rbm28


Basic Information

Item Value
gene id rbm28
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8904735 ~ 8919978 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250936.3
TGTGGGGGCGCTGTTCCTCAGCAGCTCCACATTAAGATGTGGAGGTATCCGGTGTGGTTGGAGAGAAGCATGTCAGCCCTGTAAGAAAACGTGTGTTTACAGGTTTCAGGGCTGTAGAACTGAGCGGAGCtgcttattataataataagtgtAGTACAGCGAGGCGCTGGCCGGGTCTGGCCGCTTCAGCGGGCTTAACTGCGGGGAGCGGAGGAGTATATTATACAGAGtttagagctgctgctgctgctctatgTGCTTTAGTAGCTCTATAGAGTAAATCTGATCAGAATGGCTTCACTCACTTTATTCGTGTCTAATTTACCCGCTTCAGCCAGCAGTGCTGGTCTGGAGGAGCTGTTCTCTGAGGTCGGGCCGGTGAAGCGCTGCTTCGTGGTTAAAGATAAAGGATCAGAGAAATGTCGTGGATTCGGCTATGTTACATACTCCATGGCAGAGGACGCCCAACGAGCTCAGAATGAAATGAAACAGTATGACGGACGCAAAATAACCGTCGTTCCGGCAAAGAAAAAGATTCTTAAGCAAAAACAAGGAAGCAAGAAAGccCCACAAGAAACAGAAGGTTCCAAAGAGGCAGCAGAAACTGAACACTCTGAAGAGACATCAGAAACCAAATGTTCTGAAGAggcatcagaaaaaaaaagtcctcaGAAGTCTAAAGGGACCAGAAACAATTCGAAGAAAGCCAGGCTTATCATCAGAAATCTTAGTTTTAAATGCTCTGAGGAAGAGCTCAAAGAAACCTTCTCAAAGTTTGGAACTGTCCTGGAGGCTACAATCCCTCTCAAACCAGATGGGAAGAAACGAGGCTTTGcttttgtacagtttaaaaacatgCTTGAAGCAGGAAAAGCGATTGCAGCTACAAACATGAAAGAAATTAAAgacagacaggttgCTGTAGACTGGGCTGTGTCGAAAGATAAGTATACGAGTACTCAGTCAGGCGCAGCTTCAGgaaataaaaaagatctCAACGCTTCAGTGGAGACAGAAGATGACATAGATGAAAATGAACCTCCAAAGAAAAAGTCCAAACCACAgctaaagaaggaggaagacgACAATGACGacgatgatgacgatgatgaagaTGTTGACAACAGTGAAggtgaggaggaggaagaggatgatgaGTCTCAGGAAGCTGACAGTGATGATAGTGGACCTGCATCAGATgtcgatgatgatgatgatgatgatgatgatgatgatgatgacgatgacgACGACGACGATGAAGAAAGTGatcagaagaaaaagaagaaacagaagaagacCCTTCCATCTGATGTGAATGAAGGAAGAACTGTGTTTATCAGaAACCTGTCCTTTGACTCGGAGGAGGAGGGAATTGAAGAGTGTCTGTTACAGTTTGGAGAGCTGAACTATGTGCGGGTGGTGCTGCATCCTGAAACAGGACACTCAAAAGGCTGTGCCTTTGCTCAGTTCAAATCTAAAGAGGCAGCAGAGAAATGTCTGGCAGCTGCTGAGAACGACTCTGAGGCTGGTGGACTGAGGGTTGATGGGCGGAAGTTGAATATTGTGTTGGCGGTGAGCAGAGAGAGTGCTACTAAACTGAAGACGAATAAAGTGAAACTGCACAAAGGATCCAGGAATCTCTACCTGGCCAGAGAGGGATTGATTCGTGCTGGAACCAAAACAGCAGAAGGAGTGTCCAGCGCTGATATGGCCAAAAGGACACGGTTTGAGGACCTTAAGAGGGCGAAACTCAAGGATGTGAACGTGTTTGTATCCAAAACGAGACTGTGTATTCATAATCTCCCCAAAGCTGTGGACCGACAACGCCTCTTTAAGCTCTGCCTATCAGCTGCAGGGGGAGGCAAGGGGGTCCGCATTACTGAGtgtcATGTGATGTATGACAGGAAGCCGGTGCGAGGTCAGGTGGTTGGAAAGTCTCTAGGCTACGGTTTTGTGGAATTTAAGGAGCATGAGCACGCACTTCAGGCGCTGCGCCACCTTAACAACAACCCCACCATCTTCACTGATAACAAGAGGCCTATCGTGGAGTTTTCTTTGGAGGATGGAAGGAAGTTAAAACTGAAGGCCATGAGACAGCAGAAGAGCAAGGAAAAACCTGCCCCTAACTCTGCAGCTCAGAAGAATCCATCCCAAAAAGCTGGAGAACAAGAAGGAGGTAGCAAGAAGCCCAAGCAGAAGAAATCTCCTGGGAAGAATAAACCTGCTGGAACTAGATCTGACCACAGGCAgcagaacaaaggagcacagaGTGGTCACTTCTCAGGTTTCAGGACCAAGGCAGAAGTGGAACACGTGGAAATGGAGGACGGCAAAAAACGGCAGAAGGTTCTTCCCATGCCCTCACACAGGGGTCCTAAGATCAGGCACAGAGATAAAGGAAAACAGCAGCCTCAGTCCAAGAAAGCGAAGAGAGGATTGAGCAGGAAGGACAGAAAAGCATCGTTTTCGCTGGAGAAACCCAACCAGAATAAGAAACAGAGCGCTAAACCAGTGAAGAGACATCCCCGGAACAAAGACAATGACCGCTTTGACAATCTGGTGGCGCAGTACAAGAATAAACTCCTGGGTGCCTCTAGCTCTAAGGGTTCTCTCATCAAAAAGAGCAAATGGTTCAgctgagtgtgtaagtgtgtaagtgtgtaagtgtgtaagtgtgtaagtgtgtaagtgtgtaagtgtgtaagtgtgtaagtgtgtaagtgtgtaagtgtg

Function

NR:

description
RNA-binding protein 28 isoform X2

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K14573 NOP4, RBM28; nucleolar protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250936.3 True 2736 mRNA 0.47 19 8904735 8919978

Neighbor

gene id symbol gene type direction distance location
LOC103031618 NA coding upstream 1776 8897577 ~ 8902959 (+)
LOC103030146 impdh1,impdh1a,LOC108442450,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC106561215,LOC103030146 coding upstream 33337 8844976 ~ 8871398 (+)
LOC103043520 NA coding upstream 68122 8831429 ~ 8836613 (+)
LOC111194761 NA coding upstream 78277 8820102 ~ 8826458 (+)
prpf18 prpf18,LOC107671164,LOC107719961 coding upstream 339237 8555188 ~ 8565498 (+)
LOC111194832 NA coding downstream 190116 9110094 ~ 9114054 (+)
LOC111194762 NA coding downstream 194001 9113979 ~ 9116076 (+)
lrrc4 lrrc4.2,LOC103033525,LOC108442864,LOC108263937,LOC107559378,LOC107594935,LOC107738417,LOC107672593,LOC107673147,LOC107723939 coding downstream 374595 9294573 ~ 9299415 (+)
LOC103035018 grm3,LOC108444204,LOC108263977,LOC107671160,LOC107665551,LOC107559415 coding downstream 1545811 10465789 ~ 10529492 (+)
cmip cmip,LOC107684659,LOC106573687,LOC106560887 coding downstream 1675424 10595402 ~ 10628479 (+)
G157210 NA non-coding upstream 9794 8892090 ~ 8894941 (+)
G157069 NA non-coding upstream 221632 8680809 ~ 8683103 (+)
G157064 frmd4a non-coding upstream 296714 8603589 ~ 8608021 (+)
G157054 NA non-coding upstream 336272 8568244 ~ 8568463 (+)
G157052 NA non-coding upstream 337067 8566429 ~ 8567668 (+)
G157224 NA non-coding downstream 28847 8948825 ~ 8949097 (+)
G157226 NA non-coding downstream 46193 8966171 ~ 8966371 (+)
G157305 NA non-coding downstream 423853 9343831 ~ 9344700 (+)
G157311 NA non-coding downstream 473324 9393302 ~ 9393516 (+)
G157312 NA non-coding downstream 584096 9504074 ~ 9507133 (+)
G157055 NA other upstream 333858 8569930 ~ 8570877 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 1298067 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 1473167 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 1733110 7093507 ~ 7171625 (+)
G156188 NA other upstream 3747335 5157154 ~ 5157400 (+)
G157383 NA other downstream 1020851 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 1652765 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 1780810 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 1831721 10751699 ~ 10754698 (+)
hipk2 hipk2,LOC107722467 other downstream 2111087 11031065 ~ 11143471 (+)

Expression


Co-expression Network