LOC103034607 (si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203)


Basic Information

Item Value
gene id LOC103034607
gene name si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 21251704 ~ 21255960 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254474.3
CTTTCATGCTGCGTTGCCTGGTTACGGGCGGCGCGTGTAAGGGCGCGCGGGCGCTGCTCTCTCAGCTCGCGCGCTGTGAGTGAGAGTCTGGAGTCACTCAGAGCAGCATGACCGGACTGAACACAGCAAGGATGGAGGCGAATGTAGTGGTGCTAGGAACAGACAGCGTGGGGAAATCAGCTCTCACTGTCCGCTTCCTTACCCGGAGATTTATAGGGGAGTATGGGGATATTGAGTCCATCTTCAGTCACAGCATTACTGTGGACGGTCGAGAGCAAACTCTGAATATATGGGACTCCCCCTTTTCACAGCAGGATTTGTCTCCAGAGTCTACCACGTATGAAAAAAGGCTGCAGTGGGCCGATGGCTTCGTCCTGGTCTACAGCATCTGTGACCGAGCCAGTTTCAACACCATCGGCAAACTCCTCCAAAGCATAAAGGCTACTAAGGACTACGCAGGCTTACAGAATGTTCCTATAGTTATAGTGGGCAACAAGAGGGACCTGCACCACCGACGCACAGTGCTAAGTGAGGAGGGCCGGCTGCTGGCTCTGTCCGCAGACTGTCAGTTCTACGAAGTCTCGGCCGCAGAGAACTATCACAGCGTCCTCATGGTGTTCCACGGCCTGGTTAACCGCGTCAGGGAGTCCAGGTCGGCGGGCAAAAAGCCGGCAGGCATCAAGGGCATTGTCAAGAGCATGTCTGCCGTGTTTGCCCGGAGGCGTACCGACTCGTTGTGAGTCAGGAGGAATTACGGTGTCACTCCTGATTTTGGTCCGAGGTGACCTACTTTAGATGCCAGAACCGATGCCAGGGTGGGCTGATTCCTCTTTAGCCCCAGTGTTAGGGGTCTGGTGAGGATCTGGAAGCGATGCCCTGTGGATGTTCACTCAAAGCAGCACAACCACTACTTGAGGAAGAGGGCAGAGATGCGTGAGATGGTGGTAGCTGCTGTAAAAATCCATACAATGATGACTGTAACATCATTTTGAGGAATCCATTGAGGTATATGGGGGGCAGCATGAAGGTCTGAGAGAACTAGCATGTGTACAAGCTcatatatgtatttgtatttaaaaaatcatatgtCAGTGAACCTGCAAATATAAGATATGCCACAAAGAGGAAAGATAATTTGCTTATTAACAACAATTATTAAGATCTTGCAAGAAAGCAGGCTGCATTGTTCCATCTAAAATATGCTACTATATGTGGGCCAGAGCAGTGGGACATCCTGAGTGATTTAAACATTCAGAATTGTCTTTATTATCACATGGTCACAAGTACCAGCACAATAACATACAAGGGGGAAACAGGACAGGAAGTCAAGGTGAGCCGCAGCACGTGCAGGCACTGccatcatttattttccatCAGAAGGTATACAAGCTGaaagaaaaggggaaaaaacatACCCCCTGACTGTGTCCTGAAGAGCACAGTGTAGgaacatgcaaaaataaaaggacGGGATATTGGCTGATCACCAAcccaacttatccccaactctccaactcatgcCAAACCATTTTTCCCTGAGAGTTAAGGACACTTCTCGACAATTCAATGCTTAGGGCTATATACTCTTCTAGCCCATGCCTTGCATTGGCCTGCCCCAATAGGCTCAATTTTATCTGCTCCAAATAgtcatattctattggcaacATTTTTCTACAGGGACTGGAGAAGCTGCACATCAATGGGCACAGTTAAAGTAGTTGAATGCATGTATAAGGAGGAATTTCCACAATTATATGGACATAAAGTGTAGCCTATGTAAACCTGTGTTCTCTCTGCAACACAGGGCAGCAGCTTTTCCATTCACTTTACATAACTCTCTTGTGAATGTTAAAGTTGATTATGCAGAGGAAGCAACTGCATATTAGAGTTCTATAATGAAACCATAAAATCTATGAATGCAATTTAATAGACTGCATTGAGATGAATGGTGTGCAGTTTTAATCTGCTCATGTCCTAGAGTCCTAGAGCCTCATGTGTTCAGAAAAGACAAAGATCAGACAGATCACAAATTGTACACATGCAACGATTTTATTGAGAAAGTGTTTTGTTCAAACacagtatacaatataataagcATGCAGTAATATGAGAAAAGCATGTTGTAATATGTAACTCAGCATATGAGAGAGATATGAGAACATTTGTTGGATTTGTTGAACAACTGAGCTTGTTGTTGGTCGATGCCATGTATTGTTCTGTATATATCAAAGTACTGTTTTctacatctgttttttttcatt
>XM_015607163.2
CTTTCATGCTGCGTTGCCTGGTTACGGGCGGCGCGTGTAAGGGCGCGCGGGCGCTGCTCTCTCAGCTCGCGCGCTGTGAGTGAGAGTCTGGAGTCACTCAGAGCAGCATGACCGGACTGAACACAGCAAGGATGGAGGCGAATGTAGTGGTGCTAGGAACAGACAGCGTGGGGAAATCAGCTCTCACTGTCCGCTTCCTTACCCGGAGATTTATAGGGGAGTATGGGGATATTGAGTCCATCTTCAGTCACAGCATTACTGTGGACGGTCGAGAGCAAACTCTGAATATATGGGACTCCCCCTTTTCACAGgtCATCACTCATGAAACAGGTTGCTGGCATGTCTCTCAGCAGGATTTGTCTCCAGAGTCTACCACGTATGAAAAAAGGCTGCAGTGGGCCGATGGCTTCGTCCTGGTCTACAGCATCTGTGACCGAGCCAGTTTCAACACCATCGGCAAACTCCTCCAAAGCATAAAGGCTACTAAGGACTACGCAGGCTTACAGAATGTTCCTATAGTTATAGTGGGCAACAAGAGGGACCTGCACCACCGACGCACAGTGCTAAGTGAGGAGGGCCGGCTGCTGGCTCTGTCCGCAGACTGTCAGTTCTACGAAGTCTCGGCCGCAGAGAACTATCACAGCGTCCTCATGGTGTTCCACGGCCTGGTTAACCGCGTCAGGGAGTCCAGGTCGGCGGGCAAAAAGCCGGCAGGCATCAAGGGCATTGTCAAGAGCATGTCTGCCGTGTTTGCCCGGAGGCGTACCGACTCGTTGTGAGTCAGGAGGAATTACGGTGTCACTCCTGATTTTGGTCCGAGGTGACCTACTTTAGATGCCAGAACCGATGCCAGGGTGGGCTGATTCCTCTTTAGCCCCAGTGTTAGGGGTCTGGTGAGGATCTGGAAGCGATGCCCTGTGGATGTTCACTCAAAGCAGCACAACCACTACTTGAGGAAGAGGGCAGAGATGCGTGAGATGGTGGTAGCTGCTGTAAAAATCCATACAATGATGACTGTAACATCATTTTGAGGAATCCATTGAGGTATATGGGGGGCAGCATGAAGGTCTGAGAGAACTAGCATGTGTACAAGCTcatatatgtatttgtatttaaaaaatcatatgtCAGTGAACCTGCAAATATAAGATATGCCACAAAGAGGAAAGATAATTTGCTTATTAACAACAATTATTAAGATCTTGCAAGAAAGCAGGCTGCATTGTTCCATCTAAAATATGCTACTATATGTGGGCCAGAGCAGTGGGACATCCTGAGTGATTTAAACATTCAGAATTGTCTTTATTATCACATGGTCACAAGTACCAGCACAATAACATACAAGGGGGAAACAGGACAGGAAGTCAAGGTGAGCCGCAGCACGTGCAGGCACTGccatcatttattttccatCAGAAGGTATACAAGCTGaaagaaaaggggaaaaaacatACCCCCTGACTGTGTCCTGAAGAGCACAGTGTAGgaacatgcaaaaataaaaggacGGGATATTGGCTGATCACCAAcccaacttatccccaactctccaactcatgcCAAACCATTTTTCCCTGAGAGTTAAGGACACTTCTCGACAATTCAATGCTTAGGGCTATATACTCTTCTAGCCCATGCCTTGCATTGGCCTGCCCCAATAGGCTCAATTTTATCTGCTCCAAATAgtcatattctattggcaacATTTTTCTACAGGGACTGGAGAAGCTGCACATCAATGGGCACAGTTAAAGTAGTTGAATGCATGTATAAGGAGGAATTTCCACAATTATATGGACATAAAGTGTAGCCTATGTAAACCTGTGTTCTCTCTGCAACACAGGGCAGCAGCTTTTCCATTCACTTTACATAACTCTCTTGTGAATGTTAAAGTTGATTATGCAGAGGAAGCAACTGCATATTAGAGTTCTATAATGAAACCATAAAATCTATGAATGCAATTTAATAGACTGCATTGAGATGAATGGTGTGCAGTTTTAATCTGCTCATGTCCTAGAGTCCTAGAGCCTCATGTGTTCAGAAAAGACAAAGATCAGACAGATCACAAATTGTACACATGCAACGATTTTATTGAGAAAGTGTTTTGTTCAAACacagtatacaatataataagcATGCAGTAATATGAGAAAAGCATGTTGTAATATGTAACTCAGCATATGAGAGAGATATGAGAACATTTGTTGGATTTGTTGAACAACTGAGCTTGTTGTTGGTCGATGCCATGTATTGTTCTGTATATATCAAAGTACTGTTTTctacatctgttttttttcatt
>XM_015607165.2
CTTTCATGCTGCGTTGCCTGGTTACGGGCGGCGCGTGTAAGGGCGCGCGGGCGCTGCTCTCTCAGCTCGCGCGCTGTGAGTGAGAGTCTGGAGTCACTCAGAGCAGCATGACCGGACTGAACACAGCAAGGATGGAGGCGAATGTAGTGGTGCTAGGAACAGACAGCGTGGGGAAATCAGCTCTCACTGTCCGCTTCCTTACCCGGAGATTTATAGGGGAGTATGGGGATATTGAGTCCATCTTCAGTCACAGCATTACTGTGGACGGTCGAGAGCAAACTCTGAATATATGGGACTCCCCCTTTTCACAGGATTTGTCTCCAGAGTCTACCACGTATGAAAAAAGGCTGCAGTGGGCCGATGGCTTCGTCCTGGTCTACAGCATCTGTGACCGAGCCAGTTTCAACACCATCGGCAAACTCCTCCAAAGCATAAAGGCTACTAAGGACTACGCAGGCTTACAGAATGTTCCTATAGTTATAGTGGGCAACAAGAGGGACCTGCACCACCGACGCACAGTGCTAAGTGAGGAGGGCCGGCTGCTGGCTCTGTCCGCAGACTGTCAGTTCTACGAAGTCTCGGCCGCAGAGAACTATCACAGCGTCCTCATGGTGTTCCACGGCCTGGTTAACCGCGTCAGGGAGTCCAGGTCGGCGGGCAAAAAGCCGGCAGGCATCAAGGGCATTGTCAAGAGCATGTCTGCCGTGTTTGCCCGGAGGCGTACCGACTCGTTGTGAGTCAGGAGGAATTACGGTGTCACTCCTGATTTTGGTCCGAGGTGACCTACTTTAGATGCCAGAACCGATGCCAGGGTGGGCTGATTCCTCTTTAGCCCCAGTGTTAGGGGTCTGGTGAGGATCTGGAAGCGATGCCCTGTGGATGTTCACTCAAAGCAGCACAACCACTACTTGAGGAAGAGGGCAGAGATGCGTGAGATGGTGGTAGCTGCTGTAAAAATCCATACAATGATGACTGTAACATCATTTTGAGGAATCCATTGAGGTATATGGGGGGCAGCATGAAGGTCTGAGAGAACTAGCATGTGTACAAGCTcatatatgtatttgtatttaaaaaatcatatgtCAGTGAACCTGCAAATATAAGATATGCCACAAAGAGGAAAGATAATTTGCTTATTAACAACAATTATTAAGATCTTGCAAGAAAGCAGGCTGCATTGTTCCATCTAAAATATGCTACTATATGTGGGCCAGAGCAGTGGGACATCCTGAGTGATTTAAACATTCAGAATTGTCTTTATTATCACATGGTCACAAGTACCAGCACAATAACATACAAGGGGGAAACAGGACAGGAAGTCAAGGTGAGCCGCAGCACGTGCAGGCACTGccatcatttattttccatCAGAAGGTATACAAGCTGaaagaaaaggggaaaaaacatACCCCCTGACTGTGTCCTGAAGAGCACAGTGTAGgaacatgcaaaaataaaaggacGGGATATTGGCTGATCACCAAcccaacttatccccaactctccaactcatgcCAAACCATTTTTCCCTGAGAGTTAAGGACACTTCTCGACAATTCAATGCTTAGGGCTATATACTCTTCTAGCCCATGCCTTGCATTGGCCTGCCCCAATAGGCTCAATTTTATCTGCTCCAAATAgtcatattctattggcaacATTTTTCTACAGGGACTGGAGAAGCTGCACATCAATGGGCACAGTTAAAGTAGTTGAATGCATGTATAAGGAGGAATTTCCACAATTATATGGACATAAAGTGTAGCCTATGTAAACCTGTGTTCTCTCTGCAACACAGGGCAGCAGCTTTTCCATTCACTTTACATAACTCTCTTGTGAATGTTAAAGTTGATTATGCAGAGGAAGCAACTGCATATTAGAGTTCTATAATGAAACCATAAAATCTATGAATGCAATTTAATAGACTGCATTGAGATGAATGGTGTGCAGTTTTAATCTGCTCATGTCCTAGAGTCCTAGAGCCTCATGTGTTCAGAAAAGACAAAGATCAGACAGATCACAAATTGTACACATGCAACGATTTTATTGAGAAAGTGTTTTGTTCAAACacagtatacaatataataagcATGCAGTAATATGAGAAAAGCATGTTGTAATATGTAACTCAGCATATGAGAGAGATATGAGAACATTTGTTGGATTTGTTGAACAACTGAGCTTGTTGTTGGTCGATGCCATGTATTGTTCTGTATATATCAAAGTACTGTTTTctacatctgttttttttcatt

Function

symbol description
si:dkeyp-59c12.1 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Orthologous to human RERGL (RERG like).

NR:

description
PREDICTED: ras-related and estrogen-regulated growth inhibitor-like protein isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254474.3 False 2261 mRNA 0.45 4 21251704 21255960
XM_015607163.2 True 2300 mRNA 0.45 4 21251704 21255960
XM_015607165.2 False 2258 mRNA 0.45 4 21251704 21255960

Neighbor

gene id symbol gene type direction distance location
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding upstream 244414 20986624 ~ 21007290 (+)
lysmd4 NA coding upstream 499908 20745568 ~ 20751796 (+)
arrdc4 NA coding upstream 577477 20666244 ~ 20674227 (+)
LOC103025942 NA coding upstream 1404146 19775339 ~ 19847558 (+)
mef2a mef2a,LOC107715609,LOC107690382,LOC107715212 coding upstream 1479577 19666624 ~ 19772127 (+)
LOC103034933 LOC108431189,LOC101061116 coding downstream 99159 21355119 ~ 21371584 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding downstream 201396 21457356 ~ 21461379 (+)
LOC103031832 NA coding downstream 375800 21631760 ~ 21699721 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding downstream 744700 22000660 ~ 22061810 (+)
LOC103026111 LOC108434138 coding downstream 821518 22077478 ~ 22079758 (+)
G159790 NA non-coding upstream 45033 21146273 ~ 21206671 (+)
G159781 slco3a1,LOC107690372,LOC107601651,LOC107715617,LOC107693030 non-coding upstream 125608 21089743 ~ 21126096 (+)
G159778 NA non-coding upstream 170375 21080716 ~ 21081329 (+)
G159777 NA non-coding upstream 174279 21077219 ~ 21077425 (+)
G159744 NA non-coding upstream 354166 20897151 ~ 20897538 (+)
G159836 NA non-coding downstream 179889 21435849 ~ 21443252 (+)
G159864 NA non-coding downstream 235429 21491389 ~ 21491751 (+)
G159868 NA non-coding downstream 252635 21508595 ~ 21508833 (+)
G159891 NA non-coding downstream 496545 21752505 ~ 21752999 (+)
G159896 NA non-coding downstream 591657 21847617 ~ 21850541 (+)
fam174b NA other upstream 177131 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 239910 21009302 ~ 21011794 (+)
G159728 NA other upstream 514655 20736598 ~ 20737049 (+)
G159666 NA other upstream 1064785 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 2675267 18525528 ~ 18576437 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 891884 22147844 ~ 22152785 (+)
G160134 NA other downstream 1597452 22853412 ~ 22854081 (+)
G160306 NA other downstream 2863169 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 5067860 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 5361302 26617262 ~ 26755313 (+)

Expression


Co-expression Network