LOC103040340 (LOC108410554,LOC107566291)


Basic Information

Item Value
gene id LOC103040340
gene name LOC108410554,LOC107566291
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 551929 ~ 563776 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251567.3
GCAGGCTTTAGTGTGTCAgcatttcactctctctctctctctctctctctgctgtgtgGATCTGGAAGATGGAGTTAAAGGAGTTTTGCTTAACTGACAGCTTTCCATTCCTCAATCAGCAAAACAGTCTGTTGGACCCTTCATCTACTGATGACCCCCCATCTCCCAGAGAGACAACGATTAAGGCGGACCCCCTCAGCCCCCCGTTTACTGCCCCGTTCAGCCCCAGCAGCACCTCAGACAGCAGTGCGTACAGCCTGTTCTCTCAGGGTCACTCTCTGGACCCGGATTCacccagctccagcagcacagcCACCTTTAACCCCGCCCACTACAGCACAGAGGAACACAGTCTGCAGATAACAGCCCAAACACACCCCGCCCTCAGCCGGGACTACATCCCCAACCTCAACCCAGGACCCAAACGCCTCTGCCTGGTCTGTGGAGACTTCGCGTCCGGCTACCACTACGGCGTGGCTTCCTGCGAGGCCTGCAAGGCCTTCTTCAAGAGGACCATTCAAGGAAACATTGAGTACAGCTGTCCGGTGGTGAACGAGTGTGAGATCACAAAGAGACGGAGAAAAGCGTGTCAGGCCTGCCGCTTTCAGAAGTGTCTGAGAGCCGGGATGATGAGAGAGgGTGTGCGTATGGATCGTGTAAGAGGAGGAAGGCAGAAGTATAAAAGAAGAGTTGAGTCCAATCTGTCCGTCTTCATCAAAACACCCTACTCACATGCAGTCAAATCTGTCCGAAATAAGGTCATTTCCCAGCTGTTGGTGTCCGAGCCGACTCCACTGCGTGCGTCGCCTGACCCCTCCAGCCCGGACACAGACCTCAACACCCTGCTGACCTTATGTGACCTTCTAAACagggagcttctggtcatgatCGGCTGGGCCAAACACATTCCAGGGTTCGCTGCGCTCTCTCTGGTGGATCAGATGGCGCTGCTGCAGAGTGGCTGGATGGAGGCTCTGctgatgtgtgtggtgtggaggtCTCAGGGTTGTTCTCAGGAGCTTCAGTTTGCGGCGAACCTGCGGCTGAACGAAGCTCAGGCCCGGGCGGCTGGACTGCTGGACCTTTATACACCTCTGAGACACCTGACTGAGAAATACAGACAGCTGAACCTCAGCCAGGAGGAGGCCGTCACGCTGAAGGCCATGGCCCTCGCCAACTCAGATGCTGAGAACGTGGAGAGCGGGGAGGCGGTGCTGAGGTTTCAGGACGGTCTTCATGAATCCCTGCAGGACTACGAGAGCGTCCAGCATCCCGCTGAGCCTCACCGCGCCGGCCGGATCCTCATGACCCTCCCCCTGCTCAGACAGACCGCCCAGAGAGCCGTCCAGTGCTTCTGCCGCCTGCACATGGAGGGACACATCCCCATGCACAAGCTCTTCCTGGAGATGCTGGATGCCAAGATTTAGACCAGATCTCATATTGCTCCCTATTCCATACCATTTATCACACTACATGAGACACAAGGATCATGTGGTGTTTTACACTCATGTCCTAAAGAGGGAGCTGGTTGGAGTGCATCTTTAACAGGGTCAGAATGAGTGCAGATGGACATCTATACCACTAAAGCTCTGGAGGTTTTCTGTGTGTATGAATTAAAGATTCATCCACATTCAGCTCCAGGCTAAAAAGCACTGAAAGAGCTGCAACAAAGTGAACAAAACTTGAACAAAAGTGAAGGAAGTagaattttgtatttaattcatttacaaatgtaatatttaattgtagtagtagctttaatctaatttatttaagttataAGATAAGTTATGTTTAAATTgtcctgtttatttattctattgttTAAGAAATTAGGTTTAATTTTAGTGTTTGTGTTGGATATGGTTGATGTTTTTATCCatataacaaaacaatacaaaacaataaaactgcaTCAGaagcaaatatatttaaatgacagTATAATCACGCCACAACTCTTCagctttactatttattttgttttatttatttataaaatatgctTTGCATTTTGGCTATTTATAcgtaaataaactatttttgcaATTTTGATTTGTGTGTCTTTGTTAATCATTTGTTTCGTGTTGTTGATCCCATACAAAAGCAAAGTTAAGGAGTTTAAAAAAGgcatcttttaaaaaaacaaatattcacaaaaaattgcTTCATATGGTACTGTTTATAtacatgttatatatttatatatttttagtattagtCAATCATTTGTCAAAATGAAATGTATCAAAATGAACAAACATCATATTCATATTTCTTTTGCATGGAAACCAATGGAAaacaaaagaatgaaaaaatatgaatacaaaagaaatattaaattcaatACATATCAAAAATGCATCTATGGTAAAAAATGCATACAGCTTTCAGTATTTATATGATACAGGTCAGCAAAAGCATTCctcataataaacaatatttcttCTACTGCAGTAAacaagttaaatatataatatataaactttCACTGATGTTTCAAAATGATCTGCATAACACTGCTGGGGATGAACACATTTAGAGAGTGGGAATTTTGCTgtgaaaattgcattttttttttatttaacacagtggtggtgaatcatagccattttattatattgtattcaCTATCCAGCCCTCCCAGTGCATATAAAATGCTGTTGATAAAATAGTGGTAAagtttcta

Function

NR:

description
PREDICTED: estrogen-related receptor gamma-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251567.3 True 2689 mRNA 0.44 7 551929 563776

Neighbor

gene id symbol gene type direction distance location
LOC103033531 NA coding upstream 14051 421528 ~ 537878 (+)
LOC103034482 NA coding downstream 115219 678995 ~ 681903 (+)
blvrb blvrb,LOC107692505 coding downstream 140579 704355 ~ 713021 (+)
sertad3 NA coding downstream 150133 713909 ~ 718705 (+)
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding downstream 363943 927719 ~ 952480 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 851631 1415407 ~ 1457526 (+)
G155290 NA non-coding upstream 54789 493411 ~ 497140 (+)
G155250 NA non-coding upstream 152315 395765 ~ 399614 (+)
G155233 NA non-coding upstream 191232 344963 ~ 360697 (+)
G155234 NA non-coding upstream 220655 330837 ~ 331274 (+)
G155229 NA non-coding upstream 222765 327423 ~ 329164 (+)
G155283 NA non-coding downstream 24066 587842 ~ 590204 (+)
G155300 NA non-coding downstream 27898 591674 ~ 593996 (+)
G155328 NA non-coding downstream 131750 695526 ~ 703112 (+)
G155332 LOC108443044 non-coding downstream 156519 720295 ~ 724186 (+)
G155336 NA non-coding downstream 185058 748834 ~ 749156 (+)
G155206 NA other upstream 398666 149347 ~ 153263 (+)
LOC103044527 NA other downstream 539674 1103450 ~ 1106792 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other downstream 623370 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other downstream 639965 1203741 ~ 1223350 (+)
G155776 NA other downstream 2174585 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 3047242 3611018 ~ 3614491 (+)

Expression


Co-expression Network