rgma (rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037)


Basic Information

Item Value
gene id rgma
gene name rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 20986624 ~ 21007290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254471.3
ATGCATTTCAAAAGGGAGCGGAGAGCAGCGCTGTCCCGTGCTGGATGGATGGTTATGGGGAAAGGAGCGCGATCCTGGGCGCTGGAAGTCGCCAAGATCCTCCTCGCGGTTCTCTTCTTCTTCCCAGCGGCCACTCTGCAGTGTAAGATCCTAAAGTGTAACTCAGAATTCTGGGCATCCACCCCGAGCTCGGGCCCCAAGGAGGAGTTCTGCACGGCACTACGCGCCTACAACAGCTGCGTTCGTCGCACCGCCCGTACCTGTCGGGGTGATCTAGCCTACCACTCTGCCCAGCATGGCATTGAGGACCTCATGACCCAGCACAACTGCTCCAAGGAAGGCCCCACGGCCTCACCCCGCGCAAGGACGCTTTCACCCCCAGCTCCTCCCCTGCCACCGCAAACCAACAACTTCGTTCCCTCAGACGGCCCAGAGGTGTGCCACTACGAGCGCAGCCTCCCACGCCATTCAGCGCCACCAAACTACACGCACTGCGGCTTCTTCGGGGACCCGCACCTGCGCACCTTCAACGACGACTTTCAGACTTGCAAAGTGGAGGGAGCATGGCCGCTTATCCACAACAAGTACCTGTCAGTGCAGGTCACCAACACCCCGGTGCTGCCCGGCTCTGCAGCCACCGCCACTAGCAAGCTGACAATTATCTTCAAGAACTTCCAGGAGTGCGTGGATCAGAAGATGTATCATGCGGAGACGGACGAGCTCCCGGCAGCGTTCGCTGATGGCTCGAAGAACGGAGGTGACCGGCACGGTGCCAACACTCTTCGCATTGTGGAGAAGGTACCCGGCCAGCATGTCGAGATCCAGGCACGCTATATCGGCACCACCATTGTGGTCCGGCAAGTGGGCCGCTATCTCACGTTTGCAGTGCGGATGCCCGAGGAGGTGGTGAATTCTGTGGAGGATCAGGAGAATCAGGACCTGTATCTGTGCTTGCACGGCTGCCCTGCCAACCAGCGCATAGACTTTAGGACCTTCCGGGGAAGGGCTGCTGAAAGCCAAGGCTCATCTTCCAGAGCAAAGCCTGAGAGTCCTTCACACGGCTTCACATACCAGTCGGCAATGGCTAAGTGTAAAGAGCGCCTCCCGGTGGAGGACCTGTACTTCCACAGCTGTGTCTTTGATCTGCTCTCCTCTGGGGACATCAACTTCACCCTGGCCGCCTACTACGCCTTCGAGGATGTTAAAATGCTGCACTCCAACAAGGAGAAGCACCACCTCTTTGAAAGAGACGCTGGCCTGTTTAACTCCACCCCCAAGGGATCTAGCAGCGCTGGCTTGCTGATGCTCCTTACACTCGTCGCTGTTTCTGTGTGGACTGAGTTGTGCTGCTTGTGTCTGTAgttatgttgttgttgttgggtttGGGTTTGTTTCGTTGTCTCGTGATGGTTGTTGGAAAGCTTTGTGTTTCTGGAAACACGGCTTTGTCCATTGTCCACGCGTCCAGAGGCTGAACCCGAGGGCTTTCAGTCTTGTGCGTGTCATCACACCCACCCCAGCCATGGACTCATCTGTGTGTTGTCAGTGAATGGACATCCCTTGAGCCAGAGTAGGAGCACAGTCCTGCACAGAGAGAAGTCCTGGACCTGTCACAGAGTCCGTCCGGCAGGTTCCAGGGCTGCTCAGCGATGAGAGACTCCAGGGCTTCTGGAGACTCTGAGTGGgattaaaacctaaaaaaaacgcAGACTCCCCCTCCCTGCTCGCCTCTCCCACGTCCCCACTGAAGCAAGATCCCGCTGAGAAAGGGGGCGCATGGGAGGGGATGATCCTCTTGCAGAAAGAAGATCGAGCTTTGGAGTTGTACGCAAGCTGTCTGGTGCCAAGACGAGAGGCCTAGCCTGCATGCGTCTTCTGGAACAGGACAGCGGGACATGACAGGAGCTTTTATTAACCTCTGCTGAAGAAGGGAGTTCTACTGGAGCTGCTCATCTTTGATGAGGCTCCAGCTTTGGAAAGCTGGAGCAAACTTTCAAGCTTTTTCTAGAAGAATCCCCCCCCCCCAGACAAAGCCATGTCATATCAGTGAGTCGCATTGTCTACATCAGGATTAATGGGCCATAACAGCAGGCCTTtcttgtacagtgtgtgtgtgtgtgtgtgtacttgtgtcAAGACCCAAGTCCAAGACCATGTGTAGCGTGAATGTGTTGGTgaaattttgtgtgtgtgtgtttctgcgtgtgtgtgtgtgtgtgttcttgggAGTTGTAGGAGAAAGGAGTTAGGAGAAATATTTCTGAATGTCTTTATATTGCACCCACGGTCCTAATTTACCTCTGGCATGGTGGTCCATGGGTCAGTTGGATTTTTTGCCTGCCAAAAGCTGTCTCCTGCATAAACTGGCAGGCAGCTTGGAAACATAATTCTGTACGTCAGTCAATAGGTTTTAAACACACCCAGATGAGAATATCTGTGATCTatcatgatgatgatgttaGTTATAAAGGCTGTCTAAGTTCATTCGGACTTTGATTTCGTCGATGAACGCAGCCCAGAATTCGCTTGAGAGCACGTAGCGAACAAGGATCCCTTCAAATGTGTTTACTGAGTAAATGCCATTGTTTAGATGGGAAAGCTAGTCATCCAGGCCTGTACGTTTGGCGGAGGACAAGACGGACGTGTGTTGAGCACATGTTCTTCTGAGGAGAAAACTAAATCTAGTCATTTGGCAACTCGACAGCCGCCAACACACAGTGCGGCAGAGGTGGAGACGGGGAAAAAGACTGGTGGAAAGAGATGGAAGCCTCGGCCCCCCACAGCCTGAACTATCCTTCATGTAGTTCGTCTTAAGTTGTtcttaaagaaataataaagccTCGCTCTCCATTTCAAAGGGGTTGAGGGAGTGTCGACGTGGCTGTGCTGTAGGGCCCGTTTGACTCGCAACTCTCCGTAGATCTGTGAATTTATGGTGGCGGCCTTTTGCCAAAGAACAAGCCCCGGTGCCAGCGATTTCCCCGAACAGCTGAATCTCCCCCCTGCCTCCCTCACGGGACGTTTGTGGTTCACTCAAGTATTTGGATTTAAACCAGACGGCCTGGTGTGTTCTGTGTACAGTACTGGAAGGTGCTGCTGCTAAACTGTAACAGGGTGGACGGACCTTTCCAGCGCAGGGCAGCCAGGCCCTGAGACGGAGTGAGGAGTTTACGTTCTCACCTGTTATTAGGCTTTTTTAATTCTAGAAAATTGAATAGACAAGCATGCACAAACACAAAGGCTTTCGCTTTATGCATTTCCCAATAGATTTGAAATGTAAAGTGAAGCACCAAGTGGCCTGCTGTATGTCTTAAAGCTACTTTTAACAATCCGAACCAGGTTGCATCAGCTGTGATGTGAAGCAACTCACTAGTCTCGCAGAACAATTGGTAGTACAATTATCATAGTAATCCCTAACCTGACAGCAGGAATGCAGGAACTTTTTCTGACCTATGAAGTCCAGACTACATGTCCACTAACACGTCATGTTCCAGTGTGTTTCTTAACAGTGCTCCgtttagaaatgtttttagaaagagtaaagaTCTAAAGAAGTGTATTTAATCAAACACAGCAAAATGTTTGAGATCTACTTTCTTccaagtaatttattttttacactgtattgCTCTAAAGCATGGGGTGGGCAGTTCCGTTCCTGGAGGGCCGGATTTCTGTTtacttcagtttatttgttaattGCCAGGTTTTAACAGTTCTTTTAGACCTTATTTACACCTGGACACTATTTATGTGACTAGTATATGGGTTTTGCCAAATTTACACTTAGTCCGATGAGGCTCCAGTTAGTCAGATTTAAATTCAGAGGTGTCAAGTTATGTCTAATACAAATatttgttaccttacttaagtagaaatttgGATATCTATACTTTattggagtaattattttatacaaaattatctaaactttctactccatttcattttagcttgtgtttattctggcttctcatcgtaaaaaaaaatactatcaagataaatctctccatccatgtattattgcgattataacAAAGTTCCAGTATTGCTGTTTACACACCgctagttaaaatagttccattgctgctctgtttgtaactGTGCTgcttggcttgtaagcgctgcagcgttgctaggttacctgtatgtggcctCAGCTtaagttacagtgcattaccggctgataatggcagtCATAAAACTTAACATTGCAgtgtcagaactaactgtggtataattcaGCTtagttaaagtattttaaaccgtAGTATCTAAAcatctacctgagtaatgaatttaaatacttttgacacctttgttTAAATCTATCTTCCATGTGTGACGGAATATGCAAATCTGCTCACTACTTGGCAACCAGTTGTTTATCCATTCAAACCTTTTCCTGTGTTGTGCTAAATGGGAGACGGGGTGCTGTAAAATTCACAATTTTACAGGCCCTTTCTTTACATGATGATCTTCCTCCCAGAggtttacactgttataaataACGTGGATCAAATGCATCTCAAATCTCTTCcagaagtggtttgagtgattagatttgtatctgttttaaatgtggtgCATTTTCATGTGGCCTGGTCTCATCCCAATATAATCCTAATACTCCAGACACAGAAGTGAtcaccaggtgtaaacagagtCTCAAAGCAGAGAAATCTGCAAACCGTAGCGGTCTCTGGCCCTTCGTTGCCCACCCCTGCTCTATAGGCTTCAACTACTGCTATGGAAGCCTGTGCTGGTGCAGTCTGTtcatgattaataattaatattattaattctcACTCTAACATaagagcaacaaaaaaaaagacagaaaagtcAAATCTTGTGTTTAACTGTGTGCTTAGTGTTGACAGTTCTCTGTGGCTCTAACtaactgtgtaataatgtgAGTTGTACATAAGCTTGTGAGGTGTTTGGATTTGACAAgcattttgtgtgtttgtgttggaattTTCTAAATCTTCTCTCTTCTTTGGTTGTGAGTGGAAATCAGCGAATGTTACCTTTTTAATATAAAGGGATTATCGTGTACATGAATACCTCCAACaccacaaacaacaaaacatcaGCAGCGTATCGCTAAAGACCGTATCGTCCTAAATCTAGGCTAAATGCTAACAGTAATTTAGTGTGACGTGATATAAGCCGTTTTGTGGTGTTTGTGTTCATTACGGAAGcactttatgtttttattttgacgCTCTACAAGCTCTTATTTGGTTGAACTTGATTGTGAATAGAAGATTATCAGACGTGTAATGTTAGCGAACAAAACGAGTGAATGGAAACAATGAGACTTTTTTGGTGTCGAATGGGAGAACCAGACAGATCAAACTGGTTTTGTATGTAGGATTCAAATGGTGGTGAACACCActtgtgtatatactgtaaattatttattgaagaaaaaaaataaaagtgtcttGTTGAATTCTTTGGAAA

Function

symbol description
rgma Predicted to enable coreceptor activity. Acts upstream of with a positive effect on membrane protein intracellular domain proteolysis. Acts upstream of or within cell morphogenesis. Predicted to be anchored component of plasma membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including brain; hindbrain neural plate; hindbrain neural rod; notochord; and tail bud. Human ortholog(s) of this gene implicated in multiple sclerosis. Orthologous to human RGMA (repulsive guidance molecule BMP co-receptor a).

NR:

description
repulsive guidance molecule A-like

GO:

id name namespace
GO:0046658 anchored component of plasma membrane cellular_component

KEGG:

id description
K23096 RGMA; repulsive guidance molecule A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254471.3 True 5472 mRNA 0.46 4 20986624 21007290

Neighbor

gene id symbol gene type direction distance location
lysmd4 NA coding upstream 234828 20745568 ~ 20751796 (+)
arrdc4 NA coding upstream 312397 20666244 ~ 20674227 (+)
LOC103025942 NA coding upstream 1139066 19775339 ~ 19847558 (+)
mef2a mef2a,LOC107715609,LOC107690382,LOC107715212 coding upstream 1214497 19666624 ~ 19772127 (+)
LOC111194775 NA coding upstream 1466071 19515607 ~ 19520553 (+)
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding downstream 244414 21251704 ~ 21255960 (+)
LOC103034933 LOC108431189,LOC101061116 coding downstream 347829 21355119 ~ 21371584 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding downstream 450066 21457356 ~ 21461379 (+)
LOC103031832 NA coding downstream 624470 21631760 ~ 21699721 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding downstream 993370 22000660 ~ 22061810 (+)
G159744 NA non-coding upstream 89086 20897151 ~ 20897538 (+)
G159739 NA non-coding upstream 135693 20850354 ~ 20850931 (+)
G159734 NA non-coding upstream 233370 20752800 ~ 20753254 (+)
G159731 NA non-coding upstream 233950 20752115 ~ 20752674 (+)
G159709 NA non-coding upstream 455899 20530473 ~ 20530725 (+)
G159777 NA non-coding downstream 69929 21077219 ~ 21077425 (+)
G159778 NA non-coding downstream 73426 21080716 ~ 21081329 (+)
G159781 slco3a1,LOC107690372,LOC107601651,LOC107715617,LOC107693030 non-coding downstream 82453 21089743 ~ 21126096 (+)
G159790 NA non-coding downstream 138983 21146273 ~ 21206671 (+)
G159836 NA non-coding downstream 428559 21435849 ~ 21443252 (+)
G159728 NA other upstream 249575 20736598 ~ 20737049 (+)
G159666 NA other upstream 799705 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 2410187 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 3000720 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 3614418 17327100 ~ 17372206 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 2012 21009302 ~ 21011794 (+)
fam174b NA other downstream 53366 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 1140554 22147844 ~ 22152785 (+)
G160134 NA other downstream 1846122 22853412 ~ 22854081 (+)
G160306 NA other downstream 3111839 24119129 ~ 24119825 (+)

Expression


Co-expression Network