tm2d3 (tm2d3,LOC108439026)


Basic Information

Item Value
gene id tm2d3
gene name tm2d3,LOC108439026
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29476685 ~ 29486014 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251847.3
TCCCTTCTTGACGATGATGAGCATTTCTGACGGAGCTGGCAACCCCACTGCCAGTCTGGGGGGCGGTAGTTGGTCGGTGTTGCTGTGTGAATGGAGCTGAGAGGAGCGCAGGATGGCTGCTAATGGatttaaatgggtttttgaaAGGGGTCGGAGCGTCATGAAAACTTACGGCGTGttggcgctgctgctgctggatgctTTCTTCGGTTCTACACACGGGTATCTGAGCTCTGCACATGTGGGTCAGGAGCCCCCACGTTACACTCCTCAGCACAGCCCTGCAGTGAGCAGTTCAGCTGTGTCCACTCCATCCTCAGATTCTACAACTGTTACTGAGAATTACACAGCCAAGTGTCCCAGTGGAGGACTGTGCACCAAGTTACCGGCAGACTGCTTCACCTGTCAGTTTTATTACAACTGCAGCTACGGCAAGCCAGCCAACTTCACCTGTGCGCCCAAAAAAGGAGTAGATTGTGTGAATGAGTCAAATCAAGCGCAGGTGAGCTTTAACCTGACTATGGACTGTCAGTTTTGCTGGCAACTGGATTCATCTCAGTACCGCTGCAACATCTCAACCACCTGTATGACTGTGTCCTGCCCTCGCAAGCGCTACAACACCACCTGCAAGGTGCTGGACCACGTCAACTGCTTAGGGAAGAGGGAGTTTCAGAAGCGTCTTTTCTGCAACTGGACTGGAGGATACAAATGGTCTACAGCACTAACTCTCAGCATCACGTTGGGTGGGTTTGGCGCTGACCGCTTCTACCTGGGCCAGTGGAGAGAGGGTCTGGGCAAGCTCTTCAGCTTCGGGGGTCTGGGCATCTGGACCCTGATCGACGTCCTTCTTATCGCCGTGGGTTACGTGGGGCCGGCGGATGGATCTCTCTACATCTGAGActttttcaaattttaaaaagttaaatatctACACTACCGGACTATTGATGGACGGTGTCAAAAATTAGGCCGTTTTCATGCCTGCCTGAGTGACTCCATAGCTGTCTGCATGATTTCCAGTCCTGTTAGCACACGTGCGAGTGTCCAAACTCCCACTGCTGTCGATTCCCATCTGCTTGTGCAGAGGGCTCTGGCTCATTGGTTATGCGTTCGGCTCCATGTGCTGCTGAGAGAGgaggcggcagcagcagcggcaagGGGGAATCTGCACGCTTCCACACTCCATGCTGCACACGCTGTAGCGAGAAAACCCATGTCCACTTTACTCTGCCTTAACTGTGGCTGATGGAGGTGGTCAGCAGCAGCGTGGCTTTCATTTTCCAGGACTGTGCAGACAGGCTCGGCGTGAGACTTTGCAGCGAAGCTCAGAGACGCGTAATGGCCACTCTAGCTGGCTGGAGACGAGGAATTGAAGTAACTGTAATTGCGAAAGTGGCCTGTCTGACATGGACTCCATCTCGCAGCGGAGTGCTGCGTTCTGTAACAGTTACGAACTCTGTGATTGGCTTTTTAAGTTTCTTTTTCAAACTGGGTCAAAAAGACCTGAGATGTGTCATTTGTGGATGTAATgactgtacataaaaaaaaacagttaattgTGCTAAGGTTGCCTAGCCGGTAATTACATGTGTGCCACTATTTGTCTGTTCTACTTTTCACTCTTTAACCTCCAAAAGGCAGTAGTGATATGACCACTGCTtcaactgtttatttattgtcatgCTGTCAGTTCTTGTTGAGGTCGTTAGGATCACTATTCAAATATATTTGCTCTGTCCACCAGGCTGGATACACTTTGAGGACCTTGACCAGTCATGTGCTACTTAAATGGGACCTAAAGCTTAAAATAAACCATTGCAAAATGC

Function

symbol description
tm2d3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TM2D3 (TM2 domain containing 3).

NR:

description
TM2 domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251847.3 True 1826 mRNA 0.50 6 29476685 29486014

Neighbor

gene id symbol gene type direction distance location
LOC103023825 tarsl2,LOC108413626 coding upstream 3004 29449150 ~ 29473681 (+)
LOC103039409 NA coding upstream 75104 29398412 ~ 29401581 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding upstream 84719 29371065 ~ 29391966 (+)
csk csk,LOC108264088,LOC106562350 coding upstream 168772 29219466 ~ 29307913 (+)
LOC111194800 NA coding upstream 276474 29199449 ~ 29200211 (+)
lrrc49 lrrc49 coding downstream 35763 29521777 ~ 29598907 (+)
thsd4 thsd4 coding downstream 120043 29606057 ~ 29715602 (+)
LOC111194806 NA coding downstream 243336 29729350 ~ 29734672 (+)
LOC111194842 NA coding downstream 255047 29741061 ~ 29743027 (+)
LOC107196975 NA coding downstream 389760 29875774 ~ 29884606 (+)
G161425 NA non-coding upstream 122394 29333111 ~ 29354291 (+)
LOC111194801 NA non-coding upstream 261950 29210264 ~ 29214735 (+)
G161417 NA non-coding upstream 268395 29207963 ~ 29208290 (+)
G161414 NA non-coding upstream 274096 29202353 ~ 29202589 (+)
G161313 NA non-coding upstream 586441 28889370 ~ 28890244 (+)
G161484 NA non-coding downstream 16106 29502120 ~ 29532246 (+)
G161502 NA non-coding downstream 134383 29620397 ~ 29639626 (+)
G161503 NA non-coding downstream 139009 29625023 ~ 29646905 (+)
G161508 NA non-coding downstream 170676 29656690 ~ 29657488 (+)
G161511 NA non-coding downstream 237880 29723894 ~ 29724121 (+)
G161331 NA other upstream 359890 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 717678 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 851900 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1680181 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2357421 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 867672 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1368544 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1389024 30875038 ~ 30878327 (+)
efhb NA other downstream 2098732 31584746 ~ 31605490 (+)
G162017 NA other downstream 2582848 32068862 ~ 32148190 (+)

Expression


Co-expression Network