sertad3


Basic Information

Item Value
gene id sertad3
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 713909 ~ 718705 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251568.3
CTTTGGCGGTGTTTCCGTGTAGCGCTTGAATCGCGAGCGGGAAAAGCGCCCAGCAGTGAATCAGTGCGGTTCAGATCTTCGCGCGGAGCTCCGAGATTTCTCCGTTTTTCAGCGATTGAAGACTTTAATCAGATTTAATCAGCTCTGAATCCGGTCTGTGGATCGCTTATAACATTTACAGTGGAACAACAATGGTGGCGCGGGGGCTGAAGCGTAAGCTCCATGACAGTGAAGACAGCAGAGGCTCCTTCTGGGAGACCCAGCTGCAGTCTGTCCTGGACATCTCCCTGGATAAGTACCAGCGTGACCAGGCCCTGGTGGAGCCCAGCTTACTCCGCTCCGTTCTCATCAATAACACTCTCCGGCAGGTCCAGTCAGAGGTCAGAACCTCTTTAACTGAACCCACTAGTGCTTGGAAACCACAGCCTCCTCCGAGGCCACAGCCTGAGTTCCTGTCCCAGCGAGAGATTGCTCCTTCTGGGCACAGTGCCTCCGCCTACTCCTTGGGGCTGCAAGAGAATGAGGACGACTTCATGGCCTGGTCCGCGGAGGAGGACTTTTCCCTGTCTTCAGCCATTTCTGCCATTCTGAAAAATCTAGACGCAGCTCTTGATGGTGGTTACAATCCTCCTCCTTCtactcttcttcctcctcctcctcagcgcACTCCATTAGCGTCTGTTGAAAATCTTCCAGGAGATGGAAAGTTCAAGCAGAACCTTGGCTTCACCCACATGATGGAAAGCTGCAGAACGTCCAGCGTAGGAACATCTGCCGTTGTGTCTGGCATCTTCCAGGAAAGCACCATAGATGACCTGCTGATGGACCTCGACACGTCAGTGTTTGGGAGAGAAATGAGCAGTTTTGCTCCACATACTTTCTCCTTTCCTGCGGATGAACTTATGAGATATCTGCCGTCTCTGTCCACTTCATCACCTGCACCATCCTCTTCCTCAGGTTCGAGGGAAATACACGAGTTGGAGCAGATAATGGACATACTCATACGATcctaacttaataataataataaaggcatTGTTGGTCCTGTCATCTGTAAAACTGCGCAGAAATGTACGTTATGGAGCGATATGAACATCTATACAGTTTGAGAAAATGTTCTAGAGATGGTATAAGGAGGACAGAACGCTGGTGAATATGTTAGAGAGTATTTAATAGCCCTTTTAAAGAATTTAGCAGTATTGAATATTATTGTCTGCTACTcacagtgtttacagtgttcGTTCACTACCTCACATGACCGATTTACAGATCTACAGCTGTGGCTCAATGAGTGTTTTGACAcaaatgcactgcaaaaaaacttaTTTCATCCTAGAGCTAGTCAGTATGCCTACTATTTTTCACTGTTTGTTAAAACTATTGTTAATAGCTATACTAATATTTTAGACCTGTTTTGCTTGTTTCAAGGAATTCTGTCTAGAGATAATTATCGCCTTAAACCTTCCTGAGACAAGccttattattaattaagtCAATTGTCAAATATATCACTAAACAAGTAAAgcacaaatgtacaaatgttgATTTTAAGAGATTCTTCATATTGGtgtcataataaaaatattagagaTATTGACTAGTAGGTTTTTTCACGTTTTTTGCAGTTTGCATGTTCATATTTCTATGACTGAAGATAATATTCAATGCAAATTTCTCTGTTCAGATCTGGACTGTtctaaatgttcagaaaaaaatcagtgtttttatatatatatatatatgttactgTTTTGATCCcgttatactgtatatctattgTTTAATTTACTATAGATGactttgtattttatgttttgttggaCTGCATAAGGTGTCCACTGTGATGTCTTGAAATGTTCCCTAAATGTTGAGGAAATGCACTTTGGTTTAATTTCAGGCCTGTAAATCGATGTTAAAGGGCCTGTCAGTGATTGGTTGTTCCACCCTAAGGTGGCCTGGTGGACTGTGTTCCTGTCTGTCAGTTTTTCTGTTGTAGTTGTTATGCAACCTAAACGCAATTAAGAGTGCTGAACTGTAAAACCAGACCTTTTTAGAGACCTACTTTGTCTTAAATCAGACAGATCATACTTGATAATTGTGTAATAAACACATTTGTGTGATTGTGAATATTGAGAAATGTGAGAAAAGTGTGTGTACTGGTTGTCAGCTCTACACTGTATAATAATGGTCTGTCTAAGACAGATGAAACATTATGGGTTAGTTCTACTGTTCCTGAAGGGAAATGTTGACACCTatgcaaaatattataatattactgtTACTATTGAACTTTTTCTAATAAACACTACCTGAATAAATT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0033554 cellular response to stress biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251568.3 True 2320 mRNA 0.41 2 713909 718705

Neighbor

gene id symbol gene type direction distance location
blvrb blvrb,LOC107692505 coding upstream 888 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 32006 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 150133 551929 ~ 563776 (+)
LOC103033531 NA coding upstream 176031 421528 ~ 537878 (+)
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding downstream 209014 927719 ~ 952480 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 696702 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 848410 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 933949 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 944273 1662978 ~ 1673194 (+)
G155328 NA non-coding upstream 10797 695526 ~ 703112 (+)
G155300 NA non-coding upstream 119913 591674 ~ 593996 (+)
G155283 NA non-coding upstream 123705 587842 ~ 590204 (+)
G155290 NA non-coding upstream 216769 493411 ~ 497140 (+)
G155250 NA non-coding upstream 314295 395765 ~ 399614 (+)
G155332 LOC108443044 non-coding downstream 1590 720295 ~ 724186 (+)
G155336 NA non-coding downstream 30129 748834 ~ 749156 (+)
G155357 NA non-coding downstream 96048 814753 ~ 816758 (+)
G155436 NA non-coding downstream 195691 914396 ~ 916240 (+)
G155457 NA non-coding downstream 296537 1015242 ~ 1034453 (+)
G155206 NA other upstream 560646 149347 ~ 153263 (+)
LOC103044527 NA other downstream 384745 1103450 ~ 1106792 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other downstream 468441 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other downstream 485036 1203741 ~ 1223350 (+)
G155776 NA other downstream 2019656 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2892313 3611018 ~ 3614491 (+)

Expression


Co-expression Network