nts (nts)


Basic Information

Item Value
gene id nts
gene name nts
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14731792 ~ 14737727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249246.3
TATATACTGGGGGAATGGAGCCCATCAGTCCTCAGAACAAGCCGAGAGAACGCAGAGCGACAGGCTGGATAAGAAACCAAGACCAGGGACCACTTTCTCTCCCAACTcccatctccatctctctttctctttccctcactctttctctgtctccatCATCCTACTTCactctctccactctttctctcccttcttGACCTTTAGCCTTATGGACTCGGGCCTAGCCTAAACTTGTAAGGTCTGCAGGATTGTTAGCAAGATGCAGGTGACCAAGATGCAGTTAACCAGTGTGGTGCTCCTCTGTTTGATCTGCAGCGGATTCAGCTCAGATGTTGATGAAGCAAAGGATGCCATGGAGGAGGAGATGCTGAGCAGTCTCTACACCTCAGAGgtaaaGCAGAGCAGACACAGCGCCCCCCTGTGGCAGCTGCCTCTGCAGAACATGTGCAGGATGCTGGGGAGCATCAGTGAGTCCTGGCAGGACTGGACCGCTGAGGAGATTCAAACGGCCTACGAGCAGAGACTGAGCACGGCCCTCAGCCAGACCCTGCAGGACCTGTACAACCTCCAGTCCCTCTGCAGAATACTGCACCCCcgagagcttCACTATGGAGAAGAATACTTGGAACTGGATCAGGACAGCGAGAACCCGCTGAAAAGAAAATCTCCGTACATTCTAAAGAGGCAGCTGCACACCAACAAAGCCAGGAGACCGTACATTCTGAAGCGAAGCTCATTTTACTGACCCGTATAtccactaataaaataaaagacagtTTACACTCTGAGAATACAGTATGTGGCTATTTTCACTAAGACCATCAGTAATAGAGCATTTCTGTTCTacattttttgcttttgctttagcACTTTGTCCCTCCAAATACCTGCCCCATGCTATCTTTTGTTAAGGGACAGTCTATGTAAATAAAATCAGCAAgcaaatactgtatactgtttctttgaaagattattatttttgttcaatgtatatttctttttattctgaTGTAATTAAATGACACGTCTTTCAACTA

Function

symbol description
nts Predicted to enable neuropeptide hormone activity. Predicted to be located in extracellular region and transport vesicle. Is expressed in GABAergic neurons and diencephalon. Orthologous to human NTS (neurotensin).

NR:

description
neurotensin/neuromedin N-like

GO: NA

KEGG:

id description
K05235 NTS; neurotensin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249246.3 True 1037 mRNA 0.46 4 14731792 14737727

Neighbor

gene id symbol gene type direction distance location
alx1 alx1 coding upstream 88293 14636792 ~ 14643499 (+)
lrriq1 NA coding upstream 99600 14588458 ~ 14632192 (+)
LOC103026424 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 174529 14546807 ~ 14557263 (+)
bhlhe41 bhlhe41 coding upstream 192428 14533728 ~ 14539364 (+)
LOC103025600 itpr2 coding upstream 217646 14405581 ~ 14514146 (+)
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding downstream 80341 14818068 ~ 14830344 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding downstream 369636 15107363 ~ 15120305 (+)
LOC103024643 NA coding downstream 406345 15144072 ~ 15148635 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding downstream 412324 15150051 ~ 15155609 (+)
nrip3 nrip3 coding downstream 561218 15298945 ~ 15304011 (+)
G158238 NA non-coding upstream 169661 14560650 ~ 14562131 (+)
G158093 ppfibp1 non-coding upstream 541750 14168959 ~ 14190042 (+)
G158086 endouc,LOC108425714,LOC107749311,LOC107686338,LOC107672228 non-coding upstream 574759 14151418 ~ 14157033 (+)
G158085 NA non-coding upstream 581303 14149486 ~ 14150489 (+)
G158068 NA non-coding upstream 614949 14116319 ~ 14116843 (+)
G158335 NA non-coding downstream 173231 14910958 ~ 14919932 (+)
G158357 NA non-coding downstream 241016 14978743 ~ 14980092 (+)
G158359 NA non-coding downstream 269778 15007505 ~ 15008083 (+)
G158381 NA non-coding downstream 332059 15069786 ~ 15070409 (+)
G158417 NA non-coding downstream 385411 15123138 ~ 15123669 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 751767 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 989292 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 1990790 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 2365022 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 3588321 11031065 ~ 11143471 (+)
G158369 NA other downstream 312495 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 390641 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 568485 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 1030328 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 1033568 15771295 ~ 15771945 (+)

Expression


Co-expression Network