itpkc (itpkc,itpkcb,LOC107596863,LOC107758549)


Basic Information

Item Value
gene id itpkc
gene name itpkc,itpkcb,LOC107596863,LOC107758549
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22234292 ~ 22260071 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251016.2
AGTACGGAATGCAGAATGGGCCAAACCCTCCGCGCTTCTTTTCAGCCTGCGATCAGAGCGCGCGGCGGCAGCGGAGGAGAGGAGCGGTCAGACCGGAAtcacatgaaaaacaggcagCAGCTGCCCCGACTCCGCGCGCACCGGCGAGCCACGGACAGGCACAGGGATGTGTTGGAGGACTGCGGGGAGATAATCGGCCGGAGGAAGGGGCGACAGCACGGGGCGGACTCTGCCGGGGACGGTCGAGGCTCCTCCGTGGGGAGAGCGCTGAGACCGCGGCCCGCCCGGGCGGAGGAGCTGGGGGCGGGGAGCGACAATGAGCGGGACACCGGGGCCATGGAGAGCAGCTCCGCGTCGCGGCTGAAGGACAGCCTCCGAGTCCCCTCCGCTGTTATTAACATGACCAGAGACCTTCCGGTTACGGAGACTACCGACACGCGGCGGACAGGCTCCGGGACTCGGGCGGGACCAGGAGGAGGGGACCCGGCGGAGGAGCTCGGTTTGGGGGATTACCCGAGTTTTCCCGGCACTATTCCCCAGCTCATCATCACCCGCGAGCCGAGCCCCAGCCGCACCGAGCCGCTGGAGCTGCCGCGGCGGGGAGACGAGTCGCCATGCTCGGACAGCGGCTGCGGGGGCTCCCCGGTGCCTTACTTTTCCCTCCGCAAGCTGTCCAGCTCCAGCTCCGCCGGGCTTTCATCCGCCTCTTCATTCGAGGAGTCCGAGGACGACGTGACGGGCAGCGACGCGGAGCCCGCGGCTCTGTCCCCCTGCCTGTTCGGGAGTCCGGAGGAGCTGACCGGGGCAAAATCGTGGAGGAAGTTAAAGAGCATGGTACATTTCTCGCCCTTCGTCGTGTCCTTCAAGAAGCGCTACCCCTGGGTGCAGCTGGCCGGACATGCAGGTAGTTTCCAGGCTGGTGAGGATGGTAAGCTGTTGAAGCGGTATTGTGAGTGTGAGCAGCAGTGCCTGCAGAAGCTGATGAGTGATACCCTAAAGCCATTTGTGCCCGGCTACTACGGCGTTGTCCAGCGAGACGACCAGGAATACAACCTGATGGACGACCTGCTGGCAGACTTCGACTCTCCATCCATCATGGACTGTAAGATGGGCAGCAGAACGTATCTGGAGGAGGAGCTGGTGAAGGCTCGTGAGCGGCCTAAGTTGAGGAAGGACATGTATGAGAAGATGGTGGCAGTGGACCCGGACGCACCGACTCCAGAGGAGAGGGCACGGCAGGCTGTTCTGAAACCACGATACATGCAGTGGAGAGAAACCCTGAGCTCCACAGCCACGCTCGGCTTCCGCATCGAGGGCATCAAGAAAGCGGACGGCACATGCAACACCAACTTTAAAAAGACAAAGCACAGAGAGCAGGTCATGAAGGCCCTGGACGACTTTGTAGACGGAAACAAGCAGATACTGAGGAGCTATCTTCAGAGGTTAAAGGAACTGCGCAGTGGGCTGGAGACATCGGAGTTCTTCAGATCACATGAGGTGGTGGGCAGTTCTCTGCTGTTTGTGCACGACGCTTCGGGACAGGCCCGGGTCTGGATGATCGACTTCGGGAAGACGGTCCCTCTGCCTCCACACCAGACCCTGGACCATCGCACTCCCTGGGCAGAGGGCAACCGTGAGGACGGCTACCTGTGGGGCCTGGATAACTTGGTTGAAATCCTGGGTGCCATGCTGTCGGACACAGCCTCGTAACAACTCTAGGGGCCCAAACACCGGTCCTGCTGTTACAGGGTCTGGAATTAAGAAAGGCCGgagtggtggagagagagaaacggtATATCGGTGTACCGGTGTATCGAACTCTCTCTTTCACCAGAGAGGAAAGAGGATGCTTAAGGGCTGGATAAGCCACGCCCACGGCTCTGCATTGCAGAACAGTCGGCGGGAACTTTTGATGAGAAGGAGGGACGGAAATGCTGGAGTCGAGACCAATCATTAGACTGGGCAGACTGGTGATTAGTCACTCAGCATGCATTTTGACTGTCTTATCTGCTCATCTGCCTTCATTCTGGGACACATTCTCATCCGGCAATAATGCAGAACCGTATATGCAAAACTGGCAATACACCAAACCCTGCTCCTGgaccaaagcaaaaaaaaaaacaaaaagagaccCGTTCTTACATTTATCCTAAAGATGGGTGTCTCTGAAAGTGACCTTATCAGACAATCTCTGGACATTTTTTTGGTTATTGTAAGACGAAAGCTTTTATAAGCAtactttctttcctttttatgCTTAAGTATAATGCAAATAACACTAGAACactggaaatatttttattttccatttgtGGATCATCTctttatagtatttttatagtaatgtaaatagtttaatttaattttatgctAAAAGACTTCCTTTTTTTCTATACGTCATAATTTTTTTACTGCCTGTTTCTGTACAAGATTTGACAATTAGGCACATTTTATAGATATGCGATATTCCCCATGGTTGAATCACATGGTTGAATACCTAAAATGCTCTCAAGAGAAATGGTTATTACATAATCATAGTTTATGCATACTGCACTATTTGGAAGATTTAACTAAGGATTTTATTACTAGTTTAGGTCTGTTGCTCATTTAGATGTGAGGTTTAGTTCTTTAATTCTGTAAAACACAGGTTCACAGTATCAGACTGAAGTGACTTAAATGTGATTGTTTGCCTTAATTTGACAGATTAGTTTTTTAAGGGCTTAGTGGACATGTTAAATCAGATCAAATTTTTCttgaatcagatttgagtcacctTGAAACATATCCAaggtgactcaaatctgatttaagccccaatcagatttttttacatGTCTAAATTGTGTCTAGATTATAGTTTGATAGTCTGGActgtcagaaaccacatgaaattAGAGTTCTGCAAATCAGATCCAAACAGTGATTGACGTGCAGTATGAAACAGCTCCAAACAGATATGTTCGTGATGTCCAGACAGGCAAATCCAATCTGACCACttataaaatttaaatgcagtctgaacacaaATGTGACTCTAGATCTGATTCCCATCCAGTTTGTGGACAtgcatcatttatttaaattgttgcCTGTACACATGTGCATAGGACTGTAGTACATCATTAACCAACaccagtgttgtgctgaattctgcctcCTTGTCAGAATATGATTCCAGCATAGTGTAAACATAAGCATAAGCATTTCTGTTGAGAAATatctattaacatttttattaacaaGTTTTCCTTCACAACAAACAACAGTATCACAGTGTAATGGGAGTCTGATTGTGGCAGGGATTGGAATTCTGCATAACACTATTAGAGCAGCAAACAACAGTGGATGCTTAAACATATGTGTGGATTACTGagatttagctttaatttaataatggtACCAGGGCATGACCAGGTGCAGTTCTTTCTATGTTTTAAGATATTGCAGCAGTGTTAATTTCACCTACTCTTGAGAGGTTGGAATGGTGTACTGGCACAGTAATGGATGTCCACTTCACTTTTAGAGTGGCTTCCCTAGATTGCTCACAATTTTGGTGGATAATCAGAATTTGAGGGTGGAGGGCTTGTTATCTTGACTCGTGTGTTAGATGCACTGAATGTCTTTCAGTAAATCTGTGAATCCAAAGAAACTGGATCTTTTGTGTACGAAATTATTTTGGAGCTCAGGAACAATGACTGTGACAATGCTGTGTCTTATTGTGCTTTTCCACTGCATGGTACCCACACTACTTGACTCGACTCAAgtcttctctgtttttttttttttttttttttttttttttttttatcttttccagTTCCAAGGCAAATTTGGTCCCTTGTACCTGGATACGAGCACTTTTCACAATTTGCTCGCTTATGGTTCCAAGCAAGCCTAGTAGGAACTAAGCCCTGAATCATCCCTAGCCCTAATGTTTGATAGGGAGCGAGAAAAACTAATACCATACATTGGAAAATTGGCATGACTTATCAATAAGGTATGACCTATTGAATTACTGAAGCTGAGAACACCAATACACTTATACACTTGCTTATTAATGCAGCAAAATCTGTTACGCCAGGTTAACACTACATGATTTAATGCTAAGGGTATATGTGTCTACACGTAGGTTTCAACGTTGGATAAATTGGCATATGGTCTACGCCATTGGGCTAGAGATATACTTGCTATTTGGCCATGGAAGCCTCCACTATTGAACTGAGGTTCAATTACAGTTTTAACAACATTTTAGATcacaggtaaataaaaaaaaaatcctcatgCACCGTTTGTAGTATTTGGCACCATAACTCacaaaataattcatttttatctTGTTCTGGCTACTGTGCTTGCTCAGATCTCCTCATCGAGGGGTCCCCTAATTAATATAATCTCTGCAAGTAGCCTTTCTTGAAAACTTTCCATCATTTAGTAACTGTTCAGTGGCTGCAGTTGCCCCCCTTCCCCTAGCATTTTTGtggaaagcaccaccaacacacCAAACAGATAGATACAGAAAATGCAAGGCAGCCATCAAGGGTATGCAAGCACATAGATAAAAGCAAATATATCTCTACCCACAGGGGTATGTGGCTAAAGTGTATGGTATTCATACACTGGACTTGTGTTTGAATCATACAACCATCTGAAAACTCTTGACAAAAGTGgcgtagtgtgaacctggcagaAGCACTGCTGTTTTTCGTGTTTCATGTTCTACTGCCTGCAGCTCCACCATCTCAATCTTCCCTGTTAGCGTCACAGACCTTCTCAGGTTGGTGtttgttatatatttgttttcggAAGGCTGCCAGTCTATCGTGTGCTTTATTTCCTGGAATTGGTTTCTGGCATTTGAAAtttatattaactggaaaattcTGGCCctgttcttctttttgttttgttttgttttgagtCAGTGATCCACGACCACATGATTCTACTGTATTCTATCCTTGACCAAGAAGTATGTAAATCCTGTATTTATTCTCAGTTCTCTCATGAACTACTCAACCTGAGATTAAATTTGTTTAGATAAACTAAA

Function

symbol description
itpkcb Predicted to enable inositol hexakisphosphate kinase activity. Predicted to be involved in inositol phosphate biosynthetic process and phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in hatching gland; nervous system; neural crest; otic vesicle; and somite. Orthologous to human ITPKC (inositol-trisphosphate 3-kinase C).
itpkc Predicted to enable inositol hexakisphosphate kinase activity. Predicted to be involved in inositol phosphate biosynthetic process and phosphatidylinositol phosphate biosynthetic process. Located in nuclear speck.

NR:

description
PREDICTED: inositol-trisphosphate 3-kinase C

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity molecular_function

KEGG:

id description
K00911 ITPK; 1D-myo-inositol-triphosphate 3-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251016.2 True 5050 mRNA 0.46 7 22234292 22260071

Neighbor

gene id symbol gene type direction distance location
LOC103027502 NA coding upstream 1237 22205157 ~ 22233055 (+)
LOC111194835 NA coding upstream 140039 22090563 ~ 22094253 (+)
LOC103026427 NA coding upstream 149793 22081194 ~ 22084499 (+)
LOC103026111 LOC108434138 coding upstream 154534 22077478 ~ 22079758 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding upstream 172482 22000660 ~ 22061810 (+)
snrpa snrpa coding downstream 22623 22282694 ~ 22287641 (+)
LOC103028656 LOC108264789,LOC108429874 coding downstream 42283 22302354 ~ 22392575 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding downstream 462649 22722720 ~ 22727446 (+)
LOC103026853 LOC108429884 coding downstream 468462 22728533 ~ 22736629 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding downstream 553464 22813535 ~ 22816398 (+)
G159939 NA non-coding upstream 55731 22178204 ~ 22178561 (+)
G159936 NA non-coding upstream 67916 22165921 ~ 22166376 (+)
G159925 NA non-coding upstream 106613 22126544 ~ 22127679 (+)
G159919 NA non-coding upstream 125102 22108075 ~ 22109190 (+)
G159904 NA non-coding upstream 315298 21918749 ~ 21918994 (+)
G159961 cunh19orf54 non-coding downstream 12626 22272697 ~ 22276949 (+)
G160015 NA non-coding downstream 48834 22308905 ~ 22378490 (+)
G160051 NA non-coding downstream 299765 22559836 ~ 22561902 (+)
G160041 NA non-coding downstream 316847 22576918 ~ 22582171 (+)
LOC111194780 NA non-coding downstream 362275 22622346 ~ 22622773 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 81507 22147844 ~ 22152785 (+)
fam174b NA other upstream 1159719 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1222498 21009302 ~ 21011794 (+)
G159728 NA other upstream 1497243 20736598 ~ 20737049 (+)
G159666 NA other upstream 2047373 20185516 ~ 20186919 (+)
G160134 NA other downstream 593341 22853412 ~ 22854081 (+)
G160306 NA other downstream 1859058 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 4063749 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4357191 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4645173 26905244 ~ 26907627 (+)

Expression


Co-expression Network