LOC103026111 (LOC108434138)


Basic Information

Item Value
gene id LOC103026111
gene name LOC108434138
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22077478 ~ 22079758 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250996.3
agagagagagagagagagagagagagagagagagagagcacatttcCCAATTTCTGAGTCTTTTGGATGTCTGTGAGGGAATTTCTATTGCAGATTGACTACCTTCGATCGTGAGGATGACCCGAAGTTTTCCACAGCTGCTCATAGACTTCCTGACCGAATGGCAGATCCACCACAACCGCCTGGTGACCAAAGATGGCCACTGCAACATTGAGTTCATCAACGTGAGGTACAGAAGCAAGTACGCCTACATGCTGGACATCTGGACCACTTTGGTGGAGATCTCCTGGGCTTTTGTTATGTTCTTCTTCGTGGCATCCTTTCTTATCACCTGGTTTGTGTTCGGACTTCTCTGGTACTGGATCGCCCACGACCATGGCGACCTGGcttggcagcatcctgtggattTCACGACTGCTTGTGTAGTTAATGTCACTGGCATGACCACCGCCTTCCTGTACTCTTTGGAGACGCAGACCTTTATTGCCTATGGTTGGCGGGCGATCACTTCCAACTGTCCGAGTGCCATCACTGTCTATGTGTTCCAGGTCATCCTCGGCACGATAATCACCTGCTTCTGGGGTGGTGTGGTGACGGCGAAAATCGCCTTACCAAAGAGACGAGCCAAGGCCATCATGTTCAGCGAGATGGCCGTCATCTGTGCCAATCACGATGCCCTCTGTTTGAAGATACGGGTGGCCAACATCCGCAAATCGCTGATGATTGGAACCCAAATTTATGGTAAACTGATCAGAACCAAAGTCACGCCAGAAGGGGAAACGGTCATCATGGACCAGGTCAACATCGACTTCAGTGTAGAATCGGGGAAAGAAAACATGTTCTTCATCTCTCCACTCACCCTGTACCATGTGATCGACAAGACAAGCCCCTTCTTTGAGATGGCAGTAGATAATCTACACCAGCAGGACTTTGAGCTGGTGGTGTTTCTGGACAGTGTCGCCGAGTCCACCAGCTTCTCATGCCAAGTACGGACGTCCTACGTCCCTCGAGAGATCATGTGGGGCTACCAGTTCCTGCCCATCATCTCCCGCAGCAAGGAGGGGAAGTACCGCGTGGACTTCTCCAACTTTGCCAGGGTGGTACCAACATCAACCTCGCACTGTGCTTACTGCTTCTACAATATTAATGGACACCCTCCTCCTCCCAGATATGGTGCTTGCAATGAGGGGTTTGAAATGACTGAAACTAGTGGCCAATAGTGCTGGAAATCAATCAATACAAGGAAACTGTAAAATTTGAGAGAACTACCAAAATGCTACTTTACTCTTCTTGCATATGTTATAAGGCATATTTGATGTCATCTTCACTGACCTAGTATCGAGTATAGAATGAATGTGCCTTTGTGTTTATATGAGTTTCTTTCTTTATGATGTATTTACAAAGTTGTTGAAATGATTTAGTTTTTATAGTTGTACaccttgtaaaaaatatttgttaattATGTAATACGTTCATAagaattcattaaaataaaaacttgcatTAAATTA

Function

NR:

description
PREDICTED: ATP-sensitive inward rectifier potassium channel 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250996.3 True 1511 mRNA 0.46 2 22077478 22079758

Neighbor

gene id symbol gene type direction distance location
LOC103025486 fli1,LOC107692484,LOC106612965 coding upstream 15668 22000660 ~ 22061810 (+)
LOC103031832 NA coding upstream 377757 21631760 ~ 21699721 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding upstream 616099 21457356 ~ 21461379 (+)
LOC103034933 LOC108431189,LOC101061116 coding upstream 705894 21355119 ~ 21371584 (+)
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding upstream 821518 21251704 ~ 21255960 (+)
LOC103026427 NA coding downstream 1436 22081194 ~ 22084499 (+)
LOC111194835 NA coding downstream 10805 22090563 ~ 22094253 (+)
LOC103027502 NA coding downstream 125399 22205157 ~ 22233055 (+)
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding downstream 154534 22234292 ~ 22260071 (+)
snrpa snrpa coding downstream 202936 22282694 ~ 22287641 (+)
G159904 NA non-coding upstream 158484 21918749 ~ 21918994 (+)
G159896 NA non-coding upstream 226937 21847617 ~ 21850541 (+)
G159891 NA non-coding upstream 324479 21752505 ~ 21752999 (+)
G159868 NA non-coding upstream 568645 21508595 ~ 21508833 (+)
G159864 NA non-coding upstream 585727 21491389 ~ 21491751 (+)
G159919 NA non-coding downstream 28317 22108075 ~ 22109190 (+)
G159925 NA non-coding downstream 46786 22126544 ~ 22127679 (+)
G159936 NA non-coding downstream 86163 22165921 ~ 22166376 (+)
G159939 NA non-coding downstream 98446 22178204 ~ 22178561 (+)
G159961 cunh19orf54 non-coding downstream 192939 22272697 ~ 22276949 (+)
fam174b NA other upstream 1002905 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1065684 21009302 ~ 21011794 (+)
G159728 NA other upstream 1340429 20736598 ~ 20737049 (+)
G159666 NA other upstream 1890559 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 3501041 18525528 ~ 18576437 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 68086 22147844 ~ 22152785 (+)
G160134 NA other downstream 773654 22853412 ~ 22854081 (+)
G160306 NA other downstream 2039371 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 4244062 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4537504 26617262 ~ 26755313 (+)

Expression


Co-expression Network