LOC103038575 (LOC108439020)


Basic Information

Item Value
gene id LOC103038575
gene name LOC108439020
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29152296 ~ 29159185 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251840.3
ACTGTATAAAAGATTACTGCTCTCAAGCACTGCAGCGCTTCATCCAAACACTGCAAATCTGACTCAACACCCCCAAACACAGAGAGCATCCAGCCTGAAGTCTGCTACTGGAGtTTCTCACTGACGTCGCTGTATAAAGTGAAAACCATGCCCCTGGCAGTCATACCATTGTTCGGCCCCATCTCCATCTCGGAGAGTCTGGTGGCGATGGTGGCGATATGTACGGTCTACCTCCTCGTCCAATTGTCTCGAGAAAGGATCCCTGCGGGTCTTAAGCTGCTTCCAGGCCCGCAGTCAATTCCAATCATTGGGAATGTGATGGAACTTGGGTTGAACCCTCACCTCAGCCTGACCACCATGAGCAAGCGATTTGGCAACGTCTTTAAGATCCACATAGGGACTCGACCCGTGGTGGTGCTGAGTGGCGGTGAAACTGTGCGGCAGGCACTCATCAAGCAGGGAGATGACTTCGCTGGACGGCCAGATCTGTTCAGTTTCCAATACATCAATAATGGCAAAAGCCTGGCCTTCAGCACAGATCAGGCTGGGGTGTGGCGCCATCGCCGTAAGCTGGCCCAGAATGCCCTGCGCTCTTTCTCTACACTAGAAGGCCAAACCCCTGAGTATTCCTGTGCCCTGGAGGAGCACATCAGCAAAGAGGGGCTGTACCTGGTGGAGAGACTGCGCAAAGTGACGAAGGCCGAAGGCTGCTTCGACCCCTTCCGCCACATTGTGGTCTCTGTGGCCAACGTCATCTGTGGCATGTGCTTCGGCCGGCGCTACAGCCACGACCATGAGGAGCTAGTGAGTCTGGTGAACCTGAGCGACGAGTTCGGACAGGTGGCTGGTAACGGCAACCCTGCTGATTTCATCCCCTTCCTCCGGTTCCTGCCAAGCAAGACCATGGAGACGTTTGTGGACATCAACAGGCGCTTCAACAAATTTGTGCAGAGGATCGTCAGAGAGCATTACGAGACTTACGATAAGAACAACATCCGTGATATCACAGACTCCCTCATTGATCACTGTGAAGACAGGAAGCTGGACGAGAACTCCAATGTCCAGGTGTCTGACGAGAAGATAGTGGGGATAGTGAATGACCTCTTCGGGGCCGGTTTTGACACCGTCAGCACTGCTTTGTCGTGGTCTGTGATGTATCTGGTGGCCTATCCTGAGATTCAGGAGAAACTTCATCAGGAGCTGATGGAGAAGGTGGGAAATGATCGTAAACCTTGCCTAACAGACAAAAACAACCTGCCACTCCTCGAGTCTTTCATTACGGAGATGTTCCGCCACTCCTCCTTCATGCCCTTCACCATACCACACTGCACCACAAAAGACACATCCCTCAATGGATACTTCATTCCCAAAAATACGTGCGTGTTCATCAACCAGTGGCAGATTAACCACGACCCAGATCAGTGGAAAGAACCCTCCATGTTCAACCCAGACCGCTTCCTGAGTGAAGACGGTGTCGAGATCAACAAGACTGAAGCTGAGAAGGTCATGGTGTTCGGTCTGGGAAAGCGGCGCTGCATCGGTGAATACATCGGCCGCTCCGAAGTCTTCCTCTTCCTCGCCATCCTCATCCAGAGACTAAAGTTCAGCAGCTTGCCAGGAGAGATGCCAGATATGACCCCCAACTACGGCCTCACCATGAAGCACAGTCGCTGCATGCTGACCGTCGCTCCGCGGCCAGGCTTCGAAGAATTCAGCTCAGAGAGTCTGGACTGAGCCAGATACTGCTGAGTTCAGAAAAGACAATAAGACAATGAGAGCTGCTTCTGTAACGATGACACTGTGGACAGTATAGACACTGTGTAGCATAGTGATGGTCATCATATGTTAGTGTCTGTGATAACTGACAGCATATTGATGGATATTATTGCATCAGATCTCTCTTACAGATGGAGATGCAGAATGTAGTCACGAGGCTGCTATGAGGGCAGGGCTGTTATTTACTAATTGTGGAATTCAGGCCAGTTTCTTAGAGTAGGTTTACTGCATTGTCACGAGGTCATGCATGATTTAGTTGCTGAGATGAAAGATAAGTAATTAAGAAGAATTTGGCATGTTTAGAGAATTAATGACCAATTTTCTAAAATAACCTAATTTCGAAAACATGGCTCAAGGTGTCTACATAGCAAATCTAGCCTTTTTTTGCAATTAATGAGCAGAGAACCCACATGAACCAACATGTTTTGGTAAAATGGTGCTAAATCTGTTTTAACTGTTATTTTGGAACTATTATGCACATAGATCTCATCCGTGAATTGACTAAAACATCCAAAAAGGTGAGCTTATGTTGGTACTTCTCATTTCAGAGATGTTCATTTAGAGATGAGACTTTAAGGCACATTACTACGTATGGTTAAAGTGACTAAAACATGTATAGAAAGCTGTATCATAtcatgtacatacatacatacatacagtacatacttatataaccaCATATGTAGTGCTGTAGTGACTAGGAGGCCACTCTGCTTAGTGCCTTATCTTTAtagtatttgtatatattttatatagtatgaAATGGTTTTATTGCTATGagaaaatttgtattttacaaGCTACAAACTTCTTTATGTTGTGGACATAACATTTtctatgaaaaacactgaagtaattttttgtaatatttaagcTCTATCCCAAAATGTGACCCATGTGCTGGTATTACTGACAAGCAGACTTCCTCGCGTGCCCCAGAATGTAGAAGCTTTGTACCTAAATTTTCTTTATTCCTCAAGGCTCTTAGATACAGCTCTAGGTATACATTAGAACTGCTATATTTTCAGTACAGCTATTCATTTGTGTAATATCTGTTCATTGCATATAATGAAGGAAGTCAGTCTTATTTTTtagatgtattttttattgacaCCAAGCTGTTGTTAAATAATGAATGCAGTAATGTACATTGTGCTCTGTAAACTTTGTAAGCTGTTGCGATGTTTGGCATATCTCTACAtggtgaaaaataaaactgaGAGAAATACACAA

Function

NR:

description
PREDICTED: cytochrome P450 1A1-like

GO:

id name namespace
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07408 CYP1A1; cytochrome P450 family 1 subfamily A1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251840.3 True 3009 mRNA 0.45 8 29152296 29159185

Neighbor

gene id symbol gene type direction distance location
LOC103023184 NA coding upstream 9106 29133628 ~ 29143190 (+)
LOC103022881 LOC108439021 coding upstream 89157 29018060 ~ 29063139 (+)
LOC103037946 LOC108439022 coding upstream 182901 28954717 ~ 28969395 (+)
arid3b LOC108439030,LOC108264089 coding upstream 293200 28768606 ~ 28859096 (+)
dhx36 dhx36 coding upstream 765879 28300719 ~ 28386417 (+)
LOC111194800 NA coding downstream 40264 29199449 ~ 29200211 (+)
csk csk,LOC108264088,LOC106562350 coding downstream 60281 29219466 ~ 29307913 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding downstream 211880 29371065 ~ 29391966 (+)
LOC103039409 NA coding downstream 239227 29398412 ~ 29401581 (+)
LOC103023825 tarsl2,LOC108413626 coding downstream 289965 29449150 ~ 29473681 (+)
G161313 NA non-coding upstream 262052 28889370 ~ 28890244 (+)
G161312 NA non-coding upstream 263170 28886972 ~ 28889126 (+)
G161314 NA non-coding upstream 265496 28886442 ~ 28886800 (+)
G161302 NA non-coding upstream 388253 28668173 ~ 28764043 (+)
LOC111194802 NA non-coding upstream 499987 28643321 ~ 28652309 (+)
G161414 NA non-coding downstream 43168 29202353 ~ 29202589 (+)
G161417 NA non-coding downstream 48778 29207963 ~ 29208290 (+)
LOC111194801 NA non-coding downstream 51079 29210264 ~ 29214735 (+)
G161425 NA non-coding downstream 173926 29333111 ~ 29354291 (+)
G161476 NA non-coding downstream 324329 29483514 ~ 29490820 (+)
G161331 NA other upstream 35501 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 393289 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 527511 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1355792 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2033032 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 1194501 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1695373 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1715853 30875038 ~ 30878327 (+)
efhb NA other downstream 2425561 31584746 ~ 31605490 (+)
G162017 NA other downstream 2909677 32068862 ~ 32148190 (+)

Expression


Co-expression Network