCCagccaaagacacactgaaaagCCGCGTTGCTGTGGAGATGCAGATGGCTTTTGTCCGACAAGCCCTGACCTTCCTGGAAAACAGttaCAAGAACTACACCATGGTGACTGTGTTCGGGAACCTGCACCAGGCTCAGCTGGGTGGAGTGCCTGGCACTTATCAGCTGGTGAACAGCTTCCTCAACATCAAACTGCCCGGCCCGCTGCCAGGCATGCAGGATGGGGAGGTGGAGGGGCACCCAGTGTGGGCTCTGATCTATTACTGCCTGCGATGTGGAGACCTGTCTGCAGCCATGCAGGTGGTGAATCGGGCACAGCACCAGCTGGGAGACTTCAAGACCTGGTTCCAGGAGTACATGAACAGCCCTGACCGCCGTCTGGCTCCAGCTACAGAGAATAAGCTGCGACTGCATTACCGACGTGTACTACGCAACAGCGCTGATCCTTACAAGCGTGCCGTTTACTGCCTCATCGGCAAATGTGACATCGCAGACAACCACGGAGAAGTGGCAGATAAGACAGAGGACTACCTATGGCTGAAGCTGAACCAGGTGTGTTTCGATGATGACGGCAGCAGTGCTCCACAGGACAGGCTCACACTGGCTCAGCTACAGAAGCAGCTCCTGGAGGACTATGGCGAGTCTCATTTCTCGGCCAGCCAGCAGCCCTTCCTCTACTTCCAGGTGCTGTTCCTGACTGCACAGTTTGAAGCGGCTGTGGCATTCCTGTTCCGAGTAGAGCGCCTGCGCAGTCACGCTGTGCATGTGGCTCTCGTCCTCTATGAACTCAAACTGCTTCTCAAGTCGTCAGGACAGAGCGCACAGCTATTGAGTCAAGAACCAGGTGATCCTCCAATGGTGCGACGGCTAAACTTCATCCGTCTCCTCATGCTCTACACACGGAAATTTGAAGCCACAGATCCTCGAGAGGCCCTGCAGTACTTTTACTTCTTGCGGAACGAGAAAGATCACCAAGGAGAGAATATGTTCATGCGCTGCGTCAGTGAGCTGGTCATTGAGAGTCGTGAGTTTGACATGCTTCTGGGAAGACTGGAAAAAGATGGAAGCAGAAAGCCTGGCGTGATTGACAAGTTTGCCGGAGACACGCGGGCTATCATCACCAAAGTGGCCTCAGAGGCAGAGAACAAGGGCCTGTTTGAAGAAGCCGTCAAACTGTACGAGCTAGCCAAGAACCCTGATAAGGTGCTGGAGTTGATGAACAGGTTGCTGAGTCCAGTAATCGCCCAGGTCAGTGCACCACAGTCCAACAAAGAACGTCTCAAGAACATGGCGCTGGGCATCGCTGAACGGTTCCGTACTAATGGTGTGGCTGGAGAGAAGTCTGTGGACAGTACCTTCTACCTGCTGTTAGACCTCATGACCTTCTTTGATGAGTACCACGCTGGCCACATCGACCTTGCATATGATGTGATTGAGAGACTGAAGTTGGTTCCTTTGAGCCAAGACAGCGTAGAAGAGAGGGTGGCAGCATTCAGGAACTTCAGTGATGAGGTTAGACACAATTTATCAGAGGTGCTGCTTGCCACCATGAACATTTTGTTCACACAGTACAAGCGCCTAAAAGGAGCGACAGCCGGCACACCAGGCAGACCACAGCGCACACTAGAGGATCGGGACTCGCTACTGCGCAGCCAGGCCCGGGCACTGATCACCTTTGCTGGGATGATCCCATACCGCATGGCAGGAGACACCAACGCCAGACTGGTGCAGATGGAGGTCTTGATGAactgagcaagagagagaaagattgttCTTTCCCTCCTGCTTCTCCAACTGTTCCCATACCCCATCCACTTTTTGTTTCTCCATGCTTTGCAACCCCCTTGTGtgaatttatatttgtatttctttttcatcgttttgaaataaaaaaaatctcaaactTTTGTTCACCA
>XM_015605796.2
TCAGCGACGCCGTAGAGAAGAAACcgggagtgaaagagaggacGGAGCGGTGGATTCAGCTCTACTGTCAGGAACAGAGTTTTGGGATTAACTTGTGGACTGTAGGGCTTAGGAGAGAAGAGGCCACCAGGTGAAGCACATGGATGCCGAGGGCTTCGGGGAGCTCCTGCAGCAAGCAGAGCAGCTAGCAGCAGAGACCGAAGCCGTGTCTGAGCTGCCACATGTGGAACGGAATCTGCAAGAGCTTCAGCAGGCTGGAGAAAGGCTGCGTTCCCGCACTCTTACACGTACCTCTCAAGACACAGCCGATGTCAAAGCCTCTATTCTGCTGGGCTCCAGGGGTCTGGATATCTTTCATATTTCTCAGCGTCTGGAGAGTCTAAGTGCAGCCACAACCTTTGAGCCACTGGAACCAGTGAAGGATGCAGATATCCAGGGCTTTCTGAAGAACGAGAGAGACAATGCTCTGCTGTCCGCCATCGAGGAGTCTCGACGCAGGacATTCCTGCTGGCGGAAGAGTACCACCGCGAGTCTATGTTGGTGCAGTGGGAGCAGGTGAAGCAGAGAGTGCTACACACCCTGCTGGGAGCAGGAGAGGATGCATTGGACTTCAGCCAGGATGTAGAGccGAGTTTCGTAAGTGATGTCGGGGCTCCTGGACGCAGTGCTCTGGACAGTGTGGAGGTGGCCTATGGCAGACAGATCTACGTCTTCAATGAGAAAATAGTAAACGGACATGTTCAGCCCAGTCTTGGTGATTTGTGTGCGTCAGTGGCCGATAGTCTGGATGATAAGAATGTGTCCGACATGTGGCTGATGGTGAAGCAGATGACAGACGTGCTGCTGGTGCCagccaaagacacactgaaaagCCGCGTTGCTGTGGAGATGCAGATGGCTTTTGTCCGACAAGCCCTGACCTTCCTGGAAAACAGttaCAAGAACTACACCATGGTGACTGTGTTCGGGAACCTGCACCAGGCTCAGCTGGGTGGAGTGCCTGGCACTTATCAGCTGGTGAACAGCTTCCTCAACATCAAACTGCCCGGCCCGCTGCCAGGCATGCAGcagGATGGGGAGGTGGAGGGGCACCCAGTGTGGGCTCTGATCTATTACTGCCTGCGATGTGGAGACCTGTCTGCAGCCATGCAGGTGGTGAATCGGGCACAGCACCAGCTGGGAGACTTCAAGACCTGGTTCCAGGAGTACATGAACAGCCCTGACCGCCGTCTGGCTCCAGCTACAGAGAATAAGCTGCGACTGCATTACCGACGTGTACTACGCAACAGCGCTGATCCTTACAAGCGTGCCGTTTACTGCCTCATCGGCAAATGTGACATCGCAGACAACCACGGAGAAGTGGCAGATAAGACAGAGGACTACCTATGGCTGAAGCTGAACCAGGTGTGTTTCGATGATGACGGCAGCAGTGCTCCACAGGACAGGCTCACACTGGCTCAGCTACAGAAGCAGCTCCTGGAGGACTATGGCGAGTCTCATTTCTCGGCCAGCCAGCAGCCCTTCCTCTACTTCCAGGTGCTGTTCCTGACTGCACAGTTTGAAGCGGCTGTGGCATTCCTGTTCCGAGTAGAGCGCCTGCGCAGTCACGCTGTGCATGTGGCTCTCGTCCTCTATGAACTCAAACTGCTTCTCAAGTCGTCAGGACAGAGCGCACAGCTATTGAGTCAAGAACCAGGTGATCCTCCAATGGTGCGACGGCTAAACTTCATCCGTCTCCTCATGCTCTACACACGGAAATTTGAAGCCACAGATCCTCGAGAGGCCCTGCAGTACTTTTACTTCTTGCGGAACGAGAAAGATCACCAAGGAGAGAATATGTTCATGCGCTGCGTCAGTGAGCTGGTCATTGAGAGTCGTGAGTTTGACATGCTTCTGGGAAGACTGGAAAAAGATGGAAGCAGAAAGCCTGGCGTGATTGACAAGTTTGCCGGAGACACGCGGGCTATCATCACCAAAGTGGCCTCAGAGGCAGAGAACAAGGGCCTGTTTGAAGAAGCCGTCAAACTGTACGAGCTAGCCAAGAACCCTGATAAGGTGCTGGAGTTGATGAACAGGTTGCTGAGTCCAGTAATCGCCCAGGTCAGTGCACCACAGTCCAACAAAGAACGTCTCAAGAACATGGCGCTGGGCATCGCTGAACGGTTCCGTACTAATGGTGTGGCTGGAGAGAAGTCTGTGGACAGTACCTTCTACCTGCTGTTAGACCTCATGACCTTCTTTGATGAGTACCACGCTGGCCACATCGACCTTGCATATGATGTGATTGAGAGACTGAAGTTGGTTCCTTTGAGCCAAGACAGCGTAGAAGAGAGGGTGGCAGCATTCAGGAACTTCAGTGATGAGGTTAGACACAATTTATCAGAGGTGCTGCTTGCCACCATGAACATTTTGTTCACACAGTACAAGCGCCTAAAAGGAGCGACAGCCGGCACACCAGGCAGACCACAGCGCACACTAGAGGATCGGGACTCGCTACTGCGCAGCCAGGCCCGGGCACTGATCACCTTTGCTGGGATGATCCCATACCGCATGGCAGGAGACACCAACGCCAGACTGGTGCAGATGGAGGTCTTGATGAactgagcaagagagagaaagattgttCTTTCCCTCCTGCTTCTCCAACTGTTCCCATACCCCATCCACTTTTTGTTTCTCCATGCTTTGCAACCCCCTTGTGtgaatttatatttgtatttctttttcatcgttttgaaataaaaaaaatctcaaactTTTGTTCACCA
>XM_015605797.2
GTATGTGTGGCAAGCTAGAGCGTGGGCCGGCACAGAGTGAGCGAGGTCAGAAAACGCCCTCGAATGGCGCTGGCCCACTTCCTGAGGCGAGTCAAGGCAAGGCAAGTCAGGAGGAGAGCCGCTGCAAGCGCCTCTCCTGGCTACCTGAGCCTAACTGCACTTCTGCGCTGACAGGTTGAGCCCTGGCATGAGGCTTTCTGAAGAACGAGAGAGACAATGCTCTGCTGTCCGCCATCGAGGAGTCTCGACGCAGGacATTCCTGCTGGCGGAAGAGTACCACCGCGAGTCTATGTTGGTGCAGTGGGAGCAGGTGAAGCAGAGAGTGCTACACACCCTGCTGGGAGCAGGAGAGGATGCATTGGACTTCAGCCAGGATGTAGAGccGAGTTTCGTAAGTGATGTCGGGGCTCCTGGACGCAGTGCTCTGGACAGTGTGGAGGTGGCCTATGGCAGACAGATCTACGTCTTCAATGAGAAAATAGTAAACGGACATGTTCAGCCCAGTCTTGGTGATTTGTGTGCGTCAGTGGCCGATAGTCTGGATGATAAGAATGTGTCCGACATGTGGCTGATGGTGAAGCAGATGACAGACGTGCTGCTGGTGCCagccaaagacacactgaaaagCCGCGTTGCTGTGGAGATGCAGATGGCTTTTGTCCGACAAGCCCTGACCTTCCTGGAAAACAGttaCAAGAACTACACCATGGTGACTGTGTTCGGGAACCTGCACCAGGCTCAGCTGGGTGGAGTGCCTGGCACTTATCAGCTGGTGAACAGCTTCCTCAACATCAAACTGCCCGGCCCGCTGCCAGGCATGCAGcagGATGGGGAGGTGGAGGGGCACCCAGTGTGGGCTCTGATCTATTACTGCCTGCGATGTGGAGACCTGTCTGCAGCCATGCAGGTGGTGAATCGGGCACAGCACCAGCTGGGAGACTTCAAGACCTGGTTCCAGGAGTACATGAACAGCCCTGACCGCCGTCTGGCTCCAGCTACAGAGAATAAGCTGCGACTGCATTACCGACGTGTACTACGCAACAGCGCTGATCCTTACAAGCGTGCCGTTTACTGCCTCATCGGCAAATGTGACATCGCAGACAACCACGGAGAAGTGGCAGATAAGACAGAGGACTACCTATGGCTGAAGCTGAACCAGGTGTGTTTCGATGATGACGGCAGCAGTGCTCCACAGGACAGGCTCACACTGGCTCAGCTACAGAAGCAGCTCCTGGAGGACTATGGCGAGTCTCATTTCTCGGCCAGCCAGCAGCCCTTCCTCTACTTCCAGGTGCTGTTCCTGACTGCACAGTTTGAAGCGGCTGTGGCATTCCTGTTCCGAGTAGAGCGCCTGCGCAGTCACGCTGTGCATGTGGCTCTCGTCCTCTATGAACTCAAACTGCTTCTCAAGTCGTCAGGACAGAGCGCACAGCTATTGAGTCAAGAACCAGGTGATCCTCCAATGGTGCGACGGCTAAACTTCATCCGTCTCCTCATGCTCTACACACGGAAATTTGAAGCCACAGATCCTCGAGAGGCCCTGCAGTACTTTTACTTCTTGCGGAACGAGAAAGATCACCAAGGAGAGAATATGTTCATGCGCTGCGTCAGTGAGCTGGTCATTGAGAGTCGTGAGTTTGACATGCTTCTGGGAAGACTGGAAAAAGATGGAAGCAGAAAGCCTGGCGTGATTGACAAGTTTGCCGGAGACACGCGGGCTATCATCACCAAAGTGGCCTCAGAGGCAGAGAACAAGGGCCTGTTTGAAGAAGCCGTCAAACTGTACGAGCTAGCCAAGAACCCTGATAAGGTGCTGGAGTTGATGAACAGGTTGCTGAGTCCAGTAATCGCCCAGGTCAGTGCACCACAGTCCAACAAAGAACGTCTCAAGAACATGGCGCTGGGCATCGCTGAACGGTTCCGTACTAATGGTGTGGCTGGAGAGAAGTCTGTGGACAGTACCTTCTACCTGCTGTTAGACCTCATGACCTTCTTTGATGAGTACCACGCTGGCCACATCGACCTTGCATATGATGTGATTGAGAGACTGAAGTTGGTTCCTTTGAGCCAAGACAGCGTAGAAGAGAGGGTGGCAGCATTCAGGAACTTCAGTGATGAGGTTAGACACAATTTATCAGAGGTGCTGCTTGCCACCATGAACATTTTGTTCACACAGTACAAGCGCCTAAAAGGAGCGACAGCCGGCACACCAGGCAGACCACAGCGCACACTAGAGGATCGGGACTCGCTACTGCGCAGCCAGGCCCGGGCACTGATCACCTTTGCTGGGATGATCCCATACCGCATGGCAGGAGACACCAACGCCAGACTGGTGCAGATGGAGGTCTTGATGAactgagcaagagagagaaagattgttCTTTCCCTCCTGCTTCTCCAACTGTTCCCATACCCCATCCACTTTTTGTTTCTCCATGCTTTGCAACCCCCTTGTGtgaatttatatttgtatttctttttcatcgttttgaaataaaaaaaatctcaaactTTTGTTCACCA

Function

symbol description
nup93 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in nuclear pore complex assembly; poly(A)+ mRNA export from nucleus; and protein import into nucleus. Predicted to act upstream of or within mRNA transport and protein transport. Predicted to be located in nuclear membrane and nuclear periphery. Predicted to be part of nuclear pore. Human ortholog(s) of this gene implicated in nephrotic syndrome type 12. Orthologous to human NUP93 (nucleoporin 93).

NR:

description
nuclear pore complex protein Nup93 isoform X2

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0051292 nuclear pore complex assembly biological_process
GO:0051028 mRNA transport biological_process
GO:0005643 nuclear pore cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0034399 nuclear periphery cellular_component
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG:

id description
K14309 NUP93, NIC96; nuclear pore complex protein Nup93

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249199.3 False 2766 mRNA 0.53 22 15777725 15804576
XM_015605796.2 True 2769 mRNA 0.53 22 15777725 15804576
XM_015605797.2 False 2524 mRNA 0.53 20 15788837 15804576

Neighbor

gene id symbol gene type direction distance location
c18h16orf70 c4h16orf70,clg19h16orf70,si:dkey-102f14.5,LOC103042166,LOC107686270,LOC106573725,LOC105892482 coding upstream 27263 15737988 ~ 15750462 (+)
kiaa0513 kiaa0513,LOC107740318,LOC107583795 coding upstream 60514 15691503 ~ 15717211 (+)
LOC103043506 LOC108423614 coding upstream 89011 15678723 ~ 15688714 (+)
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding upstream 276512 15482444 ~ 15501213 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding upstream 401561 15373349 ~ 15376164 (+)
slc12a3 slc12a3,LOC107583876 coding downstream 3613 15808189 ~ 15822339 (+)
herpud1 NA coding downstream 19143 15823719 ~ 15833040 (+)
cetp cetp coding downstream 28577 15833153 ~ 15846690 (+)
nlrc5 NA coding downstream 47280 15851856 ~ 15875235 (+)
cpne2 cpne2,LOC107583787,LOC107740309 coding downstream 74322 15878898 ~ 15932466 (+)
G158624 NA non-coding upstream 5285 15772226 ~ 15772440 (+)
G158582 NA non-coding upstream 192731 15583441 ~ 15584994 (+)
G158580 NA non-coding upstream 205387 15571534 ~ 15572338 (+)
G158576 NA non-coding upstream 273681 15503526 ~ 15504044 (+)
G158565 zc3h18,LOC107672267 non-coding upstream 316719 15452216 ~ 15461006 (+)
G158627 NA non-coding downstream 2743 15807319 ~ 15807533 (+)
G158640 NA non-coding downstream 102577 15907153 ~ 15907900 (+)
G158641 NA non-coding downstream 104427 15909003 ~ 15909291 (+)
G158644 fam192a non-coding downstream 131502 15936078 ~ 15942262 (+)
LOC111194770 NA non-coding downstream 164710 15969286 ~ 15986748 (+)
LOC103041352 NA other upstream 1559 15775424 ~ 15776166 (+)
LOC107197617 NA other upstream 5780 15771295 ~ 15771945 (+)
LOC103041858 NA other upstream 9064 15768055 ~ 15768661 (+)
c18h11orf16 NA other upstream 462173 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 640455 15128368 ~ 15137270 (+)
G158779 NA other downstream 574683 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 738302 16542878 ~ 16571458 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other downstream 849560 16654136 ~ 16725209 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other downstream 974930 16779506 ~ 16798400 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other downstream 1297036 17101612 ~ 17172228 (+)

Expression


Co-expression Network