larp6 (larp6,LOC103354325)


Basic Information

Item Value
gene id larp6
gene name larp6,LOC103354325
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29502115 ~ 29514077 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251848.3
GGCAGTGCATATAGGCAGGTGCGGGGGGCGGTCGCCCACCTCCGTGAGGGAAATGAgaagaaataaagggaaaaaacaaCAGCGAGGTATCGAGCGAAAGCATGCACGCTTTAGTGAAGGTTTTCCTCCGGCTGCTTTCCTTCCTGTTGCCTCCCTCCTGGCTGCAGGCGGGTTCATGCTGGTGGGCCGGGCCTGAGCACCTCCACGACTCGCCACGTCTCAAACGCGTAAAGCCTCTTACAGACGGCGCCCGCCTTCTTCCTCCAACACcgcctcctccttctcctcctcttcttcctcctcctactcctcctcccCCCCTGCTGCCGCCCAGCCCCGGCTCGCTcgctgctgccgccgccgccactgctgctgctgccgccgctgccACTGCTGCCTCCTCCAGTCCCGCGGGCTCTGCGTGGAGGGGGATCCGGGAGCTCTGGCAGGCCGTGCGCCTCGCGCTAGTCCCGCGAGTCCGAGCATCCTCCGAGCCTCCCCCGCTGAAGCTGCCGCCGCCTCCTGTGGCTCTGGAGCTGCCCCTGACGCTGCCGACGACTTCCAGCCCCGCAAGCATGATGAGCGCCGTCGAGACGGAGCTGGAGCCCGGGGACATGGGCACACGCGTGACCATCACCGTGGCCATCCAGGCGGCCGAGGACGAGGAGCCCGACGAGGAGGAGTCGCTGGATTATTGCTCCGGCAGAGGAGAGCTCCCCGGCGGCAGCTGCAGCGAGGACGACATGGCCAGGCACGAGAAATCCAGtgGTGCTGGCACGAGTGGAGGAGAGCTGGAAGAGGAGAGCTGGCAGCCGCCGGACCCAGAGCTCACCCAGAAGCTCGTAGCCCAGATCGAGTACTACCTGTCGGATGAGAACCTGGAGCACGACGCCTTCCTGCTCAAACACGTTCGCCGCAATAAGCTCGGATTCGTCAGCGTCAAGCTGCTCACATCCTTCAAGAAGgtGAAGCATCTGACTCGGGACTGGAGGACCACAGCCTATGCATTGCGTCAGTCTAATCTCTTGGAGCTCAACGACGAGGGTCGGAAAGTTCGGCGCCGGACGAGCGTCCCAGTATTTGCGAGCGAGTCACTGCCCAGTCGCATGCTGCTCCTGAGCGAGCTGCAGCGCTGGCCTGAGCTGGGCATGGCATTGGCAGGTGGAGGCGGGGCTGGAGACGGAAGCCCTGGTGGCGGCGTCGCCCAGCAGGAGCGCCTCATGGAGCTCCTCCTCAAGGCATTTGGTGTATACGGCCCCATTGCCTCAGTGCGCGTCCTTAAGCCTGGGAAAGACCTTCCTGCTGACCTGAAGAAGCTGAGTGGCCGGTACTCACAGCTGGGCAGTGAGGAGTGTGCAATTGTGGAGTTTGAGGAAGTAGAGGCAGCTGTCAGGGCCCATGAAGCCTATTTGGATGGGAATGGAGATGGCAAAGGCTTGCTTGGGCTCAAAATGGTGCTGATTGGCACTAAACCGCCAAAAAAGAAGGTGCAAAAAGAGCGGTCACCAAGAGAGGAGGGCATTGGGGGGATGCGCAAGAGTCGTTCGCTAAACAGCAGAGTTCGTGAGCTGCAATATCACGACGATTCGGCGTGTAGTTCTTCAGAAACAGAAAGCAACCCCACCTCTCCGCGACTTGCCCGTAAATCACGTTCCAGCTGCAACAAGCTGAGCCCAACTAGTGGAGGCCCAGCTAACTTCCACCTGTCTCCTCGCTCCAGCCCCTGGAACAGCCCCAGGGCCAGTCCCAGTGCCCAGCGGAAAGCCACGCCCCAGTCTGGAAAGTCCCCCCTGGCCAGCGAGGGCAGGTTAAGTCCAGAGCCGGGACGCCGCTGGGCGGACTATTCTTCGGACAGCAGCCTGACCCCCTCAGGGAGCCCCTGGGTTCAGCGAAGGAAGCAGGTGGCCAGTCAGGAGAGCAGCCCTGTGGGAAGCCCCATGCTCGGTCGAAAGATCCAGAATGCAGATGGGCTCCCACCAGGCGTGGTGAGGCTCCCCAGGGGCCCAGATGGGACACGTGGGTTTCACGAGCGGGGCAAAGCAGCAGCCACTCAAACTTGACTCGAGAAAAAAAAGGGGGAGGACCCTTGCTACCCCAAAAAAGAAGCAGCACTGGACCGTACAGCAGTGAGGTTCACACCCTGCAGCCCTGTTGGACTTTAATTGGTCATGACCTGTCCTGTCCGAACAAACAAGAGATCACTGAACTTCTAAGTGTCACTGTCTGCTTGACTGACTTTGTCTTTGTAATACCTTTTTATCTGGGGggttttgatttgattttgctTTATATAAATGATGATTGATTTAATTTGACATTTCTGTTATTTAAACTTATCAATTGACATTGGAAGAAAGGGAAATTACTTCAACTATgctggtttaaaaaaagcattttttattttatttttttatttttttatttaatcaccCCCCAAAAAATGTCCTTggtcctaaaaaaaaacaaaaaaaaaaaacaggtgtgatTCTGACCTTGTGAATGTTAATGTGTGCGTGTTTTGGCGTGGACAGTGGTTTAGGCACATGGTTTTGATAAGAACATCACCATATGCCTTGTTGATAATTAATTGTTGAGCACCTAAAAAGCAGCGATGAAACTTTTGCTCTTTCTGTGGCCATAACCTCTCCCTGCCGTTTGGTTAAATAGTAATCCCTTAAGAGATGGTTTTtgttgagttttaattttctttaaattatctttaattttcttttttaaacaatacctTTCTGCCTTTCTTAAACCATAATGGTTTATTTTAGAGGTTACTATTCTAGCAGGGATGTGAATAAGTGAAGCTCTATCTGCTTTGTTCAAGTGTAGCATCTATGAGATGGGGTAGTGAGGTGTCTGGCTCCAGTGTGTAAATGCTTTGCTTTTGCCTTTACAGCTGAGCAGAGACCATGTACAGCTCATTTCCTATTGTACAAATAAATCACTATAATGGCAAGCTCA

Function

symbol description
larp6 Enables RNA binding activity and myosin binding activity. Involved in positive regulation of collagen biosynthetic process; positive regulation of mRNA binding activity; and positive regulation of translation. Located in nucleus. Part of polysome.

NR:

description
PREDICTED: la-related protein 6

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K18733 LARP6; la-related protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251848.3 True 2973 mRNA 0.54 3 29502115 29514077

Neighbor

gene id symbol gene type direction distance location
ulk3 ulk3,LOC107665498,LOC107681021 coding downstream 55154 29411163 ~ 29446961 (-)
p2ry1 p2ry1 coding downstream 794970 28703879 ~ 28707145 (-)
rap2b rap2b,LOC107757383 coding downstream 877335 28622083 ~ 28624780 (-)
arhgef26 arhgef26,LOC106581462 coding downstream 1019895 28393281 ~ 28482220 (-)
LOC103043986 LOC103027426 coding downstream 1208979 28292230 ~ 28293136 (-)
LOC111194841 NA coding upstream 89658 29603735 ~ 29604672 (-)
LOC111194843 NA coding upstream 247591 29761668 ~ 29765504 (-)
LOC111194844 NA coding upstream 263097 29777174 ~ 29783407 (-)
LOC111194845 NA coding upstream 302954 29817031 ~ 29818532 (-)
LOC111194846 NA coding upstream 325176 29839253 ~ 29847639 (-)
G161547 NA non-coding downstream 2788 29499123 ~ 29499327 (-)
G161473 tarsl2,LOC108413626,LOC103138046,LOC106921578 non-coding downstream 33814 29463127 ~ 29468301 (-)
G161432 NA non-coding downstream 107602 29279743 ~ 29394513 (-)
G161419 NA non-coding downstream 289034 29211476 ~ 29213081 (-)
G161411 NA non-coding downstream 304438 29197247 ~ 29197677 (-)
LOC111194805 NA non-coding upstream 106982 29621059 ~ 29625291 (-)
G161588 NA non-coding upstream 299525 29813602 ~ 29816599 (-)
G161642 LOC107704271,LOC107712751,LOC107588547,LOC107746947 non-coding upstream 461277 29975354 ~ 29983682 (-)
G161645 NA non-coding upstream 485669 29999746 ~ 30000998 (-)
G161640 NA non-coding upstream 512934 30027011 ~ 30132134 (-)
LOC103037190 NA other downstream 560728 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 849168 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 1923197 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 2382862 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 3156406 26342351 ~ 26345709 (-)
G161711 NA other upstream 801529 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 1185093 30699170 ~ 30781708 (-)
tap1 NA other upstream 3137891 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 4583851 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 4886586 34400663 ~ 34731072 (-)

Expression


Co-expression Network