bhlhe41 (bhlhe41)


Basic Information

Item Value
gene id bhlhe41
gene name bhlhe41
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14533728 ~ 14539364 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250572.3
CTTCACGCCTCGGCAAAGTGGCAGCCGAGCTCAGGCGAGTGCAGACATCATTCTGAAAGTGCTGCACTGCTGCACATACACAACCCTCACCTCCCTTAACACTTTCACCGCTCTCGGAAATACAAAACCGACCTTAGAGAACAGATCTCCCTCTGAACTACGAGAAGAGGTGGATGAAAGAAGGAGAAAGTTATGGATGAAAGAATAGCGCGACTGCAGGACAGACCTTTCCTGGATCATGCAGATTTCTTGGGggTCGAGTATTCGTCTCTGTACATGTGTAAATCAAAAAGAGGAATgaagagagaggaaggaaaGGACGCTTACAAGTTACCCCACAGACTGATTGAGAAGAAGAGGAGGGACAGGATAAATGAATGTATCGGACAGCTGAAAGACTTACTACCCGAACATCTAAAGCTGACGACGCTGGGTCATCTAGAGAAGGCGGTGGTTCTGGAGTTAACTCTGAAGCACTTGAACGCTCTGACGGCGGTAACAGAGCAGCAGCACCAGAAGATCATCGCTCTGCAAAACGGTGACCGGTCACTGAAGTCCTCCATCCAAGCTGATCTGGACACCTTCCATTCAGGCTTCCAGGCGTGTGCCCGGGAGGTGGTGCAGTACCTTGGCAAGGTGGAGAAGTGGACAAGCCGTGAGCAGCGCTGCACCCAGCTGGTGGACCACCTGCATAAAGTGTCTGCACAGCTCCTGCAGCACCCACTGACCAATGGTGAAGGCCATGAGCGTGAGGGTCACGCCAAAGACGGTCATGCCAATTGCGTGCCAGTCATCCAGAGGACTCAGCACCAAGAGCTGAATGAGAATGACACAGACACTGACAGTGGCTATGGTGGTGAGGTGGAGGTGAAGAGTGATGGGCGGCCAGACAGAGTGGGGGACGCTGGGGCAGTAAAAGGACTTAAAATCAAGCAAGAATTTGGGAGCGATGAGCAGCGGCCGGCCAAAAAGCCCAAGCTTAGTTGGTCGGCAGGTGGTGCTGCTGGCACGGACGCTGCCAGCCGACCGGAAATGGCTTTTATGAACTCACTGATGGCGGGAATGGCAGGCGTGGGGCAGCAGACACCCTTCTGCATGCCTTTTTACTTCATCAACCCATCAGCAGCTGCCTCATATGTGCCCTTTCTGGACAAGAGCCATATGGAGAAGCTGGTTTATCCGCTGGCAACCCCTTTCCCCTGGCTCTATCCAGGGCTGCCCACTGCAGCAGCTGCTTTCAACTCCAAAAGCTTCGAGACCCCATCCAAGGATGAAgattcttctccttctccttctgctACTGATCTGGAGAGCCGAGCAGAGGCCTCCTCGCCTTTAGCAGAGGAGCACGGCTCAGAAATTGAAAATACAGAAGAGCAGAGCCAAAGTGAAGAAAATGAGGGTACATAGACCATCTGTCAGTTctcaccttgtttttttttttggcttgtaAAATTGCGTAGCCTATTTATCCGTTCCTTAATTTAATGGTCGTAGAGTGTTCTGTAGCCCTGTAGATGTTTCTATGGAGTTTCCTGGCGAAATCTGTACTTTCAttttgtatctctttttaaaagaaacagtttggCGAAAATCAAATGAGCAAAGTTTTCCTTATAACTCAAAGGTGATCAGCTAGTGACACAATTTGTTGTTCAAAGTTGGCTTCTTTggaacagtaataaaataaatgcaaatactaAATGTTGGGTGACCGCAGACTTTCATTACCTGTTAGCTACTTTAGCCCAAAACTAAATAAGCCAAAAATGGACACCAACTATGTCTTTGTTGATCATCTGCATTTGGGATATGGAGAATGTTGTGCAGGTTTGATTTTTGACCAAACTGTTACTTTAAGTGTTTGCAGAACAGGGTTTTATCGTCCAGTTGGTCTTTAGCTACTGTGGGGAGAATGACTGGGGGACGTTGTAACAACTCAGTGCCTTCTGCACTCAATCCTTGAGCTATTTTGAATGGAAATCGACAGTGATTGACAAGCCTATGTCTGTCATTAtagccattattaatcaatgGCATTAAAGCGTCTTaagcaagaaaaacaaaaacgcagatttgttcttttttttgttatttgcttAGGAAATGTAGTCTAGTGCAATACTCCATTAACGCTCTGTGAGCTACAACCAACTGCACCTCTTTTTATCAAGGATTTGGAAACATATTGGCCTCTTGGATGTACCGTATGATAGTGACCTCAAGCAAGCTGAAGCACCTGCTTTAgcaacttttttaatttttttggtatAACTACTGGATTGATGGTGaggatcgttttttttttttgttttgtttatttttttgtaatcttCAGTGCTTGAAAATAGTTACTTAAATACCTCAACATACTTTTAGCATTTAGACCATTTAGATCAGGATCCGTTCATTCCTAGAGAGTCCTAGAGAAAATGCTCCTCTGGCAGGGGTACTGCAGTAACTTTCTTGGATAGGATGGGAGTGGtttctgtttaaataaaaaaaataaaaacgtaacAATCCTCTGACATACTGTTACGACAGCCCCCTGCTCTCTCCCCCCGACTCTCCAGTAACCCATTCGGACTTAAGTTTAAGTGAGAAAGGTGTGGAATGGCACTTTGAATATTAAAGGCTTGGAGGTGACTGTGATTCAAGGATGTTGACTTCAGGCCAATTTTTGGACAAATTTATAAGGCTAAGCTGGACTAAACCACACCATCTGTGTGAGCCTGGGACTTACTGTGTGTCTCCTTGGAGAAACGGTTTTTATGGCCCCTGTGAAGGGCGGTCCCCAGCAAAAACAACCAACAAAAATATGTTAGCACCTTATGGAACTTTGATATTGAATGTAATGTGTGTTTTGGTAGATCTGAAAGTTTGTATATATtctgattaaaaagtaaaactttAATCCGCAAGGTAAAGTGCACTTGTTCATGCCTTTTCTGTTCCTTCAACACACTCCTCACATGCACCTGTTTCTAATCCATTGCCCTTTGTATTCCAACTGTAATAAGTATTTTCTTAACAAAATCCTGACTGACTGGCAATTCTCAGACTCAATGTATCTTgaataaatgtacaaatgacAGTATATATAATAGCTACACGTTTCAGTACTTCAGTTCTTTCAGTCAGCTTTCGGGTGTCATGCTTTGTTGATAAATGCCTATGATTTCAGTAGCTGTCTGGCTAAAGCAATTAAAGCAACGTGTGTATTTTGCCTTACTTAGTACTGCTTTCATCCACAACATTAAATGGTGAGATGATGTAACACTGGCTAAGGTCCCAATCAGCAGTCACGGCAGAGAACAACTTTTCAAGTTATTATTACTACAGCAACAACAAAGGCttcattgctttttaaataacaaaaagaaaagtgtgTATCTGCGGGTGTGTATTCACCGCGGCCTGTGCTACTAAACTCAGAGCTGCACCTGTGGCCGCAGCAGTCTCTCTGGTGTAACAGCTGCTGACTGGGACTTTACGTCTTGTGTAACATGCAGAGTGCATGTTGCTCTGCACGTGCCCACACAAGAATGCAGACGACCTTGGACTGGAGGAATGTAAGAAGGACGCATTGATTTTACTACCTTAAAAGATCAATGTTGGACTGTGACAAGGAGCTTTCCTGTTGTTCTAAGTTTGtaatgtttctttaagtttgtcAGAAGTGAGGAGAATGGTAAGAATGACCATTAACTTTGGCATCGAGTAATTTTGTAGGCCCCTTGTTCTTAGCTTCTTTGCCACAGCTGTCTTCTTGGCCTAAGCAGCAGCACGTGTCATGTAAATAGTATGTGAATATGCTCAATGTCCAATGTTCATGTTGTAGATGATTTATGGATTTTATAAAGGATAAAACTGAGCAACTGTTGCACATTTTTTTCCGTTAACGCTTTACACTGTTGCTGTTCTAAATTATTGCCGCACAGTTGTCAAATAAACTTCAAAAACTA

Function

symbol description
bhlhe41 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of transcription, DNA-templated; response to cold; and sleep. Predicted to be active in nucleus. Is expressed in several structures, including brain; cardinal system; pleuroperitoneal region; shield; and swim bladder bud. Orthologous to human BHLHE41 (basic helix-loop-helix family member e41).

NR:

description
class E basic helix-loop-helix protein 41-like

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250572.3 True 3965 mRNA 0.44 5 14533728 14539364

Neighbor

gene id symbol gene type direction distance location
LOC103025600 itpr2 coding upstream 19582 14405581 ~ 14514146 (+)
eea1 eea1 coding upstream 158925 14343739 ~ 14374803 (+)
nudt4 nudt4,LOC107553971,LOC107740279,LOC107672310,LOC107686239,LOC105898052 coding upstream 191408 14323212 ~ 14342320 (+)
ube2n ube2na,ube2nb,ube2n,LOC105897570,LOC107707098,LOC107658971,LOC106609528 coding upstream 211870 14308368 ~ 14321858 (+)
LOC103046676 LOC108430366 coding upstream 232328 14280899 ~ 14301400 (+)
LOC103026424 ctsd,LOC107686244,LOC107672285,LOC107740314 coding downstream 7443 14546807 ~ 14557263 (+)
lrriq1 NA coding downstream 49094 14588458 ~ 14632192 (+)
alx1 alx1 coding downstream 97428 14636792 ~ 14643499 (+)
nts nts coding downstream 192428 14731792 ~ 14737727 (+)
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding downstream 278704 14818068 ~ 14830344 (+)
G158093 ppfibp1 non-coding upstream 343686 14168959 ~ 14190042 (+)
G158086 endouc,LOC108425714,LOC107749311,LOC107686338,LOC107672228 non-coding upstream 376695 14151418 ~ 14157033 (+)
G158085 NA non-coding upstream 383239 14149486 ~ 14150489 (+)
G158068 NA non-coding upstream 416885 14116319 ~ 14116843 (+)
G158038 ric8b non-coding upstream 441196 14088466 ~ 14092532 (+)
G158238 NA non-coding downstream 21286 14560650 ~ 14562131 (+)
G158335 NA non-coding downstream 371594 14910958 ~ 14919932 (+)
G158357 NA non-coding downstream 439379 14978743 ~ 14980092 (+)
G158359 NA non-coding downstream 468141 15007505 ~ 15008083 (+)
G158381 NA non-coding downstream 530422 15069786 ~ 15070409 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 553703 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 791228 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 1792726 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 2166958 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 3390257 11031065 ~ 11143471 (+)
G158369 NA other downstream 510858 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 589004 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 766848 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 1228691 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 1231931 15771295 ~ 15771945 (+)

Expression


Co-expression Network