alx1 (alx1)


Basic Information

Item Value
gene id alx1
gene name alx1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14636792 ~ 14643499 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249249.3
CTTATAAGGTCCCTTTAAGACAAGACTAATGAACCGCGTGCGCAAATCAGCGGGCCACAGCACTgccaaacagacagacagacacctATGGTGTGCTTTAAGGAGcctggagagggagagagacatagagcaagacaggcagagagagagcgagacgaGGTCCGCGgacaatgatgatgatggaatACATGACGGACAAGTTCCCCATGAAGAGTGAAGCGATTAAGGGCAGTGAGTACTACATGGGCTCGGGCAGCACTCTGGAGCAGGTGATGGAGAGCCTGGAGAGTGTGCAGTACTACGACAAGACTTCACCTAAGTGTGTGCACTCTCACTCCTACACCCTGCAGAACAGCGAGCAGCACAGCAGAATGGACAGGGCCTCGCCATGTGACAACCAaagcaATCCCGCGTACCGGGCGGCCGAGGCCGAGGACGAAAGCGCGCGCACCGCCGCCGAAAGCCGCGAGCGCAGCGACGGAGACGAGCTCGCGGAGAAGGCGGACAGTAACGTCACCAGCAGCAAAAAGCGGAGACACCGGACCACCTTCACCAGCGCGCAGCTCGAGGAGCTGGAGAAGGTCTTCCAGAAAACTCACTACCCAGATGTGTACGTGAGAGAACAGCTGGCCATGAGGACAGAGCTGACCGAGGCCAGAGTGCAGGTTTGGTTCCAGAACCGCAGGGCTAAGTGGAGGAAGCGAGAGCGGTACGGACACCTGCAGCAACCCAAAGGCCCTTACAGCAACACATACGAGCTCACAGCCTTACCCAGAACAGACACCTACTCACAGATTCCCAACAACCTGTGGACGGCTCAGTCACCCAGTGGCTCCATGGTGTCGTCCTGCATGATCCCACGAGGTTCCCCTCCTTGTGTGCCCTCCCCGTACCCCCACTCTCCACGAGCTCCAGAGCACGGTTACGTGGGCTTCCCAAACCACCAACAAAACCAGTTTGGCGTCAATCACGTCTCCCTCAACAACTTCTTTGCTGATTCACTCTTGGCTCCAGCACCCAGTGGACATGCAGCATTTGAGAGCAAGCCTGAATTTGAGCGGCGGTCCTCCAGCATCGCTGTCCTGAGGATGAAGGCAAAAGAGCACACGGCTAACATTTCCTGGGCTATGTGAGccactctctcagactcttaCACATAGCAATAATACAAGGAGTTTAACCTTAAAGCATTGATAGGGCTGATGGTCTTGAACTCTTGAATGactgaaatataaaatgatttctTTAAAGAGCTTCAAAATTGCAGACAGCACCATTGTATCATTCCTTCACATGCTGAAATACCGAAATTAGAAGTTGGCTATAGAATAGAAGTTGGTTATAGTTTAAAAAGGAGTCTCTTTAGGAATCAATAGTGTGCCTTGTTATTCCTGATGCACTTACAATGATGTGAAAACAGTGGCACAGGGAGCGTTAGGAGATAAACAGCATTCTGTTCTCAGGACTTAGAGCAGAGGTGATGTCTCTGATATACTAacattttgtttgtgtgctttgaaGCAAAGCTGTGTACAACTCAAACCTGTGGCTGGCTTAAGCTCTGCCACAATCGGAGGATCATTTCATCCTCTGTGATAacattatttgaataaaatttatttcattaaa

Function

symbol description
alx1 Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within embryonic cranial skeleton morphogenesis and neural crest cell migration. Predicted to be located in nucleus. Is expressed in head; head mesenchyme; neural crest; pectoral fin bud; and presumptive cephalic mesoderm. Orthologous to human ALX1 (ALX homeobox 1).

NR:

description
ALX homeobox protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001755 neural crest cell migration biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09334 ALX1, CART1; ALX homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249249.3 True 1629 mRNA 0.51 4 14636792 14643499

Neighbor

gene id symbol gene type direction distance location
lrriq1 NA coding upstream 4600 14588458 ~ 14632192 (+)
LOC103026424 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 79529 14546807 ~ 14557263 (+)
bhlhe41 bhlhe41 coding upstream 97428 14533728 ~ 14539364 (+)
LOC103025600 itpr2 coding upstream 122646 14405581 ~ 14514146 (+)
eea1 eea1 coding upstream 261989 14343739 ~ 14374803 (+)
nts nts coding downstream 88293 14731792 ~ 14737727 (+)
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding downstream 174569 14818068 ~ 14830344 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding downstream 463864 15107363 ~ 15120305 (+)
LOC103024643 NA coding downstream 500573 15144072 ~ 15148635 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding downstream 506552 15150051 ~ 15155609 (+)
G158238 NA non-coding upstream 74661 14560650 ~ 14562131 (+)
G158093 ppfibp1 non-coding upstream 446750 14168959 ~ 14190042 (+)
G158086 endouc,LOC108425714,LOC107749311,LOC107686338,LOC107672228 non-coding upstream 479759 14151418 ~ 14157033 (+)
G158085 NA non-coding upstream 486303 14149486 ~ 14150489 (+)
G158068 NA non-coding upstream 519949 14116319 ~ 14116843 (+)
G158335 NA non-coding downstream 267459 14910958 ~ 14919932 (+)
G158357 NA non-coding downstream 335244 14978743 ~ 14980092 (+)
G158359 NA non-coding downstream 364006 15007505 ~ 15008083 (+)
G158381 NA non-coding downstream 426287 15069786 ~ 15070409 (+)
G158417 NA non-coding downstream 479639 15123138 ~ 15123669 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 656767 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 894292 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 1895790 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 2270022 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 3493321 11031065 ~ 11143471 (+)
G158369 NA other downstream 406723 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 484869 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 662713 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 1124556 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 1127796 15771295 ~ 15771945 (+)

Expression


Co-expression Network