chtf8 (chtf8,LOC107583916,LOC107569647)


Basic Information

Item Value
gene id chtf8
gene name chtf8,LOC107583916,LOC107569647
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15373349 ~ 15376164 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249216.3
tttgaaagtgtgCCAAAGTTCACTAGGTTGAACTGGCGGGAGACTTGAGAGCTCTTATTACGGTTTATACACATACAGCCAGCTCCTGCTCAGCTGTTATTTGGATTTTATAAACGACAgtcatatttttattagatGTAAACGTATGATTAATTGCATTGACATTTAGCTAAGTAGTTAATTTAACGGTAGATACGGCATTTCGTTTAGTTTGACTCTTACAGACAGAGCGTTAGCTACGCTAGCTAGCATCATAAACAGCGTTTGTTTTGAGATCAACCCCTACTGAGATCAGCTGTAGTTATTTGCCATGGTTCAGATAGTCATCTCAAGTAAGGCTGGGGAAGGTCCTGATGAATGGTTGCTGGTGGAGTTACAGGGTGAGATGTTGTCGAGACAGAACACTGGTCTGGCTGGAAATCTTATGGGAGATCTGCACTACACGAAAGAGGGTGTACCAGTGCTGATAGTGGGACATCACATCCTCTATGGGAAACAGGTGAAACTGGAGAAACCCTTTGCTGTCCTGATGAAGCACTCTGGCCTCCCCCAGGAGGGTGAGGTAGCCATGGAATGTAGCGAAGAGAAGCCTACCACCTACACTGTTACAGCGCTTATCAAAAAGAAGCTCATATTCAAGACCCGCCCTAAACCTATCATTACTAATGTGCCTAAGAAGGTTTAGCTAATGGACTGTCAAACTGGACCGTGGGAGGCCTGCTATATAATTCAGCAGCATGTTAAGCACTTCTGTTTTCACTGACTCTGTTCTGTAAGATTTATGTTGAGGTAAAATGTTGAACATGCACTGCAGAAGTTGTCTTGGAACATCAAAACAAAAGTACATGATCGAGAGATTGGTTTGCTGAATGTAGTCAAATACAGTATACCTACAGACTATACAATTATATTTACTGGTGGCAAAAGTCCTCATTGTGTATTTGACAAACCATTACTGTCAAAGTGTAAGTGTTTCATGTATGTGTAGGACACGTAGGCATTTAGTTcacaaaaaaggtttatttttttttttaaaacatttgtaagGTATAATAAAGAtatgcaaaaataaacacagttgATGTTGCAATAGTCATatcaaa

Function

symbol description
chtf8 Predicted to act upstream of or within mitotic sister chromatid cohesion. Predicted to be part of Ctf18 RFC-like complex. Orthologous to human CHTF8 (chromosome transmission fidelity factor 8).

NR:

description
chromosome transmission fidelity protein 8 homolog

GO: NA

KEGG:

id description
K11270 CTF8; chromosome transmission fidelity protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249216.3 True 1103 mRNA 0.40 3 15373349 15376164

Neighbor

gene id symbol gene type direction distance location
LOC103046975 NA coding upstream 26240 15342494 ~ 15347109 (+)
LOC111194727 NA coding upstream 38347 15333873 ~ 15335002 (+)
LOC103021723 LOC108426425 coding upstream 42019 15321270 ~ 15331330 (+)
nrip3 nrip3 coding upstream 69338 15298945 ~ 15304011 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding upstream 217740 15150051 ~ 15155609 (+)
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding downstream 106280 15482444 ~ 15501213 (+)
LOC103043506 LOC108423614 coding downstream 302559 15678723 ~ 15688714 (+)
kiaa0513 kiaa0513,LOC107740318,LOC107583795 coding downstream 315339 15691503 ~ 15717211 (+)
c18h16orf70 c4h16orf70,clg19h16orf70,si:dkey-102f14.5,LOC103042166,LOC107686270,LOC106573725,LOC105892482 coding downstream 361824 15737988 ~ 15750462 (+)
nup93 nup93,LOC107549634 coding downstream 401561 15777725 ~ 15804576 (+)
G158486 tbc1d15,LOC107686258,LOC107672302,LOC107749074,LOC107579928 non-coding upstream 6227 15363757 ~ 15367122 (+)
G158477 NA non-coding upstream 53664 15315957 ~ 15319685 (+)
G158475 NA non-coding upstream 67886 15304809 ~ 15305463 (+)
G158461 znf143,znf143b non-coding upstream 77957 15291441 ~ 15295392 (+)
G158472 znf143,znf143b,LOC107672322,LOC107583804 non-coding upstream 82622 15284904 ~ 15290727 (+)
G158555 NA non-coding downstream 15495 15391659 ~ 15393165 (+)
G158565 zc3h18,LOC107672267 non-coding downstream 76052 15452216 ~ 15461006 (+)
G158576 NA non-coding downstream 127362 15503526 ~ 15504044 (+)
G158580 NA non-coding downstream 195370 15571534 ~ 15572338 (+)
G158582 NA non-coding downstream 207277 15583441 ~ 15584994 (+)
c18h11orf16 NA other upstream 57797 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 236079 15128368 ~ 15137270 (+)
G158369 NA other upstream 322631 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1393324 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1630849 13733945 ~ 13742500 (+)
LOC103041858 NA other downstream 391891 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 395131 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 399260 15775424 ~ 15776166 (+)
G158779 NA other downstream 1003095 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 1166714 16542878 ~ 16571458 (+)

Expression


Co-expression Network