rnf141 (rnf141,LOC107672299,LOC107740332)


Basic Information

Item Value
gene id rnf141
gene name rnf141,LOC107672299,LOC107740332
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15150051 ~ 15155609 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249238.3
TTGCTTATGAAGTAGTCAGCTCGGTGGCTAAGCTAACGGTACACTGCGCTCGTCTGAGAGCGGTTTTACTTCCAGTGCTTTTATTGGATATCTCTCTCATGTCAGCAGGGCGTTGTGTGCTGAATGAGCTCTAGTGTTCTCTTCGTGTGGGTCTCCACGTGGAGCTGAGATGGGCCAACAGATCTCTGGCCAGGCGGTGGTGAGCAGGCTTCCTGAGAAGCTGATCAAGCACGCCGGACTAGTGCGGGACAGCGGCTACCTCACCTATGAGGAGTTCTTGGGCCGAGTGGCAGAGCTGAATGAGGTAACTGCAAAGCTGGCTGCTGGCCAACAGAAGCATCTCCTCTTCGAAGTTCAGCCTGGATCTGATGCGTCTGCCCTGTGGAAAGTGGCTGTGAGAATAGTCTGCACTAAGATTAACAAAGAGGATGGGATGGTGGAGGCCTCACGCATTATGAACCTGTACCAGTTTAACCAGCTCTACAAAGACATTACCAGCCAAGCAGCTGAAGTTCTTTCAGGAGAGGGCGCTGCTGAGTGCTCGTCTGGGCAGCTTTCCTCTGCAGAGTCCTGTCAGGCCAGTATGTGGATGGGCAgGGTGAAACAGCTCACAGATGAGGAAGAGTGCTGTATCTGTATGGATGGGAAAGCGGATCTTATTCTGCCGTGTGCTCACAGCTTCTGCCAGAAATGCATTGATAGGTGGAGCGGTCAAAGTCGAAACTGTCCCATCTGCCGGATTCAGGTAACCGCTGCCAATGAATCATGGGTAATGTCTGATGCGCCCACAGAGGAGGATATAGCCGGCTACATTCTCAATCTCGCTGATGAGGCTGGCCATCCTCACAGACCCTAAACTGAACCACTACGTCACTTAATACCTGCTTACTTAAATTATTACACTTATCTTTTGACTGTAAAACAAGCTGTTTTAAATGGTGAGGAGGTGAGAATAGCTTGATCTATTCCTTTATCGCTGGAGGCAATAACCCCTTGTTGTTGTCCTTACTTTTTTGAGTTCTGAAACTGTGAAAAGGCAATACATAGCATTTCACTGAAAACACTGCTGTTTTCTGATTGAccacctgcttttttttttttttttttttttttttttaattcttaacaCATTGCGCTTAAGTAGTAATTTTGTATGAATTAGAAATATCAAACCTTCAGTTTACTTTTCAGGAGAGTTGAGACAAGTGGAGACCACCATTCTTTACATTCAGTGTTTAAATCTTCACAGAGAGAGCTTTGACACAATTTCTGAATACTGAAGTTTCCTCATAACATAGTAGTTTAATGGATTTTGATTAAGTGCTTAAAATGACACTGTTCCTATGGTGTCATTGTGTTGCTACTGAAGTGCAATATTGCTCAAACTGTAATCTGGGCTTTTTCTTATAGTTCAGTTAATACAATAACAattgaaaatgcattttatgaaGAAGCTATGCTGGTTTAATGGTtagtctgtaaaataaaaattggctACTGAGACTATTTTACGAACAGATTATCTGGGCCAGATTCACATAAGCTTTCCTAAGggataaaacatatataaatgcttaaataaacGCTAAGAAGATCATTCTTCAGAAGTTCTGGAATTAAGTCTTAAAAAGTTGTCAAATATTCTTTTAATCTCTCTTAGTTTGTTCAAGGTTTCCTTTAAACAGTAATTTGGGCAGTTTTCCCAGAgaaggattaagcctagttgtagactgttttacttttaatgaaacaattctatttaaattgccgtgtagtccaagactaggcttaatccctgtttgcGGGAAGTGCCCCATAGTAtgttatcattatcatcatcatttattATGCAAGACTTTTTTCATGatctaatatttattaaatcctTGCAAAAtaggaaaaacagaaacagtcctcaatattaattacattaaattagacATTAAAATACTGCAGTCTAGGAAATGTatgagaaaacagaaaaatcttAAGactcaaacaaaaatatatatattgtcatattttttttttctttcttaagaCACTTTTGTGAATTTGGCCATTGGTGATTTTACCTGTATTTATACAGTACTGCACTCACTTTCTGTGGCATTAActtccttttttaaattgttccaTAATTTACAGGTAATTTACAAACAGCTGATcgaatgtttctttttttgggttggatttgttttttttttggtatgtaTGTGTGGCCTGTGTAATAACATTAACTATAATatattaagaataaataaatgtatatttttcttgACATCCTGTTCATAATCTGGTGTTAATCCTGAACTTTGTAAATGTCTAATCACTTGCAGCTCTATAGACTTTTTGATGTTGTTGAACTACTACTTCCACCAAGTTTCAGTGCTCAGCTGAATAAATAAGGTACCACTTTTTGTA
>XM_007249239.2
GAGAAGCTGATCAAGCACGCCGGACTAGTGCGGGACAGCGGCTACCTCACCTATGAGGAGTTCTTGGGCCGAGTGGCAGAGCTGAATGAGAACTGCAAAGCTGGCTGCTGGCCAACAGAAGCATCTCCTCTTCGAAGTTCAGCCTGGATCTGATGCGTCTGCCCTGTGGAAAGTGGCTGTGAGAATAGTCTGCACTAAGATTAACAAAGAGGATGGGATGGTGGAGGCCTCACGCATTATGAACCTGTACCAGTTTAACCAGCTCTACAAAGACATTACCAGCCAAGCAGCTGAAGTTCTTTCAGGAGAGGGCGCTGCTGAGTGCTCGTCTGGGCAGCTTTCCTCTGCAGAGTCCTGTCAGGCCAGTATGTGGATGGGCAgGGTGAAACAGCTCACAGATGAGGAAGAGTGCTGTATCTGTATGGATGGGAAAGCGGATCTTATTCTGCCGTGTGCTCACAGCTTCTGCCAGAAATGCATTGATAGGTGGAGCGGTCAAAGTCGAAACTGTCCCATCTGCCGGATTCAGGTAACCGCTGCCAATGAATCATGGGTAATGTCTGATGCGCCCACAGAGGAGGATATAGCCGGCTACATTCTCAATCTCGCTGATGAGGCTGGCCATCCTCACAGACCCTAAACTGAACCACTACGTCACTTAATACCTGCTTACTTAAATTATTACACTTATCTTTTGACTGTAAAACAAGCTGTTTTAAATGGTGAGGAGGTGAGAATAGCTTGATCTATTCCTTTATCGCTGGAGGCAATAACCCCTTGTTGTTGTCCTTACTTTTTTGAGTTCTGAAACTGTGAAAAGGCAATACATAGCATTTCACTGAAAACACTGCTGTTTTCTGATTGAccacctgcttttttttttttttttttttttttttttaattcttaacaCATTGCGCTTAAGTAGTAATTTTGTATGAATTAGAAATATCAAACCTTCAGTTTACTTTTCAGGAGAGTTGAGACAAGTGGAGACCACCATTCTTTACATTCAGTGTTTAAATCTTCACAGAGAGAGCTTTGACACAATTTCTGAATACTGAAGTTTCCTCATAACATAGTAGTTTAATGGATTTTGATTAAGTGCTTAAAATGACACTGTTCCTATGGTGTCATTGTGTTGCTACTGAAGTGCAATATTGCTCAAACTGTAATCTGGGCTTTTTCTTATAGTTCAGTTAATACAATAACAattgaaaatgcattttatgaaGAAGCTATGCTGGTTTAATGGTtagtctgtaaaataaaaattggctACTGAGACTATTTTACGAACAGATTATCTGGGCCAGATTCACATAAGCTTTCCTAAGggataaaacatatataaatgcttaaataaacGCTAAGAAGATCATTCTTCAGAAGTTCTGGAATTAAGTCTTAAAAAGTTGTCAAATATTCTTTTAATCTCTCTTAGTTTGTTCAAGGTTTCCTTTAAACAGTAATTTGGGCAGTTTTCCCAGAgaaggattaagcctagttgtagactgttttacttttaatgaaacaattctatttaaattgccgtgtagtccaagactaggcttaatccctgtttgcGGGAAGTGCCCCATAGTAtgttatcattatcatcatcatttattATGCAAGACTTTTTTCATGatctaatatttattaaatcctTGCAAAAtaggaaaaacagaaacagtcctcaatattaattacattaaattagacATTAAAATACTGCAGTCTAGGAAATGTatgagaaaacagaaaaatcttAAGactcaaacaaaaatatatatattgtcatattttttttttctttcttaagaCACTTTTGTGAATTTGGCCATTGGTGATTTTACCTGTATTTATACAGTACTGCACTCACTTTCTGTGGCATTAActtccttttttaaattgttccaTAATTTACAGGTAATTTACAAACAGCTGATcgaatgtttctttttttgggttggatttgttttttttttggtatgtaTGTGTGGCCTGTGTAATAACATTAACTATAATatattaagaataaataaatgtatatttttcttgACATCCTGTTCATAATCTGGTGTTAATCCTGAACTTTGTAAATGTCTAATCACTTGCAGCTCTATAGACTTTTTGATGTTGTTGAACTACTACTTCCACCAAGTTTCAGTGCTCAGCTGAATAAATAAGGTACCACTTTTTGTA

Function

symbol description
rnf141 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein autoubiquitination. Orthologous to human RNF141 (ring finger protein 141).

NR:

description
PREDICTED: RING finger protein 141-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249238.3 True 2424 mRNA 0.39 6 15150051 15155609
XM_007249239.2 False 2208 mRNA 0.37 5 15151779 15155609

Neighbor

gene id symbol gene type direction distance location
LOC103024643 NA coding upstream 1416 15144072 ~ 15148635 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding upstream 29746 15107363 ~ 15120305 (+)
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding upstream 319707 14818068 ~ 14830344 (+)
nts nts coding upstream 412324 14731792 ~ 14737727 (+)
alx1 alx1 coding upstream 506552 14636792 ~ 14643499 (+)
nrip3 nrip3 coding downstream 143336 15298945 ~ 15304011 (+)
LOC103021723 LOC108426425 coding downstream 165661 15321270 ~ 15331330 (+)
LOC111194727 NA coding downstream 178264 15333873 ~ 15335002 (+)
LOC103046975 NA coding downstream 186885 15342494 ~ 15347109 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding downstream 217740 15373349 ~ 15376164 (+)
G158429 NA non-coding upstream 7579 15142172 ~ 15142472 (+)
G158419 NA non-coding upstream 25057 15124789 ~ 15124994 (+)
G158417 NA non-coding upstream 26382 15123138 ~ 15123669 (+)
G158381 NA non-coding upstream 79642 15069786 ~ 15070409 (+)
G158359 NA non-coding upstream 141968 15007505 ~ 15008083 (+)
LOC107197619 NA non-coding downstream 47575 15203184 ~ 15213993 (+)
G158449 NA non-coding downstream 92010 15247619 ~ 15249375 (+)
G158467 wee1,LOC108264466,LOC107686254,LOC107580369,LOC107758614,LOC107740329,LOC107583885 non-coding downstream 122014 15277623 ~ 15280021 (+)
G158472 znf143,znf143b,LOC107672322,LOC107583804 non-coding downstream 129295 15284904 ~ 15290727 (+)
G158461 znf143,znf143b non-coding downstream 135832 15291441 ~ 15295392 (+)
LOC111194769 NA other upstream 12781 15128368 ~ 15137270 (+)
G158369 NA other upstream 99333 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1170026 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1407551 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 2409049 12735519 ~ 12741002 (+)
c18h11orf16 NA other downstream 150603 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 612446 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 615686 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 619815 15775424 ~ 15776166 (+)
G158779 NA other downstream 1223650 16379259 ~ 16379823 (+)

Expression


Co-expression Network