CI01000012_12270454_12276521


Basic Information

Item Value
gene id CI01000012_12270454_12276521
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12270346 ~ 12276625 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12270454_12276521.mRNA
TTATATATTGGAGATTATGAGCCACATTTCATCCCAGTAATAATATTATTTCCATATGACATTGAAAAGTTTATTTTTCCGACCTGACTGCTTGTAGCAGCAAACAAGATGGCTGCCAGAGTCTTCAGGCTCCTTCAGAGCATAAACTGTCAAGCCTTTTACTCGATTTGTAGATGTTGGCATCCCAGCATACAGTGTAGCATGGACGTGCGTGCCCAGGGATATTACAGTACTGAGGAGGAGTTGTCTTACATGCTGCTTCTGGCTTCCCATAGAGACAGCCCTCCAAACTCAAACCTAATTAAAGTGAAGGCAGTGTCCGGGATCATTTCTCCGGCTCCCAAAAGTGTCGAAAAGAGAAAAGAAGAGTGGAGCAGCACAGCCCCGTCGGTGTTTGCGCAGCGCTACCGCTGCGTTTCCCTTGACTTGCCAAAGCTAACAGGGGCTGGATGTGGAGAGGCAAATTTGCCAGCGTTAACTCGGATAAACGAGCTTTTCATTCAAAGACGACCTTCTCGTCATAATCTCAGGCAGGGCTGTCAAGGCCTGGCCCCTCTCTTCCTGGATCACTTGCCCAGGTTTTTAACAGGAACCTAGGGGTCTGAGAAACATGGCGAAGGGGTGGGGGGTGTTTTTTTTTTTTTTTTTTTTTTTTTAGAATGGAGACCTGGAATGATCTGCATCTCAGGTGCCACGGCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12270454_12276521.mRNA True 701 mRNA 0.47 3 12270346 12276625

Neighbor

gene id symbol gene type direction distance location
CI01000012_12220568_12234927 NA coding upstream 35083 12219998 ~ 12235263 (+)
CI01000012_12173747_12212480 VCLA, VCL coding upstream 57061 12173388 ~ 12213285 (+)
CI01000012_12159352_12162539 NA coding upstream 107507 12158648 ~ 12162839 (+)
CI01000012_12128962_12130578 ITPRIP coding upstream 138219 12128446 ~ 12132127 (+)
CI01000012_12054427_12060390 TIAL1 coding upstream 209956 12054427 ~ 12060390 (+)
CI01000012_12292583_12371612 ADK, ADKA coding downstream 15958 12292583 ~ 12371612 (+)
CI01000012_12378120_12378419 NA coding downstream 101495 12378120 ~ 12378662 (+)
CI01000012_12381049_12417489 KAT6B coding downstream 103567 12380192 ~ 12418697 (+)
CI01000012_12440074_12465741 SLKA, SLKB, SLK coding downstream 163449 12440074 ~ 12466032 (+)
CI01000012_12489485_12490402 NA coding downstream 212662 12489287 ~ 12490431 (+)
G76318 NA non-coding upstream 101891 12168168 ~ 12168455 (+)
G76316 NA non-coding upstream 105114 12164961 ~ 12165232 (+)
G76315 NA non-coding upstream 105935 12164183 ~ 12164411 (+)
G76306 NA non-coding upstream 159700 12110427 ~ 12110646 (+)
G76299 NA non-coding upstream 193222 12076910 ~ 12077124 (+)
G76327 NA non-coding downstream 156274 12432899 ~ 12433158 (+)
G76222 NA non-coding downstream 157044 12433669 ~ 12435061 (+)
G76230 NA non-coding downstream 159406 12436031 ~ 12436325 (+)
G76244 NA non-coding downstream 160487 12437112 ~ 12437490 (+)
G76328 NA non-coding downstream 161069 12437694 ~ 12437915 (+)
G75533 NA other upstream 1124607 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2046059 10223697 ~ 10236276 (+)
G73578 NA other upstream 3902719 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4462491 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 6346041 5922385 ~ 5929186 (+)
G76385 NA other downstream 354130 12630755 ~ 12675666 (+)
G76374 NA other downstream 468906 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 738881 13029435 ~ 13038899 (+)
G76645 NA other downstream 1375234 13651859 ~ 13652234 (+)
G76656 NA other downstream 1426862 13703487 ~ 13739731 (+)

Expression


Co-expression Network