Item | Value |
---|---|
gene id | LOC103030146 |
gene name | impdh1,impdh1a,LOC108442450,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC106561215,LOC103030146 |
gene type | coding |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035914.1 |
NCBI id | CM008317.1 |
chromosome length | 41377133 |
location | 8844976 ~ 8871398 (+) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
impdh1a | Predicted to enable IMP dehydrogenase activity. Acts upstream of or within developmental pigmentation and eye development. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in brain; digestive system; heart; muscle; and sensory system. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 11; retinitis pigmentosa; and retinitis pigmentosa 10. Orthologous to human IMPDH1 (inosine monophosphate dehydrogenase 1). |
impdh1 | Enables DNA binding activity and identical protein binding activity. Predicted to be involved in 'de novo' XMP biosynthetic process and GTP biosynthetic process. Predicted to act upstream of or within lymphocyte proliferation and purine nucleotide biosynthetic process. Located in cytosol and nucleus. Implicated in Leber congenital amaurosis 11; retinitis pigmentosa; and retinitis pigmentosa 10. |
description |
---|
inosine-5'-monophosphate dehydrogenase 1a isoform X3 |
id | name | namespace |
---|---|---|
GO:0006177 | GMP biosynthetic process | biological_process |
GO:0055114 | oxidation-reduction process | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0003938 | IMP dehydrogenase activity | molecular_function |
GO:0046872 | metal ion binding | molecular_function |
GO:0030554 | adenyl nucleotide binding | molecular_function |
id | description |
---|---|
K00088 | IMPDH, guaB; IMP dehydrogenase |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_007250927.3 | False | 5091 | mRNA | 0.45 | 16 | 8844977 | 8871398 |
XM_007250928.3 | False | 5075 | mRNA | 0.45 | 15 | 8844976 | 8871398 |
XM_007250929.3 | True | 5283 | mRNA | 0.44 | 16 | 8847558 | 8871398 |
XM_007250930.3 | False | 4975 | mRNA | 0.44 | 16 | 8847558 | 8871398 |
XM_007250931.3 | False | 4548 | mRNA | 0.43 | 16 | 8847558 | 8871398 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC103043520 | NA | coding | upstream | 8363 | 8831429 ~ 8836613 (+) |
LOC111194761 | NA | coding | upstream | 18518 | 8820102 ~ 8826458 (+) |
prpf18 | prpf18,LOC107671164,LOC107719961 | coding | upstream | 279478 | 8555188 ~ 8565498 (+) |
cpt1b | cpt1b,LOC100329197,LOC107599889,LOC107671150,LOC107686536 | coding | upstream | 311809 | 8520018 ~ 8533167 (+) |
LOC103026556 | LOC108264446 | coding | upstream | 331545 | 8508404 ~ 8513431 (+) |
LOC103031618 | NA | coding | downstream | 26179 | 8897577 ~ 8902959 (+) |
rbm28 | NA | coding | downstream | 33337 | 8904735 ~ 8919978 (+) |
LOC111194832 | NA | coding | downstream | 238696 | 9110094 ~ 9114054 (+) |
LOC111194762 | NA | coding | downstream | 242581 | 9113979 ~ 9116076 (+) |
lrrc4 | lrrc4.2,LOC103033525,LOC108442864,LOC108263937,LOC107559378,LOC107594935,LOC107738417,LOC107672593,LOC107673147,LOC107723939 | coding | downstream | 423175 | 9294573 ~ 9299415 (+) |
G157069 | NA | non-coding | upstream | 161873 | 8680809 ~ 8683103 (+) |
G157064 | frmd4a | non-coding | upstream | 236955 | 8603589 ~ 8608021 (+) |
G157054 | NA | non-coding | upstream | 276513 | 8568244 ~ 8568463 (+) |
G157052 | NA | non-coding | upstream | 277308 | 8566429 ~ 8567668 (+) |
G157027 | NA | non-coding | upstream | 406707 | 8432614 ~ 8438269 (+) |
G157210 | NA | non-coding | downstream | 20692 | 8892090 ~ 8894941 (+) |
G157224 | NA | non-coding | downstream | 77427 | 8948825 ~ 8949097 (+) |
G157226 | NA | non-coding | downstream | 94773 | 8966171 ~ 8966371 (+) |
G157305 | NA | non-coding | downstream | 472433 | 9343831 ~ 9344700 (+) |
G157311 | NA | non-coding | downstream | 521904 | 9393302 ~ 9393516 (+) |
G157055 | NA | other | upstream | 274099 | 8569930 ~ 8570877 (+) |
G156840 | cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 | other | upstream | 1238308 | 7600567 ~ 7606668 (+) |
LOC111194759 | NA | other | upstream | 1413408 | 7372376 ~ 7431568 (+) |
ptprq | ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 | other | upstream | 1673351 | 7093507 ~ 7171625 (+) |
G156188 | NA | other | upstream | 3687576 | 5157154 ~ 5157400 (+) |
G157383 | NA | other | downstream | 1069431 | 9940829 ~ 9941805 (+) |
gan | gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 | other | downstream | 1701345 | 10572743 ~ 10591523 (+) |
klhl36 | klhl36,LOC107684687,LOC107722460,LOC107666227 | other | downstream | 1829390 | 10700788 ~ 10713982 (+) |
LOC103038570 | cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 | other | downstream | 1880301 | 10751699 ~ 10754698 (+) |
hipk2 | hipk2,LOC107722467 | other | downstream | 2159667 | 11031065 ~ 11143471 (+) |