LOC103046676 (LOC108430366)


Basic Information

Item Value
gene id LOC103046676
gene name LOC108430366
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14280899 ~ 14301400 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250548.2
AGAGCTGCAGCCTCTGATGAGCCTCAGAACCAGCGATTGAGGCTCAGCAGAGCATCACTATGGAAGAGGAGCAGAAGCAGACTGAATTCAGGAGGGCATGGGATGCCTGCAGAGAAGTTCCAGACATTCAAGATGAGTCAAATCCCAAAAAACGACTGCGGTTCATGAAATGGTTCAGCTGTACCATCGTAGGTGTGCTTGTGTTCGTTCTGGCACTGTTCAGCAAGTCATCCTTTCTGATTTTGGTTACACTTGGAAGCAACTCCACTCTGAGCATCCCGGCAGAACACAAACCGAGCGCTCTGCTGGGTATCGGCTGTGTGCTGGTTGGACCAAGCGTCCTCCTGCTTCTGAAGAGTGTGTGGAAGTTCATTTTCAAAAGTGCAGCAAAACCATCCAAGAAAACCGTTTTGTGGgtGTTAACTGTTGAGTCGGTGGTGGCGTGTGGAGAGGTGCTTCTCACAGTGTTGGCCATGCCCCATTTTGACATTGTCACTAACGTGATGATCCTGAACAGCGTGAGCATCCTGTCTGCGGTGCTACAGGTAGCCGCTGAATGTTGTGCGAATGTACAGAAGAGGGTCATAGTGGTAAAATTGAGTTCCATCATCTTCAGTCTTCTGGGTTACATCCTCTTTATAGTCAGCTACTTGATAAATGAagataaactcttaaaactgataAAACCTATCGGCCTGGCCATTTTTGGAACCATCTGTGTTTCTCTGAACTGGTGGGAGAATTACAGCACCCTCTTCAAAAACCACTTTCTGGAAAAGATCTCCAAAGACATAGCCAGAACCCGGAACGTGGCCTGCATCCTGTCTTCTGTAGTGAAAATTCTCATCACCGCACTTGTGGTTGGAGTTAGTGTCCCTCCAGCAGAATGGTTGTCTCTAAAATCAATCCCCACAACTGTGAGCACCACAGTCTTTGGGTTGGTGGCCGTCCAGATTGCATCCTCTGCGATGTGCCGCTGGTTTGTAGTGGTGGCTTGTAAGATGCACGCCCTGCGCTGCTGTTTTGTTGTGCCCATGTACATTGCATCAGTGGCCGTTCTGATAGTGTTCCTGATTCCACTCGTGACCTTCTACGTACATCCTACTTCTAGCATTTCTTTCTGTGAGAGCAGGACTGTTCAACCCCTACACTCCAGCCCTCAGTGGCTGATGTCCTTATTAACAGAAGTCACAGGCACCCTTTGCACTCGACTTATCGTGGTAGAAAGAAATATTAAAGGACTGGCGATGCTGGGGTCATATGCCCTGTGCTGGTGGTTAGGACTCATTCTGGGCACAGTGTACATCTGGTTTCTGAAGATTCAGCGCATTGAGAGGACTCAGGATCTGTTCTCAAAACAGATGTATGAGGGAGCGTTTCTGGAACAGTCCATGTTGCTCAGCACCTGTTTCAAGAAGCAGTACAAGGAGAGCAGAAATCATGAGATTCTCTCTGAAGACCTAAAAGGCCCTGAGGACCCGTCGTCATTTTTCCTCCACAGATCAGATGAACCTGTGACAGTCTACTTGTGTGCAACAATGTGGCACGAGACATATGCTGAAATGATGAAAATAATCATTTCAATGTTCAGGCTTGACAAATATCGGCCAAAAATCAACAAACCAAAAGATGCCACCTTCGAATTCCACATTTACTTTGACGATGCCTTCAAAGATGTGAATAAGGGCAAAGCGCGGCATGCAAACGAATACGCTGAGATCCTGGTGGAAGTTATCAGAGAAGTGTACACCATCTTCAGTGAGGATGATCCATGTATCTTCAAGAAGAAGCCTTGTCTCCCTCAGCAGAAGATTATCAGCACGCCATATGGGGGCCGTCTGGAGTACACCCTTCCAAAAGGCAACACAATGATGGTTCACCTCAAGGACAAACAGCTGATTCGTCACAAAAAGAGATGGTCCCAGATCATGTACTTGTACTACATCCTGGGCTGGAAACTCAACAGAAAGTACTTTAAGAAGTTTGAAGAGGGTAGTGATAAGAAAACACTCAGGGAGGAGCTAAAGaaagagaaagagaacacgTACATCCTGGCCCTGGATGGAGACACAGATTTCCAGCCCTCTGCTGTGTTGTTACTGATTGACAGGCTGAAGCTTTACCCAGAGGTCGGCGCTGCTTGTGGCAGGATTCACCCCACCGGCACAGGACCGATGGTGTGGTATCAGAAGTTTGAGTATGCAGTAGGTCACTGGCTGCAGAAGACTGCGGAACATGTGTTCGGCTGTGTGCTCTGCAGCCCGGGATGCTTTAGTCTCTTCAGAGGAGCGGCCCTCATGGACGACAACGTTATGAAGAGATACACCACCAGAGCAACAGAAGCCAGCCAGTACGTCCAGTATGACCAAGGAGAGGACCGCTGGCTCTGCACTCTCTTACTGCAGCAGGGCTGGAGGGTGGAGTACAACGCAGCCTCAGACGCCTACACCAACGCCCCACAGGACTTCAAAGAATTCTACAATCAGCGGCGGCGCTGGGGGCCGTCCACCATGGCCAACACCATCGATCTGCTCGGCTCAGGCCGCTTGACCTCTAAAAGGAACAAGTCCATCTCCAAACCCTACATTCTGTACCAGGTCATCAGCATGGGGGCCTCCATCTTGGGCCCCGCCACCATCTGCCTAATGATTGCTGGAAGCTTCACATTTATTATGAATATGGATCCGAATCTGGCTCTTCTTCTAGCCACAGTGCCACCCACAATCTACCTGATCCTGTGCTTCAAGCTGAAGTCTGACACACAGATCCAGATAGCAGCAGTCATGAGCATTCTGTATGCATTCCTCATGACTGGAACTATTCTCTCCATTATTGGTGACATGGTGAAGCAGCAGACATTCATGACCCCTGCTGGCCTGTTCCTCATTAGCATGACCCTGATGTATCTCATTACAGCAGCTCTGCATCCTCAGGAGTTCTCCCTGATCGTCTATGGGCTCTTGTATTTCCTCTGCATTCCCAGCGGCTACCTCATGCTAGTGATTTACTCCATCGTCAATATGAACAATGTCACATGGGGGACGAGAGAGACCGGTGGCAAAGCTAAGACTGCAGCAGTGCATGCCATCAAGAAGCAGGTCATGCAGGCTACATGTTGTAGGTGCCCATGTGGGAGCAGCACTGAAGATGGGCCTTCAAATACGCATGAACTTTTGGAATCGAGTGTACCTGAGCAGCAAGATCTTAAAGTTCCTGCGGATTCTGAAGATGCTGGAAgTAGATCACATGAAAGCCAAACACAGCAAAGTCCTAAAAGCTGGATTGAAGAATTGCAAACAAAATCGGATGACTTCTcgttacacacagctgcacttTCAGAGGATGAAGTTGAGTTTTGGAAAGAGCTTCAGAAACAGTATTTAGAGCCTCTTAATGAGAATCCAGAACAGCAGGAAAAAATTGCCAAGGACCTCAAAGACCTCAGAAACAAAGTTACATTTGGCTTCTTTATCTGCAATGCTATCTGGCTAGTGGCCACCATGTTTCTCCAAGCCATTGGCAACTCAATCTCGCTGTCCATTCCAAAAATCTATCCGAATGGGACGCTTGCAGAGGGCGAATCATTTTCGGTCGATCCAATATCACTGATGTTTCTTCTAAGCTTTGCATTACTGCTGTTCATGCAGTTTTTTGCAATGCTTTACCACAGAATCTACACGCTAATCCATTTTGTGGCTTATGTTGGCACGGAGAGCAAAGCTATCCAAAAACAGTCAAACCAAAAGGCTCCTAAAGCTTTGGAAACAAGCTCCCACAACAAGAACAAGCCTGACACATCAATGTGCATACAAAATCCAGCTGCGGAAGAGACTGGAGCTTGGGTATGAGGCCAAAACTGTGTTTACCTCAATGCTGGAGTTGGCCTGGGTGATAAGACACTGCAATGCACTTTTTTATatcaaatgtgtatttatttattcagtgaaATGAAACATACTTCAAAGTGTACAGCCTTTATTTGAATAGGTTCCATACTGCTTTACTGATCCTCGGTACTGTACTTTCTTTCTATTGTACATTGAAACTAATGAAagagacatttttattttaaaataaaaagcaagaaT

Function

NR:

description
PREDICTED: uncharacterized protein LOC108430366

GO: NA

KEGG:

id description
K00698 CHS1; chitin synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250548.2 True 4088 mRNA 0.47 19 14280899 14301400

Neighbor

gene id symbol gene type direction distance location
nr1h4 nr1h4,LOC106573302,LOC106561422,LOC107672305 coding upstream 3633 14252396 ~ 14277266 (+)
LOC103047487 slc17a8,LOC107672209,LOC107583818,LOC107553956 coding upstream 33077 14230480 ~ 14247822 (+)
LOC103043515 LOC108419231,LOC105022153 coding upstream 205361 14059803 ~ 14075538 (+)
LOC103042895 LOC108425440,LOC107740436,LOC107583921,LOC107672215,LOC107749314,LOC107553958 coding upstream 258475 14008015 ~ 14022424 (+)
cry1 cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024 coding upstream 308575 13961055 ~ 13972324 (+)
ube2n ube2na,ube2nb,ube2n,LOC105897570,LOC107707098,LOC107658971,LOC106609528 coding downstream 6968 14308368 ~ 14321858 (+)
nudt4 nudt4,LOC107553971,LOC107740279,LOC107672310,LOC107686239,LOC105898052 coding downstream 21812 14323212 ~ 14342320 (+)
eea1 eea1 coding downstream 42339 14343739 ~ 14374803 (+)
LOC103025600 itpr2 coding downstream 104181 14405581 ~ 14514146 (+)
bhlhe41 bhlhe41 coding downstream 232328 14533728 ~ 14539364 (+)
G158093 ppfibp1 non-coding upstream 90857 14168959 ~ 14190042 (+)
G158086 endouc,LOC108425714,LOC107749311,LOC107686338,LOC107672228 non-coding upstream 123866 14151418 ~ 14157033 (+)
G158085 NA non-coding upstream 130410 14149486 ~ 14150489 (+)
G158068 NA non-coding upstream 164056 14116319 ~ 14116843 (+)
G158038 ric8b non-coding upstream 188367 14088466 ~ 14092532 (+)
G158238 NA non-coding downstream 259250 14560650 ~ 14562131 (+)
G158335 NA non-coding downstream 609558 14910958 ~ 14919932 (+)
G158357 NA non-coding downstream 677343 14978743 ~ 14980092 (+)
G158359 NA non-coding downstream 706105 15007505 ~ 15008083 (+)
G158381 NA non-coding downstream 768386 15069786 ~ 15070409 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 300874 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 538399 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 1539897 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 1914129 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 3137428 11031065 ~ 11143471 (+)
G158369 NA other downstream 748822 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 826968 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 1004812 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 1466655 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 1469895 15771295 ~ 15771945 (+)

Expression


Co-expression Network