ulk3 (ulk3,LOC107665498,LOC107681021)


Basic Information

Item Value
gene id ulk3
gene name ulk3,LOC107665498,LOC107681021
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29411163 ~ 29446961 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251844.3
TTCGCTGCGTGCTGACGTCATTTTCAGCTGACAGTAAGCATGCACAGGAAGAAAACATCGGGCTGCAGTTCATCCACCTGAAGCGGCTCTTTACCCCAGAAAGGAAGGAGCTGGTGGATGTGTCCTGTCCAGGGAAGCATGGCCTCGAGCTTTGCCCCACCGAAGCTTGCTGACTTCATTCTGACTGAGAAACTTGGGAGTGGCACCTATGCTACCGTCTACAAAGCCTACAGGAAGaCTGACAGCAGAGAGGCGGTGGCCGTGAAGGTGGTCAGTAAGAAGAGTCTGAACAAAGCTTCTATGGAGAACCTGCTGACGGAGATAGAGATCCTGAAGACAGTGCGCCACCCACATATTGTGCAGCTTAAAGACTTCCAGtgggACAGTGAGAATATCTACCTCATTCTGGAGTGGTGCTCGGGGGGAGATCTGTCCCGCTTTATCCGGAGCCGCCGGATCCTGCCTGAGAGAGTGGCTAGACGTTTTCTACAGCAGATAGCCTGCTCTCTGAAGTTTCTCCATGAGAAGAACATCTCCCATCTGGACCTCAAACCCCAGAACATTCTACTTAGTGGCAGCGTGCTGAAATTAGCAGATTTCGGCTTTGCTCAGTACATGTCTCCGTGGGATGAGCAGAGTGCTCTGAGGGGCTCTCCTCTCTACATGGCTCCAGAGATGGTGTGCAGGCGACAGTATGACGCCAGAGTGGACCTCTGGTCTGTAGGGGTCATCCTATATGAGACGTTATTTGGCCGAGCGCCATTTGCATCCCGCTCCTTTGCTGAACTTGAAGAGAAAATCCGTAGTGATAAACCTATAGAGctgCCAGCCGGTGCCAGAGTGTCCAGAGACTGCCGGGATTTGTTGCTCAGGCTGCTGGACAGAGACCCAGACTCTCGCATTTCTTTTGAGGAGTTCTTTCTGCATCCGTTTGTTGACCTGGAGCACATGCCCAGCGCCGAGAGCCTGGGCAAggcaAAGGAGCTGGTTCTGCGGGCCGTGCAGAAGGATCAGGAGGGTGAACGAGCAGCTGCTCTGTCTCTGTACTGCAGCGCTCTGGAGCACTTTGTACCTGCCATCCACTatgagacagacagacagagaaaagaggTCCTGAGACAAAAGGTCAACCAGTACGTGTCTCGAGCTGAAGAACTCAAAGCTCTGGTGGCTTCAGACAACAGAATCAGCTTTGAGAGAGCAAAGTCATCCAGGGATATATTAAGGGAAATGTCTAAGGATCATCCGCGATTACTTACTGCACTGGATTTAGCCGCCGCTGCTGTAGCCAAGGAGGATTGTGGGTTGGAGGATTACGAAACGCTGGATCTGTATCAGCAGAGTCTGGGAGAGCTGCTTCTGGCCTTGGCTGCCGAGTCTCAGGGCCGCAGGAGGGAGCTGCTCCACGGCGAGATTAAGAGTTTGATGAGTCGAGCAGAATACCTAAAGGAAAAGATTAAGattCGGGAAACCCAGAGAGATGTGGATAAAGACCCTGTATCGGAATCTGTACGGACAtCATGTTGTCTACAGTAACTACAACTGCATCTCATTATGGATTCAACTGGGAAAATCACATTAGCCTACTGGAGGCTGACCCTCTGACTTGGAATCCAAAGGAATCTGATTGGGTTTTCGGTGTGAATTTATCTGCCCTCAACCAGTCACATGTTCACACAAGTTCAGACGGCTGCTGCTTCTTTTTAGCATGTAGCATTAGGGCTAGTCAATTTGCTGGATAAATGAATACTGTACAACACCAATGTTACATTGACTGATGTTTTTACTCGTACTGTATATCCTCACATCTATGCTTTTCGTTTTTGGTCACGTGACTGTCTTAAGAGATTTTGCTAAGGTTTAGAGATTTCAGAATAATTGGtactgtaaacaaaaaagtgaggGAACTCGTGAATCATTAGGTgtcctttttattttgtttaagctGTGCTTTTTCTGCCACTTCAGGCGAATTTTTTActctgcagtgaacacacacacacacacacacacacacacacagcggccCTCACCGCAGCTCGTCCGCAGAATAAGTGGGGCTTTGGGTCCATGTGGCTTTCCTCCCTGTTTGCTCTGCTCTTGCATTTACTTTTGGGCTGCCACACATCAAGCGCCGAGACTTTTTCTTCTGCTCGCCTCGCGCGCCACTGGTTAACAGTTTAGATTGGTGGCGCGGCAGTAAAAACACTGTGAAGCTTCGGCCAGTTCTGTCTCCTAACTGTACAAAACTGACTGGCAAAAAATAAGAAGTTAGGCACTTAGTGTGGATGGTACAATTATAGTACATTCAATGTACAAAAGTCTGTTTTTGGAAATGCTATTTGCTGTATGCTGGAGTGTAAACACTGattcctgtttgtttgtttgtttgttggtttatattgtctaagcattttttttctatgttaatatttttgtttgaattATTTATGGATTTTCTTGCCTAAAAATGAActtgattaaaatgtaattacaactttgagccattttttgtattaaa
>XM_007251846.3
TTCGCTGCGTGCTGACGTCATTTTCAGCTGACAGTAAGCATGCACAGGAAGAAAACATCGGGCTGCAGTTCATCCACCTGAAGCGGCTCTTTACCCCAGAAAGGAAGGAGCTGGTGGATGTGTCCTGTCCAGGGAAGCATGGCCTCGAGCTTTGCCCCACCGAAGCTTGCTGACTTCATTCTGACTGAGAAACTTGGGAGTGGCACCTATGCTACCGTCTACAAAGCCTACAGGAAGaCTGACAGCAGAGAGGCGGTGGCCGTGAAGGTGGTCAGTAAGAAGAGTCTGAACAAAGCTTCTATGGAGAACCTGCTGACGGAGATAGAGATCCTGAAGACAGTGCGCCACCCACATATTGTGCAGCTTAAAGACTTCCAGtgggACAGTGAGAATATCTACCTCATTCTGGAGTGGTGCTCGGGGGGAGATCTGTCCCGCTTTATCCGGAGCCGCCGGATCCTGCCTGAGAGAGTGGCTAGACGTTTTCTACAGCAGATAGCCTGCTCTCTGAAGTTTCTCCATGAGAAGAACATCTCCCATCTGGACCTCAAACCCCAGAACATTCTACTTAGTGGCAGCGTGCTGAAATTAGCAGATTTCGGCTTTGCTCAGTACATGTCTCCGTGGGATGAGCAGAGTGCTCTGAGGGGCTCTCCTCTCTACATGGCTCCAGAGATGGTGTGCAGGCGACAGTATGACGCCAGAGTGGACCTCTGGTCTGTAGGGGTCATCCTATATGAGACGTTATTTGGCCGAGCGCCATTTGCATCCCGCTCCTTTGCTGAACTTGAAGAGAAAATCCGTAGTGATAAACCTATAGAGctgCCAGCCGGTGCCAGAGTGTCCAGAGACTGCCGGGATTTGTTGCTCAGGCTGCTGGACAGAGACCCAGACTCTCGCATTTCTTTTGAGGAGTTCTTTCTGCATCCGTTTGTTGACCTGGAGCACATGCCCAGCGCCGAGAGCCTGGGCAAggcaAAGGAGCTGGTTCTGCGGGCCGTGCAGAAGGATCAGGAGGGTGAACGAGCAGCTGCTCTGTCTCTGTACTGCAGCGCTCTGGAGCACTTTGTACCTGCCATCCACTatgagacagacagacagagaaaagaggTCCTGAGACAAAAGGTCAACCAGTACGTGTCTCGAGCTGAAGAACTCAAAGCTCTGGTGGCTTCAGACAACAGAATCAGCTTTGAGAGAGCAAAGTCATCCAGGGATATATTAAGGGAAATGTCTAAGGATCATCCGCGATTACTTACTGCACTGGATTTAGCCGCCGCTGCTGTAGCCAAGGAGGATTGTGGGTTGGAGGATTACGAAACGCTGGATCTGTATCAGCAGAGTCTGGGAGAGCTGCTTCTGGCCTTGGCTGCCGAGTCTCAGGGCCGCAGGAGGGAGCTGCTCCACGGCGAGGTGGGTGAAAGAAATTAAGAGTTTGATGAGTCGAGCAGAATACCTAAAGGAAAAGATTAAGattCGGGAAACCCAGAGAGATGTGG

Function

symbol description
ulk3 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in autophagosome organization; peptidyl-serine phosphorylation; and protein autophosphorylation. Predicted to act upstream of or within autophagy and protein phosphorylation. Predicted to be active in autophagosome. Orthologous to human ULK3 (unc-51 like kinase 3).

NR:

description
PREDICTED: serine/threonine-protein kinase ULK3

GO: NA

KEGG:

id description
K21358 ULK3; serine/threonine-protein kinase ULK3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251844.3 True 2521 mRNA 0.47 17 29411163 29446961
XM_007251846.3 False 1499 mRNA 0.53 16 29412841 29446961

Neighbor

gene id symbol gene type direction distance location
p2ry1 p2ry1 coding downstream 704018 28703879 ~ 28707145 (-)
rap2b rap2b,LOC107757383 coding downstream 786383 28622083 ~ 28624780 (-)
arhgef26 arhgef26,LOC106581462 coding downstream 928943 28393281 ~ 28482220 (-)
LOC103043986 LOC103027426 coding downstream 1118027 28292230 ~ 28293136 (-)
LOC111194798 LOC108434033,LOC108264121,LOC108264117,LOC108264120,LOC107564266,LOC107695204,LOC107742945 coding downstream 1210025 28199233 ~ 28201138 (-)
larp6 larp6,LOC103354325 coding upstream 55154 29502115 ~ 29514077 (-)
LOC111194841 NA coding upstream 156774 29603735 ~ 29604672 (-)
LOC111194843 NA coding upstream 314707 29761668 ~ 29765504 (-)
LOC111194844 NA coding upstream 330213 29777174 ~ 29783407 (-)
LOC111194845 NA coding upstream 370070 29817031 ~ 29818532 (-)
G161432 NA non-coding downstream 16650 29279743 ~ 29394513 (-)
G161419 NA non-coding downstream 198082 29211476 ~ 29213081 (-)
G161411 NA non-coding downstream 213486 29197247 ~ 29197677 (-)
G161400 NA non-coding downstream 346985 29063827 ~ 29064178 (-)
G161377 NA non-coding downstream 548771 28822717 ~ 28862392 (-)
G161473 tarsl2,LOC108413626,LOC103138046,LOC106921578 non-coding upstream 16166 29463127 ~ 29468301 (-)
G161547 NA non-coding upstream 52162 29499123 ~ 29499327 (-)
LOC111194805 NA non-coding upstream 174098 29621059 ~ 29625291 (-)
G161588 NA non-coding upstream 366641 29813602 ~ 29816599 (-)
G161642 LOC107704271,LOC107712751,LOC107588547,LOC107746947 non-coding upstream 528393 29975354 ~ 29983682 (-)
LOC103037190 NA other downstream 469776 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 758216 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 1832245 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 2291910 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 3065454 26342351 ~ 26345709 (-)
G161711 NA other upstream 868645 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 1252209 30699170 ~ 30781708 (-)
tap1 NA other upstream 3205007 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 4650967 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 4953702 34400663 ~ 34731072 (-)

Expression


Co-expression Network