mlycd (mlycd,LOC107583902,LOC107722462)


Basic Information

Item Value
gene id mlycd
gene name mlycd,LOC107583902,LOC107722462
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 12783799 ~ 12800375 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250515.3
GAAACTGAGCAGTGCTGAAAGTCGCGCTGTCTCTTTAAGACACCGGAAGTGATCAGCGCTGTGTTGCTAGAGGTCAGGGGTTTATTTTGGTTCTGTGCTGGATCTGGTGAGCGGGGTTAAGGATGCCTCCTGCCCGGTTTAACATTCCTCTGCGGGCTTGGCGTCACTGGTGTGTTTTGAGGAGCGTGCAGAGCCTCAGAGGGAGGCAGTGTGGAGGTGCTCGGCCACGGTGCTCCTCGGCTCAGCTGAACGGCGGCGATATGAGGAGCATGGAGGAGATCCTGCGCAGGACGGTGGTTCCTTTGCCCACATACGAGACCAGAGACAAGTCCCCCCCGCCGCCAGACTCCAGCAGCCTGGAGTTCATGTACTTCTACAGGAAGCTGGACAAGGAGGGAAAACACACGCTTCTGGACAAGCTGGCTAGGGAGTACGGAGTGGACCACCGGGGTGTCTCGGAGCTGGCTGTGAAGCTGCTGGACACGCAGCTGAGGGACTCGGCCACAGTGCTGCAGGCGGAGGACCGGCTGCGCTACAGTTTAACCCCCAGATACAGACATTTACTCGGCCATATAAGCAGAGTAGAAGGGGGAGTGAAGTTTCTGGTGGACCTGCGTGCAGATCTGCTTGGTCTTACGTCTTCTAAGATCACTGACAGTCCCTACATGAGGGAACTCAACAGCACTCTGAAGAGCCTCCTGTCTGAGTGGTTTTCTGTGGGGCTGCTCCGGCTGGAGAGAATCACCTGGCAGTCACCCTGTGAGCTCCTACAGAAGATCAGCCAATATGAGGCAGTCCATCCAGTGCGCAACTGGACCGATATTAAGCGCAGAGTGGGACCCTACAGACGCTGCTATGCCTTCACCCACGCCTCCATGCCTGGAGAACCTCTGGTGGTCTTGCATGTAGCGCTCACCCAGGACATTTCAGATAACATTCAGTGCATCGTGAGAGAGTTTGAAACTCTGGATGCGATAGAAGAGGTGCAGAAGATCAACACTGCTATCTTCTActccatctcctccacacagGCTGGCCTGCAGGGGGTCGAGCTGGGCAATTACCTCATCAAGAGGGTGGTCCGAGAATTGCAGAGTGAGTTTCCTCACATGGCTCAGTTCTCCAGCCTGTCTCCCATCCCAGGCTTTACGTCGTGGCTGCAGGGTTTCCTGGGCCAGTACAGGAAGGAGGGTCGTGCTGCCGAGCTCCTGACCGAGCAGGAGTGGAAGGAGGTAGAGGAGCTGACCGGTGCAGCCTCCGGGGCAGCAGCTCTGGAGACCCTGCGCTCTCTTCTCGGCTCTGGAGAGTGGCTGCGCTCTGAGCGGCTGGTTCGAGTACTGGAGCCTGTGTTGAAGCGCCTGTGCGCCTGGTACCTGTATGGAGAGAAGAGGCGGGGCTACGCACTCAACCCCGTCGCCAACTTCCACCTGCAAAACGGCGCCGTCTTGTGGCGGCTGAACTGGCTCGCAGACACCAGCCCCAGGGGCATCGCCAACTCGTGTGGCCTCATGGTCAATTACCGCTATTTTCTACAAGAAACCAGCACCAACAGCGCCACCTACCTGCATAACAAAGTCATCACAGCTTCAGAGCAAGTGCTGAGCCTGGTTTCGCAGTTTCAGAAGAACAGTAAACTATAAGAGTAAACTTCTGATTCACTCCAATAGAGGAGTGACCTCTGTAAGAATCTGCTCAGGAGTTCTGAgcactgtatataatatgtagtataaaaaataactcTAGCACTTTGATGTCAATGTGACTAAAGGTTTTGACTGCACTTGtataaaattgtgtaaaaattgtATAAAAGCTTGTACAAACTATTATTTAAACTACTCTGATTTGGTTGTGATTTGGATTTGGTAGTTGTTTTTTAGTAGACCTGTAAAGTATGATTGTCATGATTTTGTGTGTATAATTAATCACACTCTGCAGTACACTTATGGTAACATTAAGCACTTATCATTGTCTAAACACCACTGACTGAGCTGCAAATTGTTCAGATTTAGTTTAGTGTTAGTCTAAATTCAGGTCAAATCATTAGCTTCAGTGCTAAATTTGGCCCTGATGTGGTTCTGTGGAGACTAGTCTTGGATGACTAAATTGCAGTTTCAATTGTGAACTGCCTATATCTTAGGCTTGTCTTAATCTGGGTTTGGGATGtcatatatttaattgtaaagcAAGACTATAAACTGATTCATGTAACCGATTCGATTAAGCTTAATCTTAATCGTTGGTTGGGAAGACAAACTTAGACAATTAACTCAAAGGTTTATGGAGGAACCTTTTGAAAGCCTAGTCATGGATGactaaactgttaaaaaaaattctattggtAAAAATGAATAGAACCCAGTACATTGAATGCCACTGCGTTTAGAATATGTTTTGATTCTCTAAGCCTTTTGTTCCAATTATGTGTTAAACTCATAACATGACCTTCAAACGCTGCAGATGATGATATGTAGCTTGAAATGTACCCGCTGAAAGGTAGTAATCTTAAAGGCTGCTGcacataatgcatttttttttacagtgacatTCTTTACATTCTACTTTCTGAAAGCAGTGCAGTAGCCTCAAGTACACAATTACCTAACAGCAGTTACTCAACCTTTTCTTTCCCTGCTAAAGAATCTTGACACAATATCTTGCATTTTCCCATATTATAATTCTTAATTCAGAGGAAAAGTTTGTTAATAGCAAAATGTATGGGAGTTGTTTATCGCAGGGTGCATTTctcatacagaaaaaaaacagcttcttCCTTATATAGGTTTAGTGATCCTGACAGCGTGCCTTCAGAGGTCTATATGCAGTTTGTCCAAGTTTGTCTCAGATCAGTTCTGAGCTTGGTAAAACAACGTAAAAACGCTTTGTGTTGTGCCAAATGTTGCTCCCTTATTTCAGAGAATTTTCAAAAATGAGCCTATTTGATCTATTTTGTCTTCGGTAGAGGGCTTGTGCAGGTTTATCTAGCATTTTCACGTTGTTGCTTATTTTCTGGTTTGAAAGAGTCGTGGTAATGAAGCATGAAGAATCTATCAGCTTCTGTCATGTCCCTGTTTCacattgtgtgtgagtgtgtgtttgtgaagggTAGAATGAGTGGGTGGAGGCTACTGGAATAAATGAGCTTTTGATTTCTTCA

Function

symbol description
mlycd Predicted to enable malonyl-CoA decarboxylase activity. Predicted to be involved in acetyl-CoA biosynthetic process; malonyl-CoA catabolic process; and positive regulation of fatty acid oxidation. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be active in mitochondrial matrix and peroxisomal matrix. Human ortholog(s) of this gene implicated in cardiomyopathy. Orthologous to human MLYCD (malonyl-CoA decarboxylase).

NR:

description
PREDICTED: malonyl-CoA decarboxylase, mitochondrial

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0050080 malonyl-CoA decarboxylase activity molecular_function

KEGG:

id description
K01578 MLYCD; malonyl-CoA decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250515.3 True 3157 mRNA 0.47 5 12783799 12800375

Neighbor

gene id symbol gene type direction distance location
utp4 utp4 coding upstream 259687 12515462 ~ 12524112 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding upstream 449884 12031136 ~ 12333915 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding upstream 1322154 11450922 ~ 11461645 (+)
nup205 nup205,LOC107684652 coding upstream 1490126 11269015 ~ 11293673 (+)
fam107b fam107b,LOC107722469,LOC107738407,LOC102787157 coding upstream 1517479 11231961 ~ 11266320 (+)
vps9d1 vps9d1 coding downstream 818313 13618688 ~ 13647775 (+)
spata2l NA coding downstream 859555 13659930 ~ 13664333 (+)
uri1 uri1 coding downstream 866310 13666685 ~ 13675380 (+)
cry1 cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024 coding downstream 1160680 13961055 ~ 13972324 (+)
LOC103042895 LOC108425440,LOC107740436,LOC107583921,LOC107672215,LOC107749314,LOC107553958 coding downstream 1207640 14008015 ~ 14022424 (+)
G157920 zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272 non-coding upstream 25710 12741848 ~ 12758089 (+)
G157905 NA non-coding upstream 122691 12655809 ~ 12661108 (+)
G157903 NA non-coding upstream 133615 12647988 ~ 12650184 (+)
G157795 NA non-coding upstream 350503 12325867 ~ 12433296 (+)
LOC111194767 NA non-coding upstream 352079 12429768 ~ 12431720 (+)
G157926 NA non-coding downstream 62014 12862389 ~ 12862656 (+)
G157933 cdh13,LOC107684661,LOC107722459 non-coding downstream 174113 12974488 ~ 12982471 (+)
G157943 NA non-coding downstream 475085 13275460 ~ 13345464 (+)
G158023 NA non-coding downstream 1048267 13848642 ~ 13849299 (+)
G158045 mterf2 non-coding downstream 1183571 13983946 ~ 13987158 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 42797 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 417029 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 1640328 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 2029101 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 2069817 10700788 ~ 10713982 (+)
LOC107197649 LOC108416831 other downstream 933570 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 1173446 13973821 ~ 13980025 (+)
G158369 NA other downstream 2249847 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 2327993 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 2505837 15306212 ~ 15315552 (+)

Expression


Co-expression Network