LOC103046975



Basic Information


Item Value
gene id LOC103046975
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15342494 ~ 15347109 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007249220.3
acacacacacagaccgaGCGGAAGTTTtgaaagtgaaagtgtgtgGATGTAGGCTTCATTTGCATGAACTCGGTTATTTTACAGCTCAGGATTCAGGCCCTGCAGCGGGACAGTGAGTTATTTCTACTTCCTGATCTCTCAGCAGCTGCAGGTTGGCGCAGAGTTGCTGTATAGTCGCTAGTTTAAGGTGTTTAAGCTGAGCTGAGTCTTGTTTTAAGGAGCAGTTTAGCAGGTCCTGTACTGAGCTGTGGTTTCTCAGTATCTTGAGGacttgtgtgagtgtgagtacaGCTGGAGCATGGAAGCCAACGTCTCATTAGAAAGCCAGTTCATCTTTGAACACCAGCTCCTGAAGGAGTACTGCGGTAGAAGAAAGCCATGGGGGAAACCAAGGGGGAAACCAAGGGTAGCCCCTATGTGTGCTGCAACCCAGCAGGGAGTGATGAGAAAACTCAAAAGCAGCAACGAAAGATGTCTTCTCGAAACTGACAGTTCTGATGACACACATGATGTTAGGGGTGTGGCTGATAACCTGGTCCAGATTGTGGACAGCACACCTCTTGTTCAGGATCAGCTTGTAGCACAAAGTGGTGTTGATGTCATCCAGAGGCTGGTTGAATTATTGAAAGAATCTGGTGATGAGTTGAATGAAAAGATTCAAAAGGACCGTGTGCTTTTAGGCTATCTCCAGAGCTCTTTCTCTTACACTGTGTTTGAGAAACTGGCCTCGGCCTTTATCGGCAGTCCAATGCCCTCACAAAGTCAGAATCAAAATGCTGATGAGCAGAAGAAACAGATTGCCTGGACCTTTGAGATGACTAGCAGGCTGACAGCTCTGGACCTGCAGCCTATGAACAGAGCCATGGGTTTCGGAGCCCAGTACCTGCACCAGAATTTTGCACAGTGGATTCAACAGAATGGTGGCTGGgaaaaagtgtttaaaagagATGAGAGTGACGAGTGAAAAGGAATACTACAAGATATTGTGTTGCAGTATGGCTACCTCCTGAGTGCTCATCAAAGAGTTCCCTTGCTGTAGCAGCACTCATCAAACACAGGGATGCATTTTTCTATTTGTGATGTATTTCTGTACAACTGAAGCAACAATGCAGGACTGACCTGTTATTGTCCTGCACATTTTCAAGTCTTAATGAATGGCATCTAATGAAACAGTGACCAATCAGTCTAATGCTTATGTTTGTAAGTTTAACAATTCTAACTATTTCTTGTTGcatatgtatttgtgtatgtgagtgtgttttatgtgcTAGGTTTATCACAGGCTTTGTCACAACAAACTGGGCAACTTAacacttaaaacatttaaaatataatattttattgacCAAGAATATGATACATATATCTTCTTAACCACAAATAAAGCAAGCACCACAATGTAATACCCAAACATGTGAACTGTAGCATTCACTCAGTTGCTTAGTAATTCAATTTAATCAATTCACATTTGACACTGATTTTAAATTCATGAGTAATTTATGCAGTACATACTTGCACAGCAATGATCACCTTAGCCTGTGTTCTGCagcttaaaatgaaaaaaaaaaaaaaaacacacattcaattCTGATTATCCTATAATTAGCATATATCAGGGTCACAAACAGACACAAGGAACTGAGACAATTATTAGGCCATTTATGATCAAGTGATCTGAATAGTGTATATGTTGTTTGTGGATCCCCAGATCAACAATATGTAGCAATCCATTtcaatgcaataaaaatgtgaaatcaagaga

Function


GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042612 MHC class I protein complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko04650 Natural killer cell mediated cytotoxicity
ko04612 Antigen processing and presentation

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007249220.3 True 1762 mRNA 0.41 5 15342494 15347109
Loading

Neighbor


gene id symbol gene type direction distance location
LOC111194727 NA coding upstream 7492 15333873 ~ 15335002 (+)
LOC103021723 LOC108426425 coding upstream 11164 15321270 ~ 15331330 (+)
nrip3 nrip3 coding upstream 38483 15298945 ~ 15304011 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding upstream 186885 15150051 ~ 15155609 (+)
LOC103024643 NA coding upstream 193859 15144072 ~ 15148635 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding downstream 26240 15373349 ~ 15376164 (+)
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding downstream 135335 15482444 ~ 15501213 (+)
LOC103043506 LOC108423614 coding downstream 331614 15678723 ~ 15688714 (+)
kiaa0513 kiaa0513,LOC107740318,LOC107583795 coding downstream 344394 15691503 ~ 15717211 (+)
c18h16orf70 c4h16orf70,clg19h16orf70,si:dkey-102f14.5,LOC103042166,LOC107686270,LOC106573725,LOC105892482 coding downstream 390879 15737988 ~ 15750462 (+)
G158477 NA non-coding upstream 22809 15315957 ~ 15319685 (+)
G158475 NA non-coding upstream 37031 15304809 ~ 15305463 (+)
G158461 znf143,znf143b non-coding upstream 47102 15291441 ~ 15295392 (+)
G158472 znf143,znf143b,LOC107672322,LOC107583804 non-coding upstream 51767 15284904 ~ 15290727 (+)
G158467 wee1,LOC108264466,LOC107686254,LOC107580369,LOC107758614,LOC107740329,LOC107583885 non-coding upstream 62473 15277623 ~ 15280021 (+)
G158486 tbc1d15,LOC107686258,LOC107672302,LOC107749074,LOC107579928 non-coding downstream 16648 15363757 ~ 15367122 (+)
G158555 NA non-coding downstream 44550 15391659 ~ 15393165 (+)
G158565 zc3h18,LOC107672267 non-coding downstream 105107 15452216 ~ 15461006 (+)
G158576 NA non-coding downstream 156417 15503526 ~ 15504044 (+)
G158580 NA non-coding downstream 224425 15571534 ~ 15572338 (+)
c18h11orf16 NA other upstream 26942 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 205224 15128368 ~ 15137270 (+)
G158369 NA other upstream 291776 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1362469 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1599994 13733945 ~ 13742500 (+)
LOC103041858 NA other downstream 420946 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 424186 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 428315 15775424 ~ 15776166 (+)
G158779 NA other downstream 1032150 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 1195769 16542878 ~ 16571458 (+)

Expression


LOC103046975 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC103046975 Expression in each Bioproject

Bar chart with 7 bars.
LOC103046975 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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Co-expression Network