LOC103031502 (eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577)


Basic Information

Item Value
gene id LOC103031502
gene name eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15107363 ~ 15120305 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249257.2
ATGAAAGCGGCTGGTGTTACAAGAAGTAAAAAGAAGTTGCCAGGAGAGTTTCACTGCCAGCGCCGGCTGGACCTCGGCGAGCAGAGAGACTCAGCAGAAAATGGCGTCGCGGGGAAGACGCGCTTTAACGGTGCCGGCTTTGTGCTGGGCAGCGcccGGTGTTCCCCACCCCACCCTTTGATTCTTATTCTTTTAAAGATTCTTCGTTGTCAAGCCGCCAAAGTGGAGAGTGTGATTGCAGAAGGGGGTGCTTCTCGTTTCAGTGCTTCTTCGGGCGGAGGAGGAGGTAGGGGTGCACCTCAGCACTTTCCCAAGACTGCCGGCAACAGCGAGTTCCTGGGGAAAACCCCAGGGCCTAGCGTTCAGAGATGGGTTCCTTCACGAAGCACTAGACGAGATGTCGACTCCTCCaatgaaaaagaacatcatgatGCAATATTTAGGAAAGTAAGAGGGATACTAAATAAACTGACCCCTGAAAAGTTTGACAAGCTATGCCTTGAGCTCCTCAACGTGGGTGTAGATTCTAAGCTTGTCCTCAAGGGAGTCATCTTGCTGATCGTAGACAAAGCATTAGAAGAGCCAAAATACAGCTCACTCTATGCCCAGCTATGTCTGCGTTTGGCAGAGGATGCACCAAACTTTGACAGCCCACCTGAGATTCAATCCAATCAAAAGCAGAGCACAACTTTCAGAAGACTCCTGATCACCAAACTCCAAGATGAATTTGAGAACCGCACCAAAAATGTTGAAAtcTACGAAAAAAAGGAAAGCCCTCTTACTTCTGAAGAAGAGGAGCAACGTGCCATTGCCAAGATCAAGATGCTTGGGAACATTAAATTCATTGGGGAACTTGGCAAACTTGACCTCATCCATGAATCTATCCTTCATAAGTGCATCAAAACActtttggaaaagaaaaagaggatcCAACTCAAGGATATGGGGGAGGATTTGGAGTGCCTCTGTCAGATAATGAGAACTGTCGGGCCTAGACTTGATCATGAAAAAGCCAAGTCTTTAATGGATCAGTACTTTGGCCGTATGCGATCCTTAATGAACAACAAGGACTTGCCAGCCAGGATTCGTTTCCTGCTGCAAGACACGGTGGAGCTGCGAGAGAACAATTGGGTTCCTCGTAAGGCCTTTATTGACAACGGACCAAAGACGATTAACCAGATTCGTCAGGATGCAGTGAAGGATTTGGGTGTCTTCATTCCACCCATGTACCAAGGAATAAGAATGGACTTCTTTCTGGAAGGGCCCTTTATGCCAGCCAGAATGAAACTGGACAGAGAGACTCTTGGAGGATTGGCTGACATGTTTGGACAGATGCCAGGCAGTGGAATAGGAACTGGTCCAGGAGTGATCCAGGACAGATTCTCCCCCACTTTGGGACGCCATCGCACCAACCCACTCTTTAACGGACACATGGCTAACCCACCACAGTCACAGTTCGACTTGGCTATCAAGCCTTTCATGAAATGTAATCAGGTACAGAATCAGCATTTTCACAACCAAAATCAGAACCATTCCACCCAGCAGCAAGTTCAGTCCAAGGATATGCCACCACGCTTCAAGAAGGGGCAGCTCAATGCAGATGAGATCAGTCTGAGACCGGCTCAGTCTTTCCTGTTGAATAAGAATCAAGTGCCAAAGCTGCAGCCTCAGATCCCCAACATGATGCCACCCAGCGCTCAGCCTCCCCGCACTCAGACTCCACCCCTTGGACAGCCTCCACAGCTTGGTCTGAAAACCAATCCTCCCCTGATCCAGGAGAAACCTCAGAAGACCAGCAAGAAACCTGCACCTTCCAAGGAGGAATTGCTCAAAATGACAGAAACCGTAGTGACTGAGTACCTGAACAGTAAGAACTTGGAGGATGCGGTCAATGGGGTGAGAGAGATGAGGGCTCCAAAACATTTTCTGTCGGAGATGTTGAGTAAGATCATCCTGTGTTCTCTGGAGAGGTCTGATGATGATAAGGAACAGGCCAGTACCCTTATTCACGCCCTGCGTACTGAGGGACTTGTATCTGGAGAGAACTTCATGCAGGCTCTGCTGAACGTGCTGGACCAGTGTCCCAAGATTGAGGTGGACATCCCACTGGTGAAATCTTACTTGGCCCAGTTTGCTGCGAGGGCTGTCATCACAGAGTTAGTCAGCATTGCAGAGTTGGCTCACCCTCTGGAGAACGGCACCCACTTCCCCCTTTTCCTGCTGTGCCTGCAACAAGCATCCAAGCTGAAGGACCGTGAGTGGCTTGCTGACCTTTTCCAACAGAGCAAGGTCAACATGCAGAAGATGCTCCCAGaaattgaCCAGAATAAGGATCGTATGTTGGAGATTCTGGAGGGGAAGGGCTTGAGCTTCCTTTTTCCCCTACTGAAACTAGAGAAGGAActtctgaagcagataaaagctGACCCTGCCCCACAAAGCATTTACAAGTGGATCAAGGATAACATCTCTCCCAAACTCCACACTGATAAGGGTTTCATCAACATTCTGATGACCAGcTTCCTGCAGTTCATTTCAGCTGAGTTGTGTCTGTCTGAGAGTGAGGAGAATCTGAGTGCCCCCTCTAAAGAGCAGTTGGATCAGGAGAAGCAGCTGCTGCTGGCTTTCAAGCCAGTCATGCAGAAGTTCCTCCATGACCACACTGACCTGCAAGTCAGTGCCCTGTATGCGCTGCAGGTGCACTGCAACACATACGCCTTCCCCAAAGGCATGTTGCTGCGCTATTTTGTCAACTTTTATGACATGGAGATCATTGAAGAAGAGGCCTTCCTTGCATGGAAAGAAGATATTACCCAAGAATTCCCTGGAAAAGGAAAAGCCTTGTTTCAGGTGAACCAGTGGCTGACCTGGTTGGAGACAGCTGAGGAAGAGGAATCTGAGGAGGAGGGTGACTGAGAAACCAGCCAAAGCCTAATAACACAAGTCCCAGAGTAGTCTGCTAGATAGCATAGTGCTCCTTCTCTCATTACCCAACTGCAGTAACACAAACTCAGTCACCTGCATATCACACTCTGCTGCTAGACCCACATACCCACATCACATTACTGTAATCTTTTGTTTTATGTCTTTGCTAGCATCTCGAGGCTACTTTAGCTCTATCATGTTGCATTTAGGGTAATTAGTCCTGATTATACTGTAAATTTCATCTGCTAATTTGGAAAAGGTTTCACTCCACCACTATAATTCTTGCGTTACTCGTGATTTTCTTGACTTGGTTGCAGTCATTTTTTAAGATCTAGGGTGATGAATGTTTGTAAAGCAACACTGAGCTGAGTTTGTGGTTGAGGGGCTGTCTTTCTGACTGTGGGCAGTTCTGCAAGAGTGTTTCATCAGTTTTTAGTGGGATGGTTGCAGTGTCTGTTATTTCATCAACATTCATGATCTACAAAATCCACAGAAATGTACTTGATGGTTTTTGTTGCTGTAGTGTTTTAACAGCTGTCTGTTTCTACCTCCTGAATGGGCTTTATAGTGCAAGGTAACATAGAGCTACATTATTGAAGAGAATTAAGATCCAGAGTATTTGCTATCTAGAACATCTTGCTTAACACACTACTTCATACCAAGATTATTAGTTAAGCCTTTAAAAGTGCTTTTGCAGGAAAACTCTTGAttgttggaaaaataaaataaatcaacatgAAGGTGTCTGGTAAAGCCCCCTGCTTTCTAATCCTTATTTCCTTAACATTCTGACATTTAGTATGTCTGATTTGGACTGTACTGAGGCATTAGTGTAAGACCCTAGAACAAATCTAAATACAAGGagattattttagccattttgaAACCAGTCAACGAAATTCAGTTGAAAAGATAAATCCCCTTCCTGCTTTTTGATATTTGAAGAAAATTTAAAGGCTTTTGCCCTTGTCAATAAGCAATGCACAGACCACCTGTTATTGGCAAGTGTTTCAATTTATTTGCGAGAATTGAGTTGCATTGGCTTCGCttcagttttctttacttttcgGAGGTGTCTGCATCCGTCTTCTTGTAAGGTTCTAAATGGCTCACAATCATGTCATAAGGTTGTTTTAGTGCTCTGTATCCTACACCactgttgcttcattttaagtaaagaaacaCCTAATCACCTAA

Function

symbol description
eif4g2b Predicted to enable mRNA binding activity and translation initiation factor activity. Acts upstream of or within mesoderm development. Predicted to be part of eukaryotic translation initiation factor 4F complex. Orthologous to human EIF4G2 (eukaryotic translation initiation factor 4 gamma 2).

NR:

description
PREDICTED: eukaryotic translation initiation factor 4 gamma 2-like

GO:

id name namespace
GO:0007498 mesoderm development biological_process
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03260 EIF4G; translation initiation factor 4G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249257.2 True 4122 mRNA 0.46 22 15107363 15120305

Neighbor

gene id symbol gene type direction distance location
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding upstream 277019 14818068 ~ 14830344 (+)
nts nts coding upstream 369636 14731792 ~ 14737727 (+)
alx1 alx1 coding upstream 463864 14636792 ~ 14643499 (+)
lrriq1 NA coding upstream 475171 14588458 ~ 14632192 (+)
LOC103026424 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 550100 14546807 ~ 14557263 (+)
LOC103024643 NA coding downstream 23767 15144072 ~ 15148635 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding downstream 29746 15150051 ~ 15155609 (+)
nrip3 nrip3 coding downstream 178640 15298945 ~ 15304011 (+)
LOC103021723 LOC108426425 coding downstream 200965 15321270 ~ 15331330 (+)
LOC111194727 NA coding downstream 213568 15333873 ~ 15335002 (+)
G158381 NA non-coding upstream 36954 15069786 ~ 15070409 (+)
G158359 NA non-coding upstream 99280 15007505 ~ 15008083 (+)
G158357 NA non-coding upstream 127271 14978743 ~ 14980092 (+)
G158335 NA non-coding upstream 187431 14910958 ~ 14919932 (+)
G158238 NA non-coding upstream 545232 14560650 ~ 14562131 (+)
G158417 NA non-coding downstream 2833 15123138 ~ 15123669 (+)
G158419 NA non-coding downstream 4484 15124789 ~ 15124994 (+)
G158429 NA non-coding downstream 21867 15142172 ~ 15142472 (+)
LOC107197619 NA non-coding downstream 82879 15203184 ~ 15213993 (+)
G158449 NA non-coding downstream 127314 15247619 ~ 15249375 (+)
G158369 NA other upstream 56645 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1127338 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1364863 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 2366361 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 2740593 12340006 ~ 12366770 (+)
LOC111194769 NA other downstream 8063 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 185907 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 647750 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 650990 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 655119 15775424 ~ 15776166 (+)

Expression


Co-expression Network