nrip3 (nrip3)


Basic Information

Item Value
gene id nrip3
gene name nrip3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15298945 ~ 15304011 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249226.3
GAGCTGAACAGAGGAGCAGCATGGAGCTGAGAGAGGCGGCGGCTCTCCGCCAGCAGCGCAGGATTAAACAGGCGATCCAGTTTTTACACAAGGATTCAGCGGACCTGCTGCCTTTAGATGGCCTCAAGAAACTGGGAACCTCTAAAGAGGGGCAACCACATAACATTCTCCAGAGAAGGCTGCTGGAGGCCAACTTATCACGAAACAGACTCAACAGCCGCACAATGAAAGCACCTGTGAATAATATAGTTCAGAGCCATGGTGTTAACAGCGAGACACAGGAGACGGAGAGTGACCTCATTCAAGTCATGGGTCAGTGCTCAGGGCGGGAGGTGGTGGTTACTGTCAACACTGGCTGTACATTAAACCTCATATCATCAGTCAGTGTGGAGAAACTTGGCTTGAAGGAAAAGATCATCAGTGGCAAAAGCGAGGCTGACTTAGGGTCACTCCAGCACAACCTCCTAATCATCGGACAGATTGTGCTGAGTTTAGTCATTGGACAAACAAAGATGGAGcttttatttagtgttgtggAAATTGACAGGATGTTCCTCTCACTTGGTACAAAGACGCTAAAGGCCCTGAAGTGTGTGATTGACACTGAAAAGCAGATGCTGGTTCTTGGAAAATCCGTAAGAGAGCAAGTCCATTTTGCTGGAAGACATGAAAATGAAGTCTCCATGGAATAAAAGGAATCTACACATTCATTTTCCTTCTGTTGGAAAGGCTGTGTTTTGAGAACCAAGCAAAACTGAAGTTTAGATGGATTTCAGTCTTTACTGGAATCACTGAATCTTACCACCAAGCCCTATCATGtaccagtctctctctctctacacacacacacacacacacacgcactgttTTTCACACACAATTGTACTACAGAGCTCATAATGAGCTAGATAGCTTTCCAAGCAGGACACTGCTGAATTATAAATAAAGGCCAAGTATCATTCAGCagacacacttacacagaaaACCATGTGTACGTAACACAAGCTTACACTAATTTGGCCAGTGACTAAGATTTACTAGAAATTGGACACCAGTtgattaacatatatatttattataatttcataTATGTCTTTTATATTTGGAAAACTGCATAGGAAAACTGAAATAGCATAGATCATTGATTATACAAATCAAATGCAACAGAGTAAGTTTTCATCTGATTGAGCTGCTTGTCAACCACCTTCACCATCAGAACTTCCGCTACAGAATTCTGTACATACTGATATTAACTATAGATGCACTGATACCTTTTTGCTTAACAACCAGCAGTAATACATACATAACAATACTAGCACCGTTTATTAAAGCCCAGATGTCTACCTCCCATTAGAATTCTGATGTTGCACAGTTTAACGCTGACAGTTTTACTGTCAAGTTTACATCCCACAAGCAGGTAGTGGCCTGTTTAGCTTTGGAAACCTGGATGTAGCCAgttgtgtgtacagtatgttttaCACGGTTTATAGCTCCTTTAATAAGGGTAATTTGTAGTACAACTTTAGGCCttatattctaatatatatatattatataaagtgtGTTATATAGTGATTCTTAACTAGTTCCTCTGGGCCGAACATTTGCTCTCATCCAGCTCCCAATACATCTGGACCACTGATCCGGTATCACTGCTCCATTATGTTGTGATTGGTTCAATCCTAGTAGTAGTGATTGCTGTTGTTTAAGTATTTATATGAACTTAAGCATTATGTTGTCCAGTAGGTTGCCTGCTTGCCTGCCTGATTTAACTGATCCCACGCATTATTCTGCttaatttaatgaattaaattaaattaatgtaattaattttatCACTGTTCAGTgtctctgaattaaaaaaaaatgaaaatatgttaCTTGATGCTGGAATATGGGTTTCCAATTTCTCCTAGTGAGGAAAAACTACATCACCCTGGTGGCAGATTAAATGTCCTGAATTGGCTGTCACATAACTAACACTAATCAGAGCCTTTGAGCAAGACTCCCAATGTTACACCTGCCTACCTGTGTAACATCATTCAAATGTTAGTCAATCTGGAAAAGAGTGTAAGCTAAATGATGTAAATGTAGAGGTAAGATATCTTGGAGCTATCTTGATTTTAGAAATAGGCTACCAACAATACTagctaatataattaataacgATCAGGGTATTTGTAGGTATGGGGATATTAAAGTAGACTTTTTAATATTACTCAGAGACAAAATAAAGAGCACGTTTACATTACAAATTGGCAAAAAGCCCTAATGTCAACACCAATATAACGTTTAATGcaaaacatatttacattaaatgtacaCTTTCGCATGCCTACACTGTACTAAAAATAGTACCCTGCACATGTGATGTGGGAAAATACcaaaatattacacatttattgtCTGTCATTTTTAAGACTTTTGAGAGGtgaatttttgtcattttatgacAATTTACGACCTTTTATCAGGTGAACAAATTTAACACCATTTAAGACACTAATATTTGTTACAATCATTATGAAGAAATCtgactctgtaaaaaaaactcttctttTAATGAATCATGTTACACCAGAATCCGAAACATAACGTTTCTATTTCAGTGCTTAAATATTTGTGATATAATTGCAGAAGTTTCCCTTTAATTATCAAGGTCAGTTAATACGTCTCAGCAGGGAAAACACTATAATGTTTAGTTTACTCAATGTAGCATACAGTAGGCTTACACCAAAGTAAACTAGTAAAATAACTGCTATTCACATGTATTGCCTTGATAGAACAAAGTTTACAAAAgtgttttgtatgtttataATCAGAATATTTCACTAGACAGTTGTATTGATCTTGTGATGTAGCctatttatgtttaataaaataaacatttatttaaacatttaaa

Function

symbol description
nrip3 Predicted to enable aspartic-type endopeptidase activity. Predicted to be involved in proteolysis.

NR:

description
PREDICTED: nuclear receptor-interacting protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249226.3 True 2905 mRNA 0.37 7 15298945 15304011

Neighbor

gene id symbol gene type direction distance location
rnf141 rnf141,LOC107672299,LOC107740332 coding upstream 143336 15150051 ~ 15155609 (+)
LOC103024643 NA coding upstream 150310 15144072 ~ 15148635 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding upstream 178640 15107363 ~ 15120305 (+)
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding upstream 468601 14818068 ~ 14830344 (+)
nts nts coding upstream 561218 14731792 ~ 14737727 (+)
LOC103021723 LOC108426425 coding downstream 17259 15321270 ~ 15331330 (+)
LOC111194727 NA coding downstream 29862 15333873 ~ 15335002 (+)
LOC103046975 NA coding downstream 38483 15342494 ~ 15347109 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding downstream 69338 15373349 ~ 15376164 (+)
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding downstream 178433 15482444 ~ 15501213 (+)
G158461 znf143,znf143b non-coding upstream 3553 15291441 ~ 15295392 (+)
G158472 znf143,znf143b,LOC107672322,LOC107583804 non-coding upstream 8218 15284904 ~ 15290727 (+)
G158467 wee1,LOC108264466,LOC107686254,LOC107580369,LOC107758614,LOC107740329,LOC107583885 non-coding upstream 18924 15277623 ~ 15280021 (+)
G158449 NA non-coding upstream 49570 15247619 ~ 15249375 (+)
LOC107197619 NA non-coding upstream 84952 15203184 ~ 15213993 (+)
G158475 NA non-coding downstream 798 15304809 ~ 15305463 (+)
G158477 NA non-coding downstream 11946 15315957 ~ 15319685 (+)
G158486 tbc1d15,LOC107686258,LOC107672302,LOC107749074,LOC107579928 non-coding downstream 59746 15363757 ~ 15367122 (+)
G158555 NA non-coding downstream 87648 15391659 ~ 15393165 (+)
G158565 zc3h18,LOC107672267 non-coding downstream 148205 15452216 ~ 15461006 (+)
LOC111194769 NA other upstream 161675 15128368 ~ 15137270 (+)
G158369 NA other upstream 248227 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1318920 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1556445 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 2557943 12735519 ~ 12741002 (+)
c18h11orf16 NA other downstream 2201 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 464044 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 467284 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 471413 15775424 ~ 15776166 (+)
G158779 NA other downstream 1075248 16379259 ~ 16379823 (+)

Expression


Co-expression Network