LOC103026427


Basic Information

Item Value
gene id LOC103026427
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22081194 ~ 22084499 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250997.2
CACAGCAGCTGTAGTTTACAGGTAAACACCGTATCCAGCGTCCGGCCGCTCCAGCAGGAGGGAGGAGGATCCGCAGAAACAACCGGGTCACAAACAGAGTCTGAAATCCTTTACTGGGGCAGCATTAGATTTACAGGACGATCAGAGCATAATGCAGCACACACTGCATACAATCTCTTTAAGGACCAATTAAAATGATGCTCATTGTCTTTACTTTATATGATTTCTGCATTCAGGAGTCTGAAAACAGCCTGAGAAACAGCTACTAAAGATTAAACATATCCACATATCTCAACTATGACGCGAACCTTCCCACAGCTTCTCAGAGATTACCTGGACGAGCGCCGTATTAACAAAAACCGCCTGGTGACCAAAGATGGCCATTGTAACATTGAGTTTGGCAATCTGAGGTACAGCAGTCGCTTTGCCTACGTGCTAGATATATGGACCACCATCTTGGAATTCCGCTGGAGCGTCGTCCTCTTCCTGTTCTCCGCCGCATTCCTCCTCAGCTGGTTCATTTTTGCGCTCCTCTGGTTTTGGATCGCGAACAATAATGGAGACTTATGGTGGCAGAACCCTTCACCTGATCATGAAGCTTGTGTAATGAACGTCTACGGCTTGACCACAGCCCTCTTGTTCTCGTTCACATCGCAGATGACCATCGGGTACAGCGTTCGAGTCATTAATCCAATCTGTCCTGGTGCCATCATCCTCCTCGTTATCCAGACTCTTTTTAGTACGGTTGTAAAAGGCTTCTGGTGTGGAGTGGTCATCGCCAAAATGTCCCTGCCCAAGAAAAGAGCCAAAACCATTCATTTCAGCAAGAAAGCGGTCATCTGTCCTAAAGATGGCGCCCTCTGTTTGCAGATACGACTGGCGAATCTTCGCAAAACTCTGCTGGTTGGAAGCCAAATCTACGGAAAGCTGCTTAGAACCACAGTCACGGCCGAAGGCGAAACTGTAATCATGGACCAGATTAATATCAATTTCATGGTGGATGCTGGCAAGGACAACCTCTTCTTCGTCTGCCCTTTGACCCTATATCACATCATTGACAGGACGAGCCCCTTCCTAGAGATGGCTGTGGACAATCTGCAACACCAAGAATTCGAGTTAGTGGTATTTCTGGCTGGCACAGATGAGTCAACCAACTTCTCCTGCAATGTCCGAACATCGTACATCCCGCGAGAGATCATGTGGGGATACGAGTTCTTCCCCATCATCTCTCGCAGCAAAGATGGAACCTACTCTGTGGACTTCTCCGAGTTCGATAAAGTGGAACCTGTACCAACTCCACACTGTGCCATCTGCTTCCACAACGAGAAAGCCCATCACTTTAACCCAATAGACGGCATCGATAACCAAGTGTTTGAAGAAATTGAAGTCCCTCACCAGGGTGAATTTAGTCAGGAGGGAGGCCAAACATCGGTTAGTTTCCGAACTGTTCGCAAAAAATCCTAAATTTCTGTCCAGTTGTTTAAAACATCTACAAAAATGTTTGGTCCCACTTGttattaagtgtttttaatagatGTCTTGTTAcactttaacattaaaatgatctttttactgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250997.2 True 1577 mRNA 0.46 2 22081194 22084499

Neighbor

gene id symbol gene type direction distance location
LOC103026111 LOC108434138 coding upstream 1436 22077478 ~ 22079758 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding upstream 19384 22000660 ~ 22061810 (+)
LOC103031832 NA coding upstream 381473 21631760 ~ 21699721 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding upstream 619815 21457356 ~ 21461379 (+)
LOC103034933 LOC108431189,LOC101061116 coding upstream 709610 21355119 ~ 21371584 (+)
LOC111194835 NA coding downstream 6064 22090563 ~ 22094253 (+)
LOC103027502 NA coding downstream 120658 22205157 ~ 22233055 (+)
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding downstream 149793 22234292 ~ 22260071 (+)
snrpa snrpa coding downstream 198195 22282694 ~ 22287641 (+)
LOC103028656 LOC108264789,LOC108429874 coding downstream 217855 22302354 ~ 22392575 (+)
G159904 NA non-coding upstream 162200 21918749 ~ 21918994 (+)
G159896 NA non-coding upstream 230653 21847617 ~ 21850541 (+)
G159891 NA non-coding upstream 328195 21752505 ~ 21752999 (+)
G159868 NA non-coding upstream 572361 21508595 ~ 21508833 (+)
G159864 NA non-coding upstream 589443 21491389 ~ 21491751 (+)
G159919 NA non-coding downstream 23576 22108075 ~ 22109190 (+)
G159925 NA non-coding downstream 42045 22126544 ~ 22127679 (+)
G159936 NA non-coding downstream 81422 22165921 ~ 22166376 (+)
G159939 NA non-coding downstream 93705 22178204 ~ 22178561 (+)
G159961 cunh19orf54 non-coding downstream 188198 22272697 ~ 22276949 (+)
fam174b NA other upstream 1006621 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1069400 21009302 ~ 21011794 (+)
G159728 NA other upstream 1344145 20736598 ~ 20737049 (+)
G159666 NA other upstream 1894275 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 3504757 18525528 ~ 18576437 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 63345 22147844 ~ 22152785 (+)
G160134 NA other downstream 768913 22853412 ~ 22854081 (+)
G160306 NA other downstream 2034630 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 4239321 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4532763 26617262 ~ 26755313 (+)

Expression


Co-expression Network