LOC103042895 (LOC108425440,LOC107740436,LOC107583921,LOC107672215,LOC107749314,LOC107553958)


Basic Information

Item Value
gene id LOC103042895
gene name LOC108425440,LOC107740436,LOC107583921,LOC107672215,LOC107749314,LOC107553958
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14008015 ~ 14022424 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250534.3
AGTGTGTACATTTAGGCTAGAGAGGTTCATAATCTCACACCACCAGAGGAAGCAGAAGCAGCACGAGGATCGTAGCTATATCTCCGCGCCCCCATCTCCATTCCCACCCAtcgctccatctctctccacacacagcAGCTTCTCCCTCAGCCTTCAGCCAGTTCCATACCCATCACCACTGGGCGAGACTCGCACCTGCAGCCGAGCACGCGCCCGCCCGCCGAGCCTCCAGCAACTTCAGCCCACTGAACCCAGTCTAAGAGAGGAGCGCTGGATCAGACCTGTTCATGACTGGTGGAGGTACTGGCAGCAGGCCAGTATGGAGTGCTCGTGGAAGACAGTGCTGCTGTTGGTGTGTGCGTCTTTGGGGGTGCAGTACACTGCCATCcgctcccttcaggacttgttcCCTGGGCCCTGTCCGGATTCTGGCCAATGTCAGGGACGCCTGGGTAAAGATCACAGATGGAAATTCTCCTGCGACGACAACTCCGTACCCACGGAGCATAGCGTGGCCTCTGCTCGTCGGAAGCACATACTTCTTTTCGCACAAACCCGCAGCGGCTCCTCCTTCACAGGACAGCTGTTTAACCAACACCCTGAGATCTTCTATGTGTTTGAGCCACTTTATCATGTCCAGCAGACCTTCACCAACTCCAGCAGCCGTCTCCGGAGGGCTTTGGATGGCCGGGCTCTTCTGGGAGCCTACAGAGACCTCCTGCTCAACCTCTACACCTGTGACCTCACCTTCCTGGAGAATTACATTCGACCCGAGCCACAGGATCACATGACAGCCTCCTTCTTCCGCCGGAGCTCCAGCCAGGCCTTGTGTTCGCCACCTGTCTGCCAAGAGGGAGACGTGGAGATTCGAGGAGGGCAACCGGACGAGATCTGGTGTCCTAAAAAATGCGGGACCTTGAACCTTACCTTGGCATCGATTGCTTGCCAGACCCGAAGCCACGTGGCCATCAAGACAGTACGGATCCCTCTGATCGGCGATTTACGCACACTGTCAGAGGACCCACGTCTAGATTTGCGAATTGTCCACCTAGTAAGAGACCCCAGAGCCATCTTGGCTTCCCGTATGACTGCATTTGCTGATCAATTTAGGGCCTGGAAGATCTGGAATGCCACAGATCGCCAACCACGTTATGTGGACCTGACACAGATCACCAAAACATGCAGAGACATGGAGTATTCCGTGGCGAATTCTTTGCAAAGACCAGCATGGCTAAAAGGACGTTACCTGCTGGTGCGCTACGAGGACCTGGCGCTTAACCCTGAAGACAAGGTTAAAGAGATCTACAGATTCCTGGGCTTGGATATAGACAATAGAGTCCTCACATGGATTTCTCAAAACACTAATTCAACTACCCCGTCCTCTTCAGAGTGGAATTACAAGTATTCTACCAGTAGAAACTCCAAGGCCACAGCCCACAGCTGGAGACTGCGACTTGGCTTTGACATTGTGAAGACAGTACAGAGTTTATGTAACACTACTTTTGCCTTATTGGGGTACAAACAGGTACAGTCTGAGGCAGAGCTAAGAGACATGAAGAACAGTTTAGTAGAGCCCAGAACTTTTTAGACACTTCAGTTCCTCCAAAAAAGATTGAGTTGTTTCCATTTCCTATTCCccaaatgtatgttttttttataatctgaCATTTTCACACCTACATCAgtcaaaatcatgttttttaagGTGAATATTAAATTTGATTCTTTAGAAGAAAAATCATCAAACTTATTATTTGGGTCCAGGATTATTGGGCACAAGGCAGGAATACTCTCAGGACCACCCTGCAGTCCATCACAGGGTGATCCCCGTAAATGTGTCATGGTCCAGTGCATacattacactttattataaccaatgactgtatgtaaGCATAGACAGCGCAAGCGAAGCCACCACTGATTTAGTGCTTCTGCTTCCTTCatgcagtatgatgtgtagcttcCCCCATTCTCATGTGTTTCAGTGGCAAAACATCTTTTATGTTGGCTTGAATGGAACACCTGTCTGTATTACAAGAAGAAACAGAGTTGAGAAGAGCTGTTGTCGAGCAAATAGTATGTTAATCATAATATTGACCATGTTATGTTTTGCTCTTGGACACATTAACAGACACTCTCTTCTAAGTTCTTTGCCGTATTCTTGTAAGACTGATGTTGCATAAAATGGCCATATATATCAATGTCATTTAATTAGTTGttagtatttttaaacatgctggATTTCATAGTATTTGTTCTTAGATTCGCACAGCATACAGGCACACCACATTTAAATTCTGGTGTGAACTAGAtccaataatatttaaaataacttttaatttaatctcACAGCAACTCAGGGGTTTAGCTAGACTTCCTAGTAGCTTCAATTCAACTCAGCATTACACTGGGTATCAAGGGGACATTTGCATCTAAGGTGCAGGCTGTGCAAGATTTCTAGGGCACTATGGAATGGATGGAAAATAAATCCAGCTGCCcatgcttatatacagtcattggtaATGACCAAtggcaaacactttttgttcAATACTATCTCGccatttaaaatctttaataatgTTTCAATGTTTCAGATAACAGTAACCTGCAGGTTGAATATGCCTTGCTGTTTGATCACAGCAAATATCTGTTAGATCTCTAACACTGTTACATATAATGATTCAATAACAATGTATGAATCACACTTACAACCGCAAGGTGTGACTCACACCCTCTTGCTTTTTCAATAATGCTGGAATTAAATGCTGTGGAAAGATCAGTGCCTCGCCTCAGGTATGAAGTCTCAACAACAGAGAACATGCCTTTAATGTAACTACTATACTGTGGTTGCTGGGATGAATCCAGCAAAGAAACACAGTGGTTATTTGTGcacaatattgtttttattatttaatgcatatttaatatgtgtatctattaaatggtaaaatattaaTCTTTGGGGGTTCtgatgtgtgtttctgtggCAGCGACAGTGCACTATGCAGGAATGGGAATAAGCTGTGCTCTTCTTTCTTTGACACTTCACTGTTGTTATGCTGAGCCTGGAATTATTGGTAAGTGCTGACCATCATTTCAACTCCGGTGCAGCAGAAAGCCACGTCAGCACAAAAATGTGCATCAAAGAATGAGATTAACAAGAGATAATGTCTATAGCTCACAACGCTTTTGAAGCTCCTGTCAGGTGCTTTGGATTCTGAGGAGAAAAATGGTGTCCATTTGCCACATTCTTGATAAGAGTAATGGACATTCATGCAGCTGAAAGGGGTTTGGGTTGCTGGTGGTCTGATGTTTTCATACAGCCTGCTTTTGTCGAATTGTGCTGTGGCAACTGAACATTAACAGACTGGGGAAATTAGCTAATGACTGTGAATGATTTAACAGGGCAGACTAGACTCTTTCTTCATCTACTGTTTTCCTCAAAGACTTAAACACAGCAGCtgaaacacattcacacatttaGACATTTTGCCTCCAAAATACCCTAATGACTTTAAAATGTCCAAACATGCagattttgtgtgtttgtttagtgAAATGGCAGGTATGATGGGAGACCCTGTTAAAAAATAACCAATGTCTCATATTGAAGAAGACTTTAGAGCTGGTGAACTGAAATCAATATTGTCTGTATCAGTAATTACAAGTGTTATGTCCATATAGATAcattagggttttttttatactt

Function

NR:

description
PREDICTED: carbohydrate sulfotransferase 1-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250534.3 True 3712 mRNA 0.44 3 14008015 14022424

Neighbor

gene id symbol gene type direction distance location
cry1 cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024 coding upstream 35691 13961055 ~ 13972324 (+)
uri1 uri1 coding upstream 332635 13666685 ~ 13675380 (+)
spata2l NA coding upstream 343682 13659930 ~ 13664333 (+)
vps9d1 vps9d1 coding upstream 360240 13618688 ~ 13647775 (+)
mlycd mlycd,LOC107583902,LOC107722462 coding upstream 1207640 12783799 ~ 12800375 (+)
LOC103043515 LOC108419231,LOC105022153 coding downstream 37379 14059803 ~ 14075538 (+)
LOC103047487 slc17a8,LOC107672209,LOC107583818,LOC107553956 coding downstream 208056 14230480 ~ 14247822 (+)
nr1h4 nr1h4,LOC106573302,LOC106561422,LOC107672305 coding downstream 229972 14252396 ~ 14277266 (+)
LOC103046676 LOC108430366 coding downstream 258475 14280899 ~ 14301400 (+)
ube2n ube2na,ube2nb,ube2n,LOC105897570,LOC107707098,LOC107658971,LOC106609528 coding downstream 285944 14308368 ~ 14321858 (+)
G158045 mterf2 non-coding upstream 20857 13983946 ~ 13987158 (+)
G158023 NA non-coding upstream 158716 13848642 ~ 13849299 (+)
G157943 NA non-coding upstream 662551 13275460 ~ 13345464 (+)
G157933 cdh13,LOC107684661,LOC107722459 non-coding upstream 1025544 12974488 ~ 12982471 (+)
G157926 NA non-coding upstream 1145359 12862389 ~ 12862656 (+)
G158038 ric8b non-coding downstream 66042 14088466 ~ 14092532 (+)
G158068 NA non-coding downstream 93895 14116319 ~ 14116843 (+)
G158085 NA non-coding downstream 127062 14149486 ~ 14150489 (+)
G158086 endouc,LOC108425714,LOC107749311,LOC107686338,LOC107672228 non-coding downstream 128994 14151418 ~ 14157033 (+)
G158093 ppfibp1 non-coding downstream 146535 14168959 ~ 14190042 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 27990 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 265515 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 1267013 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 1641245 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 2864544 11031065 ~ 11143471 (+)
G158369 NA other downstream 1027798 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 1105944 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 1283788 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 1745631 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 1748871 15771295 ~ 15771945 (+)

Expression


Co-expression Network