kctd15 (kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374)


Basic Information

Item Value
gene id kctd15
gene name kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 35549892 ~ 35603715 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251851.3
CTCGGCGGCGCTGAGAGAGAGCACCGAGCGCTCCGGTCGCGACGTTTCGAAGCTGCGCTAACGTTAGCTATAgcttatagatttttttaaagccacAGCGACCCTTTTCAATCTATCGGCGAGGGATACACacgtttttaatgcagtttgaGGTGATTTTTTTGGGCTTTGTGACACACAGTCTGTGAGTGGAGGTCAGCTCCGCTCGACACGAGCTGCGTCCTAAAAAGCAGCTTCTTCAAACGACGCCGGCGTTAGTTTAACGCAAACTTGTAGCAGCAGATTTTAATCCTTAACCCTCCTAAAGCCCATACCAGCCGGGACTGACTCAACCTGTCTGCGATCCCTTTGGACTCCTACGATGTTCGAGACGGAAGGGAGGAGCATGTCGCGCCTTTCTCTGAGCCGCTCGCCGGTCTCTCCTCTGGCCGCGCAGGGCATCCCTCTGCCGGCGCAGCTCACCAAAGCCAACGCGCCCGTGCACATCGACGTGGGCGGACACATGTACACCAGCAGCCTGGCCACCCTCACCAAGTACCCGGACTCCAGGATCAGTCGTCTCTTTAACGGCACAGAGCCCATCGTGTTGGACAGTCTAAAGCAGCACTACTTCATCGACAGGGATGGAGAGATTTTCCGCTACATCCTCAGCTTCCTCAGGACCTGcaagctgctgctgcctgacGACTTCAAGGACTTCCACCTGCTGTATGAAGAGGCGCGGTATTATCAGCTGACTCCCATGGTGAAGGAGCTGGAGCGATGGAAGCAGGAGCGCGAGCAGCGGCGTCTGGCCCAGCCCTGCGACTGCCTGGTGGTGCGTGTGACCCCTGACCTGGGCGAGAGGATCGCCCTGAGCGGAGAGAAAGTCCTGATCGAGGAGATCTTCCCCGAGACCGGAGACGTCATGTGCAACTCGGTCAACGCCGGCTGGAACCAGGACCCGACACACGTGATCCGATTCCCTCTGAACGGCTACTGCAGACTCAACTCAGTACAGGTGCTGGAGCGTTTGTTCCAGAAGGGTTTCAGCGTGGCGGCATCATGTGGGGGCGGAGTCGACTCTTCTCAGTTCAGCGAGTACGTCCTGTGTCGCGAGGATAGGCGGAGCCAGTCCATGAACACGCCCAACAGGATAAAACAGGAGCCGCTGGACTAGAGGCCACACAGACTTCCCATCCGAGACTTAACACAACccagttaaacacacacacaaacacattcacacacacacatttacatacatttacactcactgtgtgctcacacaacacacacacacacatttaaacacatgtaCAGACTCGGATACAGATGCCTGTTAGCTTCGCCGGCTCTGAAGTGGAATGTAATGTATACAAACACAACAAACGAATAAAAAACAGCGAATTCCTCACCTCACCGAACTCAAAAGAAACCCAAAGAACTACAGTGTGAACTACAGAGCGAACTACAGAAGGGGCTCAGCCAATCCTGCCTGGTGACCAAACTAAAAAGAACAATGACCGTGAGCCGcccctctctctcagtgcagtgTGAACCGGTGTGTTCTCCTCGTCTCGTGTCGCCGTGTGAGgcatgtgtgtggtgtttgtgcgCTGGTTGCTCAAGGCTGGACTCAGAAGAGAGCTGGACTTCCAACAACCAACACGAGAAACCAAGAAAACTCTGAGTGAAGCGAAGCAAAGCGCGACGGACTGACTCAGTGAACAGGGGGTCCGGCTTCTATACATCGCCAAACCGATTGTTTCACGTTAAATActgttgtttataaaaatgcagcGTTTCCTCCCAACATGATGTACACAATCATTAATA
>XM_007251852.3
taagagAATGAAAATGTATGCCTCGCTGAAAGCGCCCAGGGAAACGTTACATCAGACGAAACGACACCGATTAAAATCGGCTTTTTGGCTGCGAGTTGGTTGAACGGCGCGCCGCTCGCGTGATGCTGCTGCCCGCTTCCCCCCTTCGCTTCCCGGCCACAAGAACTTCCAACCCCCGCTGAAGCGAGTCCCACTTTCCgttttttttcactctcttttttggcggaaaaatagaaaaacacgaagaaaaaaaaacgcaaacACTAATGAATCATCTGAATCATCATCCGAGCAGGGGAGAATATCACGTTTTCATCTTTTAAGAGggatagaaaaaataaaaaaataaataaattagcctGGGAGAGAGTGGGGCTGAGCTAATTGTAGCCTAATCCTTTTGCCCCAGAGGCGTGTGGGCAGCCCGGAGCAAGAATTCAGTTTTAGCTCCTGCTCTGTTATTTAGACACGGCTTTATTGgctttcttttttccccagcaGTTTCATTTTTGGgggcttttttattattttctgtggGGGCAAAGATTCTGAAACGCGGATCCAGGCAGCAGAACGCCAGAACAATAAAGTATTAAAGAAGATATAAAAAGCAGCCGGTTGGGGGAGAGCTCCGCGCCGTGTGAAAGGAAGGGAGGAGCATGTCGCGCCTTTCTCTGAGCCGCTCGCCGGTCTCTCCTCTGGCCGCGCAGGGCATCCCTCTGCCGGCGCAGCTCACCAAAGCCAACGCGCCCGTGCACATCGACGTGGGCGGACACATGTACACCAGCAGCCTGGCCACCCTCACCAAGTACCCGGACTCCAGGATCAGTCGTCTCTTTAACGGCACAGAGCCCATCGTGTTGGACAGTCTAAAGCAGCACTACTTCATCGACAGGGATGGAGAGATTTTCCGCTACATCCTCAGCTTCCTCAGGACCTGcaagctgctgctgcctgacGACTTCAAGGACTTCCACCTGCTGTATGAAGAGGCGCGGTATTATCAGCTGACTCCCATGGTGAAGGAGCTGGAGCGATGGAAGCAGGAGCGCGAGCAGCGGCGTCTGGCCCAGCCCTGCGACTGCCTGGTGGTGCGTGTGACCCCTGACCTGGGCGAGAGGATCGCCCTGAGCGGAGAGAAAGTCCTGATCGAGGAGATCTTCCCCGAGACCGGAGACGTCATGTGCAACTCGGTCAACGCCGGCTGGAACCAGGACCCGACACACGTGATCCGATTCCCTCTGAACGGCTACTGCAGACTCAACTCAGTACAGGTGCTGGAGCGTTTGTTCCAGAAGGGTTTCAGCGTGGCGGCATCATGTGGGGGCGGAGTCGACTCTTCTCAGTTCAGCGAGTACGTCCTGTGTCGCGAGGATAGGCGGAGCCAGTCCATGAACACGCCCAACAGGATAAAACAGGAGCCGCTGGACTAGAGGCCACACAGACTTCCCATCCGAGACTTAACACAACccagttaaacacacacacaaacacattcacacacacacatttacatacatttacactcactgtgtgctcacacaacacacacacacacatttaaacacatgtaCAGACTCGGATACAGATGCCTGTTAGCTTCGCCGGCTCTGAAGTGGAATGTAATGTATACAAACACAACAAACGAATAAAAAACAGCGAATTCCTCACCTCACCGAACTCAAAAGAAACCCAAAGAACTACAGTGTGAACTACAGAGCGAACTACAGAAGGGGCTCAGCCAATCCTGCCTGGTGACCAAACTAAAAAGAACAATGACCGTGAGCCGcccctctctctcagtgcagtgTGAACCGGTGTGTTCTCCTCGTCTCGTGTCGCCGTGTGAGgcatgtgtgtggtgtttgtgcgCTGGTTGCTCAAGGCTGGACTCAGAAGAGAGCTGGACTTCCAACAACCAACACGAGAAACCAAGAAAACTCTGAGTGAAGCGAAGCAAAGCGCGACGGACTGACTCAGTGAACAGGGGGTCCGGCTTCTATACATCGCCAAACCGATTGTTTCACGTTAAATActgttgtttataaaaatgcagcGTTTCCTCCCAACATGATGTACACAATCATTAATA
>XM_015606487.2
tgctgtcaggTCAGTCCATTAAGGCAAGCCGCGGGGGGAGCCGGATCTGAACCCTGAGCTATTTCAGGTCTGCCACCTCTTTCTTGGTGCAATTTTCTGCGAGTCGGGCATACAGAAGCTAGGATATAGTCGGATCACCGAGCAGAGCCTCTCAATATGCTACAAATCACGAGTAGAACAGGAGCATCCCACTGAAGGGAGGAGCATGTCGCGCCTTTCTCTGAGCCGCTCGCCGGTCTCTCCTCTGGCCGCGCAGGGCATCCCTCTGCCGGCGCAGCTCACCAAAGCCAACGCGCCCGTGCACATCGACGTGGGCGGACACATGTACACCAGCAGCCTGGCCACCCTCACCAAGTACCCGGACTCCAGGATCAGTCGTCTCTTTAACGGCACAGAGCCCATCGTGTTGGACAGTCTAAAGCAGCACTACTTCATCGACAGGGATGGAGAGATTTTCCGCTACATCCTCAGCTTCCTCAGGACCTGcaagctgctgctgcctgacGACTTCAAGGACTTCCACCTGCTGTATGAAGAGGCGCGGTATTATCAGCTGACTCCCATGGTGAAGGAGCTGGAGCGATGGAAGCAGGAGCGCGAGCAGCGGCGTCTGGCCCAGCCCTGCGACTGCCTGGTGGTGCGTGTGACCCCTGACCTGGGCGAGAGGATCGCCCTGAGCGGAGAGAAAGTCCTGATCGAGGAGATCTTCCCCGAGACCGGAGACGTCATGTGCAACTCGGTCAACGCCGGCTGGAACCAGGACCCGACACACGTGATCCGATTCCCTCTGAACGGCTACTGCAGACTCAACTCAGTACAGGTGCTGGAGCGTTTGTTCCAGAAGGGTTTCAGCGTGGCGGCATCATGTGGGGGCGGAGTCGACTCTTCTCAGTTCAGCGAGTACGTCCTGTGTCGCGAGGATAGGCGGAGCCAGTCCATGAACACGCCCAACAGGATAAAACAGGAGCCGCTGGACTAGAGGCCACACAGACTTCCCATCCGAGACTTAACACAACccagttaaacacacacacaaacacattcacacacacacatttacatacatttacactcactgtgtgctcacacaacacacacacacacatttaaacacatgtaCAGACTCGGATACAGATGCCTGTTAGCTTCGCCGGCTCTGAAGTGGAATGTAATGTATACAAACACAACAAACGAATAAAAAACAGCGAATTCCTCACCTCACCGAACTCAAAAGAAACCCAAAGAACTACAGTGTGAACTACAGAGCGAACTACAGAAGGGGCTCAGCCAATCCTGCCTGGTGACCAAACTAAAAAGAACAATGACCGTGAGCCGcccctctctctcagtgcagtgTGAACCGGTGTGTTCTCCTCGTCTCGTGTCGCCGTGTGAGgcatgtgtgtggtgtttgtgcgCTGGTTGCTCAAGGCTGGACTCAGAAGAGAGCTGGACTTCCAACAACCAACACGAGAAACCAAGAAAACTCTGAGTGAAGCGAAGCAAAGCGCGACGGACTGACTCAGTGAACAGGGGGTCCGGCTTCTATACATCGCCAAACCGATTGTTTCACGTTAAATActgttgtttataaaaatgcagcGTTTCCTCCCAACATGATGTACACAATCATTAATA

Function

symbol description
kctd15 Enables identical protein binding activity. Predicted to be involved in protein homooligomerization.

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD15 isoform X1

GO:

id name namespace
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0051260 protein homooligomerization biological_process
GO:0044335 canonical Wnt signaling pathway involved in neural crest cell differentiation biological_process
GO:0060037 pharyngeal system development biological_process

KEGG:

id description
K21754 KCTD1_15; BTB/POZ domain-containing protein KCTD1/15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251851.3 False 1818 mRNA 0.53 5 35550569 35603715
XM_007251852.3 True 2092 mRNA 0.52 5 35549892 35603715
XM_015606487.2 False 1638 mRNA 0.54 5 35553200 35603715

Neighbor

gene id symbol gene type direction distance location
chst8 chst8,LOC108264314,LOC107668469 coding upstream 37115 35067318 ~ 35512777 (+)
pepd pepd coding upstream 710865 34807506 ~ 34839027 (+)
LOC103044586 NA coding upstream 1200012 34319213 ~ 34349880 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding upstream 1234668 34300018 ~ 34315224 (+)
LOC103027681 NA coding upstream 1332089 34213886 ~ 34217803 (+)
lsm14a NA coding downstream 182615 35786330 ~ 35803285 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 285239 35888954 ~ 35909612 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding downstream 392257 35995972 ~ 36064422 (+)
prtg prtg coding downstream 470091 36073806 ~ 36110407 (+)
dnaaf4 NA coding downstream 523424 36127139 ~ 36136740 (+)
G162593 NA non-coding upstream 29101 35498034 ~ 35520791 (+)
G162635 NA non-coding upstream 103551 35441683 ~ 35446341 (+)
G162620 NA non-coding upstream 208957 35340227 ~ 35340935 (+)
G162617 NA non-coding upstream 230245 35317946 ~ 35319647 (+)
G162610 NA non-coding upstream 314804 35234290 ~ 35235088 (+)
G162746 NA non-coding downstream 224305 35828020 ~ 35828825 (+)
G162829 NA non-coding downstream 518007 36121722 ~ 36123863 (+)
G162848 pigb non-coding downstream 576125 36179840 ~ 36181301 (+)
G162850 NA non-coding downstream 579045 36182760 ~ 36183548 (+)
LOC103046468 NA non-coding downstream 580004 36183719 ~ 36185659 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 2830617 32714183 ~ 32719275 (+)
G162032 NA other upstream 3254863 32236316 ~ 32295029 (+)
G162017 NA other upstream 3401702 32068862 ~ 32148190 (+)
efhb NA other upstream 3944402 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 4671565 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 204150 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 508327 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 528700 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 1150470 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 1683452 37287167 ~ 37352779 (+)

Expression


Co-expression Network