LOC103039106 (cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490)


Basic Information

Item Value
gene id LOC103039106
gene name cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29371065 ~ 29391966 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251842.3
TGACGAGTCGAGGAGGAGCGACCCAATCGGACCAGTGTGCGCGCGGAGCGGTGTGCTGAGCGGGGAGGGGGAGCTGTCCACGGCGAGCGGTGCTGAACGCGGGGAGCGCGCGCGGGGAGCTGTCCGCTGCGTGTGGTTCTGAAAGCGTGGACGTGCGTGGTGAGCGCTGTCCACTATTAGAGGTGCTGAAAGATATTCTTCTTCTGTAAAGAAGAGCAGAAGGACACGAGCCTGAGATCACTACAAGTTAAGAGCTGCACTTTCAGCTCTCGTGCTCTGGACAGCCTTTAGTGTTTATAgttcttttagtgtttttagcgttttttttccagaaagaGATAAGAGTTTAGGGGCCATGGCTTTCATGGTGAAGCACATGATCGGGGGTCAACTGAAGGACCTGACTGGAGGTTTGACTGAGGAAAAGCCTGAAGGGGACAAAGGCGAAGCTGCGGCGAAGGGGATGACCCAAGAGGAGTTCGAGCagtatcagcagcagcttgaggAGGAAAAGCAGGAGAGAGATGCCAACTTTGCCCAGAAGAAAGCGGAAAGGGCCACAGTCCGGTCTCACTTCAGAGACAAGTACAGGCTGCCAAAGaatgAGTTGGATGAAACACAGATCCAGGCTGCAGGGTCGGATGTGGAGCTGCCCACTGAGCTGGCCAAGATGATCGCTGAGGACAACCAAGAAGAGGAGCACAAACAGTCGGTCCTGGGGCAGCTCTCCAACATCCAGAACGTGGATATGGATCAACTGAAGGACAAAGCTCAGGCAACACTGGAGGAGCTGAAGAACTCAGCCGAGAAGTGTTCACTAATGTGATCTTTGttgtgatctctctctctttctctctctttctttctcttttcagctatgttcacattacaagccttcCTATTGCTGGAATGCACTCTTTCATATCTGGTCACTATCAGAATACctaaaaataaatcactttttaatgcttttaactcTTTAGGCTACACAGcctaatcactttttattttcacttttttatttcctgtgatgtatgtgtccaccctgtcataACAAGATGGATTTTAGTGAAAACCCTTTGATGAAAGATGctagatattttattataatgttctaaaaatatgttttaatatatgttttaccACAACAGGGTGGATAGTTTAATATTTAGCTTTGATAAATTTTAAgtgaaattattataattaattttcaAAGTGTCTTCagtttgtgatgtcactgatgtcaaaTTGTTACTTTCTCAAAAGGGCAGGGTTATCTGGGATCTGGGAATTCTTGGTCTTTTTCGGACAGTTTAAATACctcaaaattaaaaactatGCTCTGCATGTTACATTGAGCCCGACCCAGCTATTCTTGCAAAGACGATTGAGCTCGGTTGAGATTTCATGAAATATGGCAAAAGTAATCATGTGTTCCATGATGTCATACTTTCACTATCACACAAGAACCTCTTATTTCCAAAATGACAATTCCAAAGGAGAAAAAACAATTTCAtggaagtcaaagtaaaaatatGTTACGATAGCGATTAAGATTAAGATGACGATTAAGATGTTATTTCTAGCAAGTCCATTcatcattattttaatacaatgtaaagaaaacttCTCAGATTAACATTATGTCTGAACTACTTTCAAACAGAACATTTATTCTACACATTTTGGCAATATTTAACAAGTGATGCGTCTTACAATAAGATATACTTTTATTCCTTGTGTGATGAAAGTAGTTCAAATTAGATTCAAATGCGTTCACATTCAAGCAGAAAAAACGGATTGTTGTGGCACTAATCCAGTTTTTCTGCCTGAATGTAAACCCCATCTGATATATTCAaccttgtaatgtgaacatagcctctatctctatttatctctctttctgtctgttctgtTATTTCTCTTACACAAAACAcataacacacataca

Function

symbol description
cplx3a Predicted to enable SNARE binding activity. Predicted to be involved in regulation of neurotransmitter secretion and synaptic vesicle exocytosis. Predicted to act upstream of or within exocytosis and neurotransmitter transport. Predicted to be located in synapse. Predicted to be part of SNARE complex. Predicted to be active in terminal bouton. Orthologous to human CPLX3 (complexin 3).
cplx3b Predicted to enable SNARE binding activity. Predicted to be involved in regulation of neurotransmitter secretion and synaptic vesicle exocytosis. Predicted to act upstream of or within exocytosis and neurotransmitter transport. Predicted to be located in synapse. Predicted to be part of SNARE complex. Predicted to be active in terminal bouton. Is expressed in female organism. Orthologous to human CPLX3 (complexin 3).
cplx3 Predicted to enable SNARE binding activity. Predicted to be involved in regulation of neurotransmitter secretion and synaptic vesicle exocytosis. Predicted to be located in plasma membrane and synapse. Predicted to be part of SNARE complex. Predicted to be active in photoreceptor ribbon synapse and terminal bouton. Predicted to be anchored component of presynaptic active zone membrane and anchored component of synaptic vesicle membrane.

NR:

description
PREDICTED: complexin-3-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0019905 syntaxin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251842.3 True 1951 mRNA 0.41 3 29371065 29391966

Neighbor

gene id symbol gene type direction distance location
csk csk,LOC108264088,LOC106562350 coding upstream 63152 29219466 ~ 29307913 (+)
LOC111194800 NA coding upstream 170854 29199449 ~ 29200211 (+)
LOC103038575 LOC108439020 coding upstream 211880 29152296 ~ 29159185 (+)
LOC103023184 NA coding upstream 227875 29133628 ~ 29143190 (+)
LOC103022881 LOC108439021 coding upstream 307926 29018060 ~ 29063139 (+)
LOC103039409 NA coding downstream 6446 29398412 ~ 29401581 (+)
LOC103023825 tarsl2,LOC108413626 coding downstream 57184 29449150 ~ 29473681 (+)
tm2d3 tm2d3,LOC108439026 coding downstream 84719 29476685 ~ 29486014 (+)
lrrc49 lrrc49 coding downstream 129811 29521777 ~ 29598907 (+)
thsd4 thsd4 coding downstream 214091 29606057 ~ 29715602 (+)
G161425 NA non-coding upstream 16774 29333111 ~ 29354291 (+)
LOC111194801 NA non-coding upstream 156330 29210264 ~ 29214735 (+)
G161417 NA non-coding upstream 162775 29207963 ~ 29208290 (+)
G161414 NA non-coding upstream 168476 29202353 ~ 29202589 (+)
G161313 NA non-coding upstream 480821 28889370 ~ 28890244 (+)
G161476 NA non-coding downstream 91548 29483514 ~ 29490820 (+)
G161484 NA non-coding downstream 110154 29502120 ~ 29532246 (+)
G161502 NA non-coding downstream 228431 29620397 ~ 29639626 (+)
G161503 NA non-coding downstream 233057 29625023 ~ 29646905 (+)
G161508 NA non-coding downstream 264724 29656690 ~ 29657488 (+)
G161331 NA other upstream 254270 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 612058 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 746280 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1574561 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2251801 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 961720 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1462592 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1483072 30875038 ~ 30878327 (+)
efhb NA other downstream 2192780 31584746 ~ 31605490 (+)
G162017 NA other downstream 2676896 32068862 ~ 32148190 (+)

Expression


Co-expression Network