LOC103021723 (LOC108426425)


Basic Information

Item Value
gene id LOC103021723
gene name LOC108426425
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15321270 ~ 15331330 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249225.3
ctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacgcgcacgctCGCACTTCACCACATGCCCTCGCATACCCCTTCCGTCTCGCTGGGGGTGGAGGGGGCGCGCGAGTGACTGGAGAGATGAGATCGGGGATTTAGGAGAGCATAAAATTACATCCACACGTGCAGCTCAGCGTTACGTAATAGCGCCTGCCAGCCTGCTGCCCTCGCGAGCGCGCGGAGGAGCGAGCACGAGCAGAACCGGAGCCTCAGCAACAGAAACACCCGCCCAGACATCCTCAGCGCGAGCATGCGGACACTTCGGGCTCTCCGCGGAGCCTCGGGATTCTCCACGGATTCTCTTCAGGCTGAGAGCACTGGGAGACCACCTCACTGAGCCGTCCTGCCTGCCTCACCTGATCCGCCTCACCTGATCCAGCTCACCTGGAGGCTCTCTGACTCCTCCGCTGCGGGGATGCTAATGCCAGCGCTGCTGAGGCTGAGATATGTGTAGGCTGCTGTGCGGATTATTATTACCCTAACTCCTACAGGACTCATCTGCCCCTCGGCCGGGCTGCGCGTGAGTGTGGGTGGCGCCCCCCTGAGGCCGTGGCAGGATGCGGTCCGCGTGGCCGCtggtgtgggcagtgtgtgggCTGAGCGCGGGGGCTCCCCCTGCCCACGGAGCATCAGTCAGCCCCATCCTGCTCGTGAGCACCGTGGCCACGCCCACCGAGGATCAgaccacgcccacagagtctcTTAACAACAATGACACAGGTGGCTTGAGCTGTGTGTCTCTGCTCCCCCCACGGAGAGGGTCCTACTATGTGGAGCAGGGCACTGGGGTGTCTGTAGGCTCTATCCTGGTGTTCTGGTGTCGGGAGGGATACCAGCTGGTGGGCAGTGAGAAGATCACCTGCATGGTCCGTGCAGGTGTTCCACGCTGGAGTAATTACCTGCCTGTTTGTGAGAGCATCCCAAAGCCAGATGACCAGGGCTTGCGTATGGCATTGCTGGTGTCTGTGGTCAGTGGTGTGGTCATTCTAGTCATGACGGTTTCGTTTATTGTGTGCTGTATCCAGGAGCACATGAGCAAAAAGAAGGAGAAGCACCGGTCAGGCAGGAGCAGGAGAAGAGAAAAACGCCATTCGAGATCCAGAAGAAGCCCATCCTGGTTAGTCCGGGAGGAGCTGGACTGGGAAGCTTTCCCACCTCCGAAAATCTTCAATGTGTCTCAGCGTTTTGAGCGAACAGCACCTGCTGGTAGCCCTCTTTACCCTGGGGTCACAAGAGGCTACGAAAACAGAGGGAGTCAGGAGAGCCTGCTGAGGAGCCCTCACCCTGGAGTCTACCACACAGACAGCCAGGTCTACCCCCATCTGGTGCTCCAGAGGGTACAAACAGCTCCAAACCCTCAGGCCAGCCCCACAACGCCAGTCTACCTGCACATCTCCACTCCTCCCAATGCGGCCAAAGCTCAGCGCCGCCCTCCTGTCACCCTCCCATAGACTGATAATGACTCTGCCACAATCAAATCACCCAAATGACTGCCCACACTGGATGTGGCCATGCCAAGTCTACCTAGAAAGCAAGGAGAGGATGAGAGAATTTCCTTAGAGACTAAATGGTCTTTGTGACCAGGTGAAgcactttgttttatttttttttttacagtaaaccaCTAAAAACTCttctaaatgtaaattattttcagttagatttacaataaatattatatatagtatatgtaaatatatatatatcccattTGGGGTGCCTGCTTAATGTGCATTTCTTGATGGAATATTTCAGTGCAATATCTTAAACTCCTTATCTCCCTGTCTTTTATTACATCATAAGGATTACTATAATTCAGTAACTACATGGACAGGAATGCAATGTTGCTAAGTGAGAAACAAAAGCCAGGAATCACAGGTGGTTCTGCAAAGTTTACGAGGTTAAGCTGCCAACCGACTGTAAATACAGCCAAAAACTGTAAATACAACTTTATTGTGCTAAGAATTTTAAGGATGCTCCTTATTTAGGACCGACAACTTAATATAGAGTCCAATATATTTTAGATGAACAGTTATTAACTACCTACCTTTGGTCAGTTCTGTGTTTCGTCTGAACTGTGGTCGGAcactgaatttgttttcttagcTCACTTATTGATGTGAAAGTGTTTGTTGTGGACTGCTGACCAAAattgtattctataaaaaatGACCCACTTCAACAAAAATTAAGCTTTACATTTTGTAGTGAtgtggtttttaataaagtgataTTGTTGTCCACATATTTGTTACGGTGCTGCTAATACTTAATTCACTTTAAAGCTCTCTCAATAAACAAATGAGCACTTTTATGTTCT
>XM_015605785.2
tctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacgcgcacgctCGCACTTCACCACATGCCCTCGCATACCCCTTCCGTCTCGCTGGGGGTGGAGGGGGCGCGCGAGTGACTGGAGAGATGAGATCGGGGATTTAGGAGAGCATAAAATTACATCCACACGTGCAGCTCAGCGTTACGTAATAGCGCCTGCCAGCCTGCTGCCCTCGCGAGCGCGCGGAGGAGCGAGCACGAGCAGAACCGGAGCCTCAGCAACAGAAACACCCGCCCAGACATCCTCAGCGCGAGCATGCGGACACTTCGGGCTCTCCGCGGAGCCTCGGGATTCTCCACGGATTCTCTTCAGGCTGAGAGCACTGGGAGACCACCTCACTGAGCCGTCCTGCCTGCCTCACCTGATCCGCCTCACCTGATCCAGCTCACCTGGAGGCTCTCTGACTCCTCCGCTGCGGGGATGCTAATGCCAGCGCTGCTGAGGCTGAGATATGTGTAGGCTGCTGTGCGGATTATTATTACCCTAACTCCTACAGGACTCATCTGCCCCTCGGCCGGGCTGCGCGTGAGTGTGGGTGGCGCCCCCCTGAGGCCGTGGCAGGATGCGGTCCGCGTGGCCGCtggtgtgggcagtgtgtgggCTGAGCGCGGGGGCTCCCCCTGCCCACGGAGCATCAGTCAGCCCCATCCTGCTCGTGAGCACCGTGGCCACGCCCACCGAGGATCAgaccacgcccacagagtctcTTAACAACAATGACACAGGTGGCTTGAGCTGTGTGTCTCTGCTCCCCCCACGGAGAGGGTCCTACTATGTGGAGCAGGGCACTGGGGTGTCTGTAGGCTCTATCCTGGTGTTCTGGTGTCGGGAGGGATACCAGCTGGTGGGCAGTGAGAAGATCACCTGCATGGTCCGTGCAGGTGTTCCACGCTGGAGTAATTACCTGCCTGTTTGTGAGAGCATCCCAAAGCCAGATGACCAGGGCTTGCGTATGGCATTGCTGGTGTCTGTGGTCAGTGGTGTGGTCATTCTAGTCATGACGGTTTCGTTTATTGTGTGCTGTATCCAGGAGCACATGAGCAAAAAGAAGGAGAAGCACCGGTCAGGCAGGAGCAGGAGAAGAGAAAAACGCCATTCGAGATCCAGAAGAAGCCCATCCTGGTTAGTCCGGGAGGAGCTGGACTGGGAAGCTTTCCCACCTCCGAAAATCTTCAATGTGTCTCAGCGTTTTGAGCGAACAGCACCTGCTGGTAGCCCTCTTTACCCTGGGGTCACAAGAGGCTACGAAAACAGAGGGTACGAGAGGAGTCAGGAGAGCCTGCTGAGGAGCCCTCACCCTGGAGTCTACCACACAGACAGCCAGGTCTACCCCCATCTGGTGCTCCAGAGGGTACAAACAGCTCCAAACCCTCAGGCCAGCCCCACAACGCCAGTCTACCTGCACATCTCCACTCCTCCCAATGCGGCCAAAGCTCAGCGCCGCCCTCCTGTCACCCTCCCATAGACTGATAATGACTCTGCCACAATCAAATCACCCAAATGACTGCCCACACTGGATGTGGCCATGCCAAGTCTACCTAGAAAGCAAGGAGAGGATGAGAGAATTTCCTTAGAGACTAAATGGTCTTTGTGACCAGGTGAAgcactttgttttatttttttttttacagtaaaccaCTAAAAACTCttctaaatgtaaattattttcagttagatttacaataaatattatatatagtatatgtaaatatatatatatcccattTGGGGTGCCTGCTTAATGTGCATTTCTTGATGGAATATTTCAGTGCAATATCTTAAACTCCTTATCTCCCTGTCTTTTATTACATCATAAGGATTACTATAATTCAGTAACTACATGGACAGGAATGCAATGTTGCTAAGTGAGAAACAAAAGCCAGGAATCACAGGTGGTTCTGCAAAGTTTACGAGGTTAAGCTGCCAACCGACTGTAAATACAGCCAAAAACTGTAAATACAACTTTATTGTGCTAAGAATTTTAAGGATGCTCCTTATTTAGGACCGACAACTTAATATAGAGTCCAATATATTTTAGATGAACAGTTATTAACTACCTACCTTTGGTCAGTTCTGTGTTTCGTCTGAACTGTGGTCGGAcactgaatttgttttcttagcTCACTTATTGATGTGAAAGTGTTTGTTGTGGACTGCTGACCAAAattgtattctataaaaaatGACCCACTTCAACAAAAATTAAGCTTTACATTTTGTAGTGAtgtggtttttaataaagtgataTTGTTGTCCACATATTTGTTACGGTGCTGCTAATACTTAATTCACTTTAAAGCTCTCTCAATAAACAAATGAGCACTTTTATGTTCT

Function

NR:

description
PREDICTED: uncharacterized protein LOC108426425 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249225.3 False 2384 mRNA 0.50 5 15321271 15331330
XM_015605785.2 True 2394 mRNA 0.50 5 15321270 15331330

Neighbor

gene id symbol gene type direction distance location
nrip3 nrip3 coding upstream 17259 15298945 ~ 15304011 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding upstream 165661 15150051 ~ 15155609 (+)
LOC103024643 NA coding upstream 172635 15144072 ~ 15148635 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding upstream 200965 15107363 ~ 15120305 (+)
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding upstream 490926 14818068 ~ 14830344 (+)
LOC111194727 NA coding downstream 2543 15333873 ~ 15335002 (+)
LOC103046975 NA coding downstream 11164 15342494 ~ 15347109 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding downstream 42019 15373349 ~ 15376164 (+)
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding downstream 151114 15482444 ~ 15501213 (+)
LOC103043506 LOC108423614 coding downstream 347393 15678723 ~ 15688714 (+)
G158477 NA non-coding upstream 1585 15315957 ~ 15319685 (+)
G158475 NA non-coding upstream 15807 15304809 ~ 15305463 (+)
G158461 znf143,znf143b non-coding upstream 25878 15291441 ~ 15295392 (+)
G158472 znf143,znf143b,LOC107672322,LOC107583804 non-coding upstream 30543 15284904 ~ 15290727 (+)
G158467 wee1,LOC108264466,LOC107686254,LOC107580369,LOC107758614,LOC107740329,LOC107583885 non-coding upstream 41249 15277623 ~ 15280021 (+)
G158486 tbc1d15,LOC107686258,LOC107672302,LOC107749074,LOC107579928 non-coding downstream 32427 15363757 ~ 15367122 (+)
G158555 NA non-coding downstream 60329 15391659 ~ 15393165 (+)
G158565 zc3h18,LOC107672267 non-coding downstream 120886 15452216 ~ 15461006 (+)
G158576 NA non-coding downstream 172196 15503526 ~ 15504044 (+)
G158580 NA non-coding downstream 240204 15571534 ~ 15572338 (+)
c18h11orf16 NA other upstream 5718 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 184000 15128368 ~ 15137270 (+)
G158369 NA other upstream 270552 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1341245 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1578770 13733945 ~ 13742500 (+)
LOC103041858 NA other downstream 436725 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 439965 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 444094 15775424 ~ 15776166 (+)
G158779 NA other downstream 1047929 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 1211548 16542878 ~ 16571458 (+)

Expression


Co-expression Network