LOC103024643


Basic Information

Item Value
gene id LOC103024643
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15144072 ~ 15148635 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249235.3
cggttttattgttttcttcttttgccCTTTGCTCTGTGGGTCCATGGCCTCGAACAGAAGGTCTTTTAACAGATCATCCTCAACCTCCTGTTTCCCATTTCCCTCTGTCATTAGCTACGCTAGAGCACACCATGCAAACAAGACTTTAGTGTAGGAGCAATGAAGTCTAGAGTGGGTTTAACTCTGTGCTGtcttctctttctgctgcatTTCACAGTCAGTCTAGATCTCAGCCAGATTGAAGTTTACCCTGAAAATGGTGGAATCTCTGGAGTATTTATGGCCATGCTGAAGAAAAAATCAAACAGCTTCAATGCCACTACAGCCAGTGAGGTGTGCAGGTCTCTCAGTGTTAGAATAGCTACCAAAACTGAAGTGGAATCTGCACTGGCTGCCGGCTTAGAGACGTGCAGGTTTGGTTGGGTTGAGGAGAATATTGCGGTCGTTCCTCGAATAAACCCACATGAAAAGTGTGGCAAAAGCAAAGTTGGAATTGTTACTTGGTCTACTCCTCTAAGCAGGTTGTTTGATGTGTTTTGCTTCAATTCAACagGTCAAACCAAAGCAACAACAGCCACTACTCCAACAACGACAAACCCAATTAACACAAGTCCTCAAGCTAATTCAACCCCCCCACGGCCCATTCACTCTACAGCATCTAACAAAAActtcctctctctgtcctctcctGCCTCTTCCACATCCTCAACTTTCAGCACCTCTATGTCCTCCACATTCTTTCCCACTGTTGCAGCCACAAGAATCCCTCCATCACTGTCACTCTCAACTACTCAATCTCCACTCGCTACTTCCTCCTCTAATTCTACTGCATCCCTCTCTTCTATCAGTCTGTCCACACATCCGCTCACCTATACTTCCTCTTTAAGCAGCCAGTCTAATCAAACAGGACCGCTCGCACCGGACACGCCCACATCATCCTTTGGAGaGGTTCCAACAGCATGTGTTATCATTGCTGTCATGCTCATCTTGATGGCGGCAGCAGTAAACAAACACACCGTTTTCCACCATGGGTCAGACTCCGACACAAAGACATGGTTGAAACTGAGATGTGGAAGCACACAGAGCAGCAGTGTTCCAGCAAATATAAGGGGAAAAGCAGCTCTACAGGTGATATATCTCTCCTGCTGGAAGAAGACACAGAATCACCCAGTGTCCAGTGTCCTTCATGAGGGTGCTCAAGCAGTCAGTAAACATTTTTGGAGCTATTGGGGATTTGAAAGACTGTAAATATGCTGCTTGATATTTTTTAGAAAGATGCTTTGTATTATAGATGAGGGTGGTTCAGGTATCTGGAATAAAACAGTGGTAATAATGAATTTGGATGTTTTTACTGGGCATCATCAATGACAATTTCATACctgtgacaaaaaatatatatattggtagAATTGTACTACTGTAATatgaattaatgaaaaaataaacactacatTGTGAAAATG
>XM_007249236.3
gttttattgttttcttcttttgccCTTTGCTCTGTGGGTCCATGGCCTCGAACAGAAGGTCTTTTAACAGATCATCCTCAACCTCCTGTTTCCCATTTCCCTCTGTCATTAGCTACGCTAGAGCACACCATGCAAACAAGACTTTAGTGTAGGAGCAATGAAGTCTAGAGTGGGTTTAACTCTGTGCTGtcttctctttctgctgcatTTCACAGTCAGTCTAGATCTCAGCCAGATTGAAGTTTACCCTGAAAATGGTGGAATCTCTGGAGTATTTATGGCCATGCTGAAGAAAAAATCAAACAGCTTCAATGCCACTACAGCCAGTGAGGTGTGCAGGTCTCTCAGTGTTAGAATAGCTACCAAAACTGAAGTGGAATCTGCACTGGCTGCCGGCTTAGAGACGTGCAGGTTTGGTTGGGTTGAGGAGAATATTGCGGTCGTTCCTCGAATAAACCCACATGAAAAGTGTGGCAAAAGCAAAGTTGGAATTGTTACTTGGTCTACTCCTCTAAGCAGGTTGTTTGATGTGTTTTGCTTCAATTCAACagGTCAAACCAAAGCAACAACAGCCACTACTCCAACAACGACAAACCCAATTAACACAAGTCCTCAAGCTAATTCAACCCCCCCACGGCCCATTCACTCTACAGCATCTAACAAAAActtcctctctctgtcctctcctGCCTCTTCCACATCCTCAACTTTCAGCACCTCTATGTCCTCCACATTCTTTCCCACTGTTGCAGCCACAAGAATCCCTCCATCACTGTCACTCTCAACTACTCAATCTCCACTCGCTACTTCCTCCTCTAATTCTACTGCATCCCTCTCTTCTATCAGTCTGTCCACACATCCGCTCACCTATACTTCCTCTTTAAGCAGCCAGTCTAATCAAACAGGACCGCTCGCACCGGACACGCCCACATCATCCTTTGGAGaGGTTCCAACAGCATGTGTTATCATTGCTGTCATGCTCATCTTGATGGCGGCAGCAGGTGCAGTttggtattttaaaatTAAACAAACACACCGTTTTCCACCATGGGTCAGACTCCGACACAAAGACATGGTTGAAACTGAGATGTGGAAGCACACAGAGCAGCAGTGTTCCAGCAAATATAAGGGGAAAAGCAGCTCTACAGGTGATATATCTCTCCTGCTGGAAGAAGACACAGAATCACCCAGTGTCCAGTGTCCTTCATGAGGGTGCTCAAGCAGTCAGTAAACATTTTTGGAGCTATTGGGGATTTGAAAGACTGTAAATATGCTGCTTGATATTTTTTAGAAAGATGCTTTGTATTATAGATGAGGGTGGTTCAGGTATCTGGAATAAAACAGTGGTAATAATGAATTTGGATGTTTTTACTGGGCATCATCAATGACAATTTCATACctgtgacaaaaaatatatatattggtagAATTGTACTACTGTAATatgaattaatgaaaaaataaacactacatTGTGAAAATG

Function

GO: NA

KEGG:

id description
K19012 LYVE1; lymphatic vessel endothelial hyaluronan receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249235.3 False 1463 mRNA 0.44 6 15144072 15148635
XM_007249236.3 True 1483 mRNA 0.43 6 15144074 15148635

Neighbor

gene id symbol gene type direction distance location
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding upstream 23767 15107363 ~ 15120305 (+)
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding upstream 313728 14818068 ~ 14830344 (+)
nts nts coding upstream 406345 14731792 ~ 14737727 (+)
alx1 alx1 coding upstream 500573 14636792 ~ 14643499 (+)
lrriq1 NA coding upstream 511880 14588458 ~ 14632192 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding downstream 1416 15150051 ~ 15155609 (+)
nrip3 nrip3 coding downstream 150310 15298945 ~ 15304011 (+)
LOC103021723 LOC108426425 coding downstream 172635 15321270 ~ 15331330 (+)
LOC111194727 NA coding downstream 185238 15333873 ~ 15335002 (+)
LOC103046975 NA coding downstream 193859 15342494 ~ 15347109 (+)
G158429 NA non-coding upstream 1600 15142172 ~ 15142472 (+)
G158419 NA non-coding upstream 19078 15124789 ~ 15124994 (+)
G158417 NA non-coding upstream 20403 15123138 ~ 15123669 (+)
G158381 NA non-coding upstream 73663 15069786 ~ 15070409 (+)
G158359 NA non-coding upstream 135989 15007505 ~ 15008083 (+)
LOC107197619 NA non-coding downstream 54549 15203184 ~ 15213993 (+)
G158449 NA non-coding downstream 98984 15247619 ~ 15249375 (+)
G158467 wee1,LOC108264466,LOC107686254,LOC107580369,LOC107758614,LOC107740329,LOC107583885 non-coding downstream 128988 15277623 ~ 15280021 (+)
G158472 znf143,znf143b,LOC107672322,LOC107583804 non-coding downstream 136269 15284904 ~ 15290727 (+)
G158461 znf143,znf143b non-coding downstream 142806 15291441 ~ 15295392 (+)
LOC111194769 NA other upstream 6802 15128368 ~ 15137270 (+)
G158369 NA other upstream 93354 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1164047 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1401572 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 2403070 12735519 ~ 12741002 (+)
c18h11orf16 NA other downstream 157577 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 619420 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 622660 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 626789 15775424 ~ 15776166 (+)
G158779 NA other downstream 1230624 16379259 ~ 16379823 (+)

Expression


Co-expression Network