fam107b (fam107b,LOC107722469,LOC107738407,LOC102787157)


Basic Information

Item Value
gene id fam107b
gene name fam107b,LOC107722469,LOC107738407,LOC102787157
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 11231961 ~ 11266320 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250962.3
CTATGGGTTTCTCTCTACTACTGAACTGTGCACATGAGAGCTGGGGAAGCGCCGCAGACACACCTTAAACGTGGAAAGTGCTCCAAAACACGAGCCCATGTGTTTCCAGCAGATCCCCGTCCCTTCCAGCTGAACTCGCGCGTGTTGTGTGGAGTGGAGAAGTGTGCGGAGTGGAGGAGTCGGTGTTGGGgtCTGGATCAGTCGGAGTTGACGGAGAGATTGCCTCGTGTGCGGAGCATCATGGCAGAGCCGGATTACATGGATGGAGACTGTGACGAACTCATTAAGCCCAAGAAACTCATCAACCCTGTGAAAACCTCCAGAAACCACCAAGACCTACACAGAGAACTCCTCATGAATCAGAAGAGGGGCCTGGCACCTCAGAACAAGCCCGAGCTGCAGAAAGTGAtggagaagaggaagagagaccAGGTGCTGAAAGCTCAGAAGGAAGAGCAGGAAGCTCATAAGAAGCAATCAGATTTGGAAATTGAGCTCATGAAGAGACAGCAAAAACTTGAACAGCTGGAGTTGGAGCAGCAGAAGAatgaggaggagcaggagaacACCCCGGAATTTGTTAAAATGAAGAGCAATCTAAGAAGAACCAAGCAGGAGGTGGACGAACAGGAGCGCACCACCTAGACACACTATGGGGGGTTTAAACGAGTCCATGGCACATGAAAGCATGGCAACCGGACTGCAGATTTGTGGGGATTCCCTGGTGTTCCTGCTCCCTGTGTTCCTGTGAAAACCGTGAATGGTTCCTATTGCCGACCTGCAGACACGACCAGTATTCACTTACCCTAACCCCTAAACACCGGCAGCAAACAGAGGGATTGAAATGAAAAATGCGCACTCAGACACAAAGGCACAGTCTCCCCGTCACTGGCTGGTTGGCTGGATGGCGGGCTTTGGTGGACTTGCATGGCAGGACGGACAGAACACACGCAGAGTTTTTCCAATTcgttttctatctctctctttctttagcttatcttaattttcattttttctgctgtttcttgttttcttttttaacttattttcagAAATTCAAGTTTAGAGGGACACTGGATGGACTTGTGCAAGCCTAAataagtgtttgtttttttcagttttgccttggaatgatgctgatgatgaggGGTTTTATGAGGACTTTATACCCTCCTTTTGGTTGatgatcagaaaaaaaagaaagaaaaaaatatgaatatggatTCTCAACAGTTCAACCTTTGGCTGTGATGTACAGAtgtttgctttattttgttgttttaatcttCATATCTGTGCACTCCTTCTAAGCTACATCTATTTTAAGCAATACTAGAACTAGGTTGGTgtgtttttgaatatttttgtttttctttttttacaaataaatttgttATAAATACAGTTTAGTTGCAATGGTGTAGAACACTGTGTTGAGGCactcttgtatttttttccacaccTGAGTAGTAATTGTTGAGTGCAATCAGGAAGGTCTAGGaaagaaatgcattttttgttagtTCAGTATTGAAGACTCACAGTCTAATGTATAGATTTGAGCCAATGCCCAACCACTCGTGCTCCCTTTAATTCAGAAAAActtcttttaataaatattattttgtcatgtt
>XM_007250963.3
TTTCCCACTGAAACTGAATctgaatcagcagcagcagagccggTGTGGAGCTCCACTCCCTCAGTGTTACTCAGACTAACAGGAATACATTCACCTCCGCTCCAggctttctcttctctttagcTCTTTAACACTCAGACACCATGACCACCATGTTCAGGTACCCAGTGTTTCCAGTCCTGCCAGgtCTGGATCAGTCGGAGTTGACGGAGAGATTGCCTCGTGTGCGGAGCATCATGGCAGAGCCGGATTACATGGATGGAGACTGTGACGAACTCATTAAGCCCAAGAAACTCATCAACCCTGTGAAAACCTCCAGAAACCACCAAGACCTACACAGAGAACTCCTCATGAATCAGAAGAGGGGCCTGGCACCTCAGAACAAGCCCGAGCTGCAGAAAGTGAtggagaagaggaagagagaccAGGTGCTGAAAGCTCAGAAGGAAGAGCAGGAAGCTCATAAGAAGCAATCAGATTTGGAAATTGAGCTCATGAAGAGACAGCAAAAACTTGAACAGCTGGAGTTGGAGCAGCAGAAGAatgaggaggagcaggagaacACCCCGGAATTTGTTAAAATGAAGAGCAATCTAAGAAGAACCAAGCAGGAGGTGGACGAACAGGAGCGCACCACCTAGACACACTATGGGGGGTTTAAACGAGTCCATGGCACATGAAAGCATGGCAACCGGACTGCAGATTTGTGGGGATTCCCTGGTGTTCCTGCTCCCTGTGTTCCTGTGAAAACCGTGAATGGTTCCTATTGCCGACCTGCAGACACGACCAGTATTCACTTACCCTAACCCCTAAACACCGGCAGCAAACAGAGGGATTGAAATGAAAAATGCGCACTCAGACACAAAGGCACAGTCTCCCCGTCACTGGCTGGTTGGCTGGATGGCGGGCTTTGGTGGACTTGCATGGCAGGACGGACAGAACACACGCAGAGTTTTTCCAATTcgttttctatctctctctttctttagcttatcttaattttcattttttctgctgtttcttgttttcttttttaacttattttcagAAATTCAAGTTTAGAGGGACACTGGATGGACTTGTGCAAGCCTAAataagtgtttgtttttttcagttttgccttggaatgatgctgatgatgaggGGTTTTATGAGGACTTTATACCCTCCTTTTGGTTGatgatcagaaaaaaaagaaagaaaaaaatatgaatatggatTCTCAACAGTTCAACCTTTGGCTGTGATGTACAGAtgtttgctttattttgttgttttaatcttCATATCTGTGCACTCCTTCTAAGCTACATCTATTTTAAGCAATACTAGAACTAGGTTGGTgtgtttttgaatatttttgtttttctttttttacaaataaatttgttATAAATACAGTTTAGTTGCAATGGTGTAGAACACTGTGTTGAGGCactcttgtatttttttccacaccTGAGTAGTAATTGTTGAGTGCAATCAGGAAGGTCTAGGaaagaaatgcattttttgttagtTCAGTATTGAAGACTCACAGTCTAATGTATAGATTTGAGCCAATGCCCAACCACTCGTGCTCCCTTTAATTCAGAAAAActtcttttaataaatattattttgtcatgtt
>XM_022679601.1
CCGGAAAAGGACTGCTTGTGAAAgtCTGGATCAGTCGGAGTTGACGGAGAGATTGCCTCGTGTGCGGAGCATCATGGCAGAGCCGGATTACATGGATGGAGACTGTGACGAACTCATTAAGCCCAAGAAACTCATCAACCCTGTGAAAACCTCCAGAAACCACCAAGACCTACACAGAGAACTCCTCATGAATCAGAAGAGGGGCCTGGCACCTCAGAACAAGCCCGAGCTGCAGAAAGTGAtggagaagaggaagagagaccAGGTGCTGAAAGCTCAGAAGGAAGAGCAGGAAGCTCATAAGAAGCAATCAGATTTGGAAATTGAGCTCATGAAGAGACAGCAAAAACTTGAACAGCTGGAGTTGGAGCAGCAGAAGAatgaggaggagcaggagaacACCCCGGAATTTGTTAAAATGAAGAGCAATCTAAGAAGAACCAAGCAGGAGGTGGACGAACAGGAGCGCACCACCTAGACACACTATGGGGGGTTTAAACGAGTCCATGGCACATGAAAGCATGGCAACCGGACTGCAGATTTGTGGGGATTCCCTGGTGTTCCTGCTCCCTGTGTTCCTGTGAAAACCGTGAATGGTTCCTATTGCCGACCTGCAGACACGACCAGTATTCACTTACCCTAACCCCTAAACACCGGCAGCAAACAGAGGGATTGAAATGAAAAATGCGCACTCAGACACAAAGGCACAGTCTCCCCGTCACTGGCTGGTTGGCTGGATGGCGGGCTTTGGTGGACTTGCATGGCAGGACGGACAGAACACACGCAGAGTTTTTCCAATTcgttttctatctctctctttctttagcttatcttaattttcattttttctgctgtttcttgttttcttttttaacttattttcagAAATTCAAGTTTAGAGGGACACTGGATGGACTTGTGCAAGCCTAAataagtgtttgtttttttcagttttgccttggaatgatgctgatgatgaggGGTTTTATGAGGACTTTATACCCTCCTTTTGGTTGatgatcagaaaaaaaagaaagaaaaaaatatgaatatggatTCTCAACAGTTCAACCTTTGGCTGTGATGTACAGAtgtttgctttattttgttgttttaatcttCATATCTGTGCACTCCTTCTAAGCTACATCTATTTTAAGCAATACTAGAACTAGGTTGGTgtgtttttgaatatttttgtttttctttttttacaaataaatttgttATAAATACAGTTTAGTTGCAATGGTGTAGAACACTGTGTTGAGGCactcttgtatttttttccacaccTGAGTAGTAATTGTTGAGTGCAATCAGGAAGGTCTAGGaaagaaatgcattttttgttagtTCAGTATTGAAGACTCACAGTCTAATGTATAGATTTGAGCCAATGCCCAACCACTCGTGCTCCCTTTAATTCAGAAAAActtcttttaataaatattattttgtcatgtt

Function

symbol description
fam107b Is expressed in central nervous system; forebrain; lens; myotome; and retina. Orthologous to human FAM107B (family with sequence similarity 107 member B).

NR:

description
PREDICTED: protein FAM107B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250962.3 True 1634 mRNA 0.44 4 11231961 11266320
XM_007250963.3 False 1630 mRNA 0.43 4 11255575 11266320
XM_022679601.1 False 1467 mRNA 0.42 4 11245824 11266320

Neighbor

gene id symbol gene type direction distance location
LOC103046273 NA coding upstream 25216 11146162 ~ 11206745 (+)
LOC103040136 NA coding upstream 307539 10917452 ~ 10924422 (+)
LOC103045650 NA coding upstream 318994 10902953 ~ 10912967 (+)
srgap1 srgap1,srgap1a,LOC107670373,LOC108264626,LOC107684655 coding upstream 330402 10766015 ~ 10901559 (+)
tmem5 tmem5,LOC107722461,LOC107738400,LOC107587049,LOC107559810 coding upstream 467851 10758240 ~ 10764110 (+)
nup205 nup205,LOC107684652 coding downstream 2695 11269015 ~ 11293673 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding downstream 184602 11450922 ~ 11461645 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding downstream 764816 12031136 ~ 12333915 (+)
utp4 utp4 coding downstream 1249142 12515462 ~ 12524112 (+)
mlycd mlycd,LOC107583902,LOC107722462 coding downstream 1517479 12783799 ~ 12800375 (+)
G157557 NA non-coding upstream 213148 11018415 ~ 11018813 (+)
G157546 NA non-coding upstream 349493 10881730 ~ 10882468 (+)
G157540 LOC103039511,LOC100702099,LOC100707594,LOC105905159,LOC108412826,LOC105889141,LOC102291458 non-coding upstream 475299 10755079 ~ 10756662 (+)
G157523 NA non-coding upstream 531589 10700157 ~ 10700372 (+)
G157513 NA non-coding upstream 571534 10659793 ~ 10660427 (+)
G157703 NA non-coding downstream 43695 11310015 ~ 11314603 (+)
G157761 NA non-coding downstream 201606 11467926 ~ 11468139 (+)
G157764 NA non-coding downstream 221740 11488060 ~ 11489560 (+)
G157766 NA non-coding downstream 225919 11492239 ~ 11492486 (+)
LOC111194766 NA non-coding downstream 227295 11493615 ~ 11501536 (+)
hipk2 hipk2,LOC107722467 other upstream 88490 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 477263 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 517979 10700788 ~ 10713982 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other upstream 640438 10572743 ~ 10591523 (+)
G157383 NA other upstream 1290156 9940829 ~ 9941805 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other downstream 1073686 12340006 ~ 12366770 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other downstream 1469199 12735519 ~ 12741002 (+)
LOC107197649 LOC108416831 other downstream 2467625 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 2707501 13973821 ~ 13980025 (+)
G158369 NA other downstream 3783902 15050222 ~ 15050718 (+)

Expression


Co-expression Network