lrrc4 (lrrc4.2,LOC103033525,LOC108442864,LOC108263937,LOC107559378,LOC107594935,LOC107738417,LOC107672593,LOC107673147,LOC107723939)


Basic Information

Item Value
gene id lrrc4
gene name lrrc4.2,LOC103033525,LOC108442864,LOC108263937,LOC107559378,LOC107594935,LOC107738417,LOC107672593,LOC107673147,LOC107723939
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 9294573 ~ 9299415 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250938.3
GAACACTGCATCAAACCAATGCACTGCTCTGAGCGGGATGCGTCAGCAGTACATTCACGTTTTCACTGAAGGACAAAAGGAGGAGATAGAGCGGAGCGGCTCGGCTGCCTGCAACCCCATCACGtaaagggaaaaagagagagagagtgagagagagagagagagagagagagagaggagcccTGAATGCCAGGGAGGGGGTGAGGACCACTGCTGCCTCCACTGCTGCCGTTGCCGCTGCCGTCGCCGTGGACAGGATTCACCTCTGGGTGCATGTGTGTAAgcctctctccctcgctctctctctcctcttggCTGCTTGcttgcctgcctgcctgccttcCCGCCTGCCTGTCCGGCTTCCACCGCAGACCCCCAGCCAGCCCAACAGACTCATGAGCAGGAGCGGAAGAACTGCCACAACTTACTACCTCAGGATGCCAGAATAAAGGAATACTGCAAGATCTGCACCGGGGGGACAAACTACAGGACCCTCTTCAAGACAGCTCTCAGAAATCAGCCATACATCATGCAGCAAGATCAGTTCCTCCCTTTCTGActctgagagaaagatagaggaaccgagtgagagagcgagaagtgagagagggagaaagcgcaagagagagagggagtgagagagagagagagagaaagagagagagcgatcgcaagagagagagagcttcacTGCTGCGCTGCTGCTCCCCCCTTCCCTTCCCCTTCCTGCTCTTGCACTACCACCCCCAAGCCCCCCTCCGGAGAAATTGACGGATTATTGCTAACTGTGCACGCGGCAGTCTGCTGCTGCTACAGCGACGGGCAGGAGAGCACGGCGAGTTAAAAAAGCAAGACGGAATGACCGCAATGTGCATCTGTTGGCCTTTTTTGTATTCATCAGCGCACGGCTAATCAACTGGACAAGTGGGGGGTGTGCTCCGGCAAAACTGAGAAAAGGGTTAGTCtttaacagagagaaaaaaaactgaaaggaCTTGGGATTTCATTCCCtactttactatttttttctgtctttttcttcgcttcatttttttaatgcgcTTGCAGTTTGGCGATGGAGTCTTGTGAAAAATGTTCAGTGGTTTTCAGCGTCAGCTTCCAAGGACAATCAGTGGGGGAGCTGAGAGGAGATCTCTTCCAATCTGACTGGATCCATGCACCTGCTTAGCTCAGTGGGCCTTACCCCCTTGAACCAGTTTCTCTAAACGCTGCTTCTCTCTGGAATTCAAAGGAGCCATTTTGTCAAAGCAGTTCCCAGTCCAGTTTACTTTTCTCAAAGAAATATAGCAAAATGTTCCCGAGGTCTTGTTGAGACGGACCGGTAAGCCTGAgcgaaacaaaaaaaaaagggacagGAGAATCCCTTTGAATTCCATACTAATGAGCACCATCCTGCACTGTCGATGGAAAACAGAAGCAGTGTCTTGCTCAAACCAGGGTAGGGCCACTGTTCTCCGTTCCCGAGCCGAATCCCCACACGATGTTGAATTATGAACGCGCCACATCATGAGTCTCTTGTGGCAGGTAACTGTGCACCGTGCCTGGAACGCAGCCCTGCTCTGTGCAGTCTACCTCATGGTGCGAGCGTGGAGTGTGTGCGCCGCCCCCACCGAACCGCAGAACTGCCCAGCCGTCTGCTCCTGCAGTAACCAGTTCAGCAAGGTGGTGTGCACCAGGCGCAGCCTGGTCCGAGTGCCCTCTGGCATCCCCGCCAACACACGGCACCTCAACCTCATGGAGAACAGCATAGAGATAATCCAAGCTGACACTTTTCGACACCTCCACCACCTGGAGGTGCTGCAGCTTGGCAGGAACTCCATTCGGAAGATTGAGGTGGGGGCCTTCAATGGCCTCACCAATCTCAACACCCTGGAGCTGTTTGACAACCGGTTGACCGTAATCCCAAGTGGCGCTTTTGAGTACTTGTCGAAGCTGCGGGAGTTATGGCTCAGGAACAACCCTATTGAAAGCATACCGTCTTATGCATTCAACCGAGTCCCCTCGCTCATGCGATTGGATTTGGGAGAACTGAAGAAACTGGAGTATATTTCGGAGGGTGCTTTTGAGGGATTATACAACTTGAAATACCTAAACCTTGGAATGTGTAATCTGCGGGAGATGCCTGTTCTCTCCCCATTGGTGGGTCTGGAGGAGCTGGAGATGTCAGAGAACTACTTTCCGGAGATCAAACCCGGATCCTTCAGGGGTCTAAAGTCCCTCAAAAAGCTCTGGATTATGAACTCCCGGATCACCACCATGGAGAGAAATGCTTTTGATGATGTCACAGCCTTGGTTGAGCTCAACCTGGCACATAATAACCTTAGCTCTTTGCCCCATGATCTTTTTGCACCCTTGAGTTACCTGGTCGAGCTGCACTTGCACCATAACCCCTGGCGGTGCGACTGCGATGTTGTGTGGCTGGCCTGGTGGCTGAGAGAGTACATCCCTACCAACTCCACGTGCTGTGGCCGCTGCCACACCCCTGCACACCTGCGAGGGCGTTACCTAGTGGAAGTGGACCAGACTACCTTCCAGTGCTCAGCTCCCTTCATCCTGGATGCTCCACGGGACCTTAACATCTCTGCGGAGAGAGTTGCTGAGCTCAAATGTCGTACAGCCCCCATGTCATCTGTCAGATGGCTGCTGCCCAACGGAACGGTGCTGACCCACGGCTCCAATCACCCCCGGATATATGTGCTCAATGACGGAACTCTAAACTTCTCCAACGTGCTGGCATCTGACACAGGTGTCTACACCTGCATGGTCACAAACATGGCCGGAAACTCCAACGCATCGGCCTACCTGAATGTGAGTGCAGCCGAGCTCAACACCTCTGAGCACCTGAGCTACTTCACCACAGTGACCGTGGAGGTGGTGGAGCCCACGTCAGAGGAGGTGATCAAACCGAAGACGGTCACGGCCTCGCCCTCCGTCTTCCAACCTGTGTTTATCTCGACACCAACCGTGCTGCTGCAGACACCCCGACAGGTTAGCGTGCCAACAGTCCGAGGAACAGTGCGCCCACCTGCCAGCTTAGACGAGGTGATGAAGACTACAAAAATTATCATTGGCTGCTTTGTTGCCGTCACGCTGCTTGCCGCGGTCATGCTGATCGCTTTCTACAAGCTGCGCAAGCGGCACCAGCAGAGGAGCACAGTGGCAGCTGCCAGGACTATAGAGATCATTCAAATGGAGGAGGACGTTCCTCCTGCCACCTCGGGGACGAGTATACCAGGAGAGGGCGGGATGGTGCTGCCAAGCCTGAGAGATCGTAACAGCACCTACAAACCCAGCTACAGCACCTACAAACCAGCACACTCGGCACCCTGGACAGAGAACAACATTGGCAACTCTCTGCACCGCTCTCGGCCCACCACCATCAGCACCATCCCTGAACCCTACTTGATTAAAACTCACACCAAGGAGAAGGTACAGGAAACCCAGATCTAACGTTCCCTTCTCattctcctccctctcctccctTTTTTCTGTTCCTCATGAAAACATGCAATAGAATGCACAAAGAAAAGACAGCGATTACTTTTGTACCCAGTGCAAAAACGAGACTGTTTTTCTTGTACAtgcttatatataaatatatgaatataaatatataaatgaatccACTATGGGATGGTAAGAGAAGCagattatataaaaatgaaaaatgaatttaaactaTTTTCTAACTTGTAACTTCTATTTAAGATGGAGATACATGAAGATACTGACGTGACACTGCGAATGAGGGCAGACTTGTTTGAAAAAGGGCACTCTGTGGTTTTTAGACAATGCTAGATAGGCTCCAGTAAAATTTCAACAAAAACTGTCCCCTAAAGAAGACTCTTTACAGGTTTATCTTGTAAAAGCAACAAGAATTTGTTATGTGCCAAATGTTATACATGCAATAAAAGAGTTTGGGTTTAATGAGATATCAGAAATcacaaaacactgcaaaatataGTCTATACTGAGGCTGGGCAGGAACGTTCTTCTGAGTCTTCTGTTTAGCAGCTATCAGCCAAATGGGTTTGGTCTAATGTGCTATTTTGCAGTGAGTGGTTAACTCTGTATTTGCCGAATAGACAGGCTGCTTTTTTTCACTGGTCTCGCTACGAGAAGCATTGAGGCAGTTTGGATCTGGTTATTACTCTTTTCCCTTAATATCCCTTTTGACTTAAACAAATTAAGTGAACCCCAGTAGTTCTTTCTGGCCACTTCCTTCTTCCTTCCCTCCTCTACTATTGGTTGCTTTcccacattcttttttttagagaCTTCCCAAATGCTTCTTAAGGCTTGAGTGGCTTTTAGggctaaaatatacagtacgTAGTAAATACATTACAACAGTGGCCTCAGATTAGTAGTGTAAGGGCTCaacaggatgtttttttttttttttttgcgattgCGATTAACGATGCTGAGATAAGTTGACAAGACACAAAGGTTTTCTGCAAGTTAACATTAACATGACTGCTTAcgattttttctttctttctttttcatttatgTTGAGAAGGATCTACAAATGAATGTGTGCATTATGGGCTGTCCTCTATGGTGATCGTTCAAACAGTGAATTTTCCTTTGTTCCTTATTTTGAGCAACACTATTTTTATGAGGAGTCTACAGAGGttacaacaataaaacatttggtttgtatttctCTAAACTCAA

Function

symbol description
lrrc4.2 Predicted to be involved in modulation of chemical synaptic transmission and synapse organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in glutamatergic synapse and plasma membrane. Predicted to be integral component of postsynaptic density membrane. Orthologous to human LRRC4 (leucine rich repeat containing 4).

NR:

description
leucine-rich repeat-containing protein 4

GO: NA

KEGG:

id description
K16351 LRRC4, NGL2; netrin-G2 ligand

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250938.3 True 4704 mRNA 0.49 2 9294573 9299415

Neighbor

gene id symbol gene type direction distance location
LOC111194762 NA coding upstream 178497 9113979 ~ 9116076 (+)
LOC111194832 NA coding upstream 180519 9110094 ~ 9114054 (+)
rbm28 NA coding upstream 374595 8904735 ~ 8919978 (+)
LOC103031618 NA coding upstream 391614 8897577 ~ 8902959 (+)
LOC103030146 impdh1,impdh1a,LOC108442450,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC106561215,LOC103030146 coding upstream 423175 8844976 ~ 8871398 (+)
LOC103035018 grm3,LOC108444204,LOC108263977,LOC107671160,LOC107665551,LOC107559415 coding downstream 1166374 10465789 ~ 10529492 (+)
cmip cmip,LOC107684659,LOC106573687,LOC106560887 coding downstream 1295987 10595402 ~ 10628479 (+)
tmem5 tmem5,LOC107722461,LOC107738400,LOC107587049,LOC107559810 coding downstream 1458825 10758240 ~ 10764110 (+)
srgap1 srgap1,srgap1a,LOC107670373,LOC108264626,LOC107684655 coding downstream 1466600 10766015 ~ 10901559 (+)
LOC103045650 NA coding downstream 1603538 10902953 ~ 10912967 (+)
G157226 NA non-coding upstream 328202 8966171 ~ 8966371 (+)
G157224 NA non-coding upstream 345476 8948825 ~ 8949097 (+)
G157210 NA non-coding upstream 399632 8892090 ~ 8894941 (+)
G157069 NA non-coding upstream 611470 8680809 ~ 8683103 (+)
G157064 frmd4a non-coding upstream 686552 8603589 ~ 8608021 (+)
G157305 NA non-coding downstream 44416 9343831 ~ 9344700 (+)
G157311 NA non-coding downstream 93887 9393302 ~ 9393516 (+)
G157312 NA non-coding downstream 204659 9504074 ~ 9507133 (+)
G157334 NA non-coding downstream 285791 9585206 ~ 9590572 (+)
G157387 NA non-coding downstream 728104 10027519 ~ 10027906 (+)
G157055 NA other upstream 723696 8569930 ~ 8570877 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 1687905 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 1863005 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 2122948 7093507 ~ 7171625 (+)
G156188 NA other upstream 4137173 5157154 ~ 5157400 (+)
G157383 NA other downstream 641414 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 1273328 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 1401373 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 1452284 10751699 ~ 10754698 (+)
hipk2 hipk2,LOC107722467 other downstream 1731650 11031065 ~ 11143471 (+)

Expression


Co-expression Network