snrpa (snrpa)


Basic Information

Item Value
gene id snrpa
gene name snrpa
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22282694 ~ 22287641 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251004.3
TGATGTTTAGAGAGGCGGGACTTCCTGAGAGGGTTACGTTCTGTTCCCGTGCGGCGTGTTGGTGGTTGGCTAACAGCCTTGTTACTATAAGCCTTATTTGTTGGTTTCTGACCGCTAGAGATGGCTGGCCAGGAGCTCCGTCTGAATCACACCATTTACATCAACAACTTGAATGAGAAAATCAAGAAAGATGAATTAAAGAAATCCCTTTATGCCATTTTCTCCCAGTTTGGGCAAATCCTGGACATCCTTGTGTCCCGCACTCTGAAGATGAGGGGTCAGGCTTTCGTCATTTTCAAAGAGGTCAACAGTGCCTCCAACGCTCTGAGATCTATGCAGGGTTTCCCATTTTATGATAAACCCATGCGCATTCAGTATGCCAAGCAAGACTCTGACATTATCGCGAAGATGAAGGGAACGTATGTGGAGCGGGATCGTAAGAAGGAGAAGAGGAAGCCTAAAAGTACTGAAGCCGGTGCATCAAAGAAGGGTGTGCCAGCTGCTGCCCCTGGCATGGCTGGAGTTCCTGCTGCTATGCCGGGAATGCCTCCTATGAGTCAGGCTCCTCGTATGATGCCAATGCCAGGCCAGCCTCCTTACATGCCTCCTCCTGGTATGATGCCACCACCTGGTATGGGTCCTGGACAGATGCCCCCAGGTGCTATGCCTCCTGGTCAGATGATGCCAGGGCAAATGCCTGGCCAGATGCCTCAGCAGGTTTCGGAGAACCCACCCAACCATATCCTGTTCCTCACCAACCTGCCAGAGGAGACAAACGAGCTTATGCTCTCCATGCTGTTCAACCAgtTCCCAGGGTTCAAAGAGGTGCGTCTTGTTCCTGGTCGTCACGATATCGCCTTCGTGGAGTTCGATAACGAGGTGCAGGCAGGAGCTGCCAGGGAAGCACTACAGGGCTTCAAGATCACTCAGACCAACGCCATGAAGATCTCCTTCGCCAAGAAATAACCCACACTGTCCTGAATCCAGATCAGAACTCTACAGGAACATCCTATCTGAGCTGCCTTCTTATCTTCTGAGCCCTGCATCTGTGTGAGGAGATGCAGGGTCCAGAAGTGTGAGCAGGGCTGTTCATCAACTGTTTAATCACATTCAGGGTCAAGAATCTGATAAATTCCGGTTATTAATGGTAATGTCAGTGTTGTACATAAGAACAGTCATTATTATAAGTTGAGTGAAAGGTAAGGACTCTTGAATGCCCTCAGCACGAGTTGTTTATAGTTTGGAATGTGTTTCCCTCCCTGTTCCACTCCGTTATCAGGAGGATTGGCCGGAGTTTGTAAGTAGCTTTTGTTTTATACatgatttttttgcttttgtgttAAAGCATTGCACCCAGAGTCTGGATCCACCAGACATCATACCTGGagcttttgttttaattaaagacgttcttacaaaaacaca

Function

symbol description
snrpa Predicted to enable U1 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of U1 snRNP. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPA (small nuclear ribonucleoprotein polypeptide A).

NR:

description
U1 small nuclear ribonucleoprotein A

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0017069 snRNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K11091 SNRPA; U1 small nuclear ribonucleoprotein A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251004.3 True 1425 mRNA 0.48 7 22282694 22287641

Neighbor

gene id symbol gene type direction distance location
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding upstream 22623 22234292 ~ 22260071 (+)
LOC103027502 NA coding upstream 49639 22205157 ~ 22233055 (+)
LOC111194835 NA coding upstream 188441 22090563 ~ 22094253 (+)
LOC103026427 NA coding upstream 198195 22081194 ~ 22084499 (+)
LOC103026111 LOC108434138 coding upstream 202936 22077478 ~ 22079758 (+)
LOC103028656 LOC108264789,LOC108429874 coding downstream 14713 22302354 ~ 22392575 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding downstream 435079 22722720 ~ 22727446 (+)
LOC103026853 LOC108429884 coding downstream 440892 22728533 ~ 22736629 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding downstream 525894 22813535 ~ 22816398 (+)
LOC103027426 LOC103027426 coding downstream 604831 22892472 ~ 22893301 (+)
G159961 cunh19orf54 non-coding upstream 5745 22272697 ~ 22276949 (+)
G159939 NA non-coding upstream 104133 22178204 ~ 22178561 (+)
G159936 NA non-coding upstream 116318 22165921 ~ 22166376 (+)
G159925 NA non-coding upstream 155015 22126544 ~ 22127679 (+)
G159919 NA non-coding upstream 173504 22108075 ~ 22109190 (+)
G160015 NA non-coding downstream 21264 22308905 ~ 22378490 (+)
G160051 NA non-coding downstream 272195 22559836 ~ 22561902 (+)
G160041 NA non-coding downstream 289277 22576918 ~ 22582171 (+)
LOC111194780 NA non-coding downstream 334705 22622346 ~ 22622773 (+)
LOC111194779 NA non-coding downstream 335198 22622839 ~ 22623307 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 129909 22147844 ~ 22152785 (+)
fam174b NA other upstream 1208121 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1270900 21009302 ~ 21011794 (+)
G159728 NA other upstream 1545645 20736598 ~ 20737049 (+)
G159666 NA other upstream 2095775 20185516 ~ 20186919 (+)
G160134 NA other downstream 565771 22853412 ~ 22854081 (+)
G160306 NA other downstream 1831488 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 4036179 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4329621 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4617603 26905244 ~ 26907627 (+)

Expression


Co-expression Network